RchiOBHm_Chr2g0143931

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000736
Physical Location & Seq
Reverse (-)
61521929 .. 61523032
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51397

Sequence Viewer

Length: 639 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTTATGGTATTACTCTCTTGGAGAAAAACAGCATGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTGCTACTTTGGATAGGTCTGTGTCTCTTATTAGTCCATTAAGTCTTCAACAACTCAACAACAACAAAAGAGGAGGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAACAGAAGGGTTCTGCTTCTGCTATCACTTGTGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

212

Amino Acids

23.95

Weight (kDa)

9.35

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 115 8.8e-12 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 585
AciI CCGC 2 cut(s) 123, 585
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 405, 412, 470
AluBI AGCT 5 cut(s) 76, 112, 139, 283, 416
AluI AGCT 5 cut(s) 76, 112, 139, 283, 416
Alw26I GTCTC 2 cut(s) 234, 450
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 5 cut(s) 200, 270, 339, 501, 586
Asp700I GAANNNNTTC 1 cut(s) 605
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 53, 140
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 393, 458
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 450
BfaI CTAG 1 cut(s) 396
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 1 cut(s) 586
BlsI GCNGC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 502
BmsI GCATC 2 cut(s) 69, 250
BpiI GAAGAC 2 cut(s) 393, 458
BpmI CTGGAG 1 cut(s) 235
Bpu14I TTCGAA 2 cut(s) 172, 196
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 3 cut(s) 40, 59, 512
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 2 cut(s) 507, 510
Bsh1236I CGCG 2 cut(s) 299, 585
BshFI GGCC 5 cut(s) 202, 272, 341, 503, 588
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 234, 450
BsnI GGCC 5 cut(s) 202, 272, 341, 503, 588
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp143I GATC 3 cut(s) 126, 145, 208
BspACI CCGC 2 cut(s) 123, 585
BspANI GGCC 5 cut(s) 202, 272, 341, 503, 588
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 585
BspLI GGNNCC 1 cut(s) 502
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 1 cut(s) 252
BssMI GATC 3 cut(s) 126, 145, 208
Bst4CI ACNGT 3 cut(s) 152, 220, 384
Bst6I CTCTTC 1 cut(s) 591
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 186, 369
BstF5I GGATG 3 cut(s) 40, 59, 512
BstFNI CGCG 2 cut(s) 299, 585
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 3 cut(s) 129, 148, 211
BstMAI GTCTC 2 cut(s) 234, 450
BstMBI GATC 3 cut(s) 126, 145, 208
BstMWI GCNNNNNNNGC 2 cut(s) 269, 422
BstNSI RCATGY 1 cut(s) 335
BstUI CGCG 2 cut(s) 299, 585
BstV2I GAAGAC 2 cut(s) 393, 458
BstX2I RGATCY 2 cut(s) 126, 208
BstYI RGATCY 2 cut(s) 126, 208
BsuRI GGCC 5 cut(s) 202, 272, 341, 503, 588
BtsCI GGATG 3 cut(s) 40, 59, 512
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 585
Cfr13I GGNCC 1 cut(s) 501
CviAII CATG 2 cut(s) 155, 332
DdeI CTNAG 2 cut(s) 186, 369
DpnI GATC 3 cut(s) 128, 147, 210
DpnII GATC 3 cut(s) 126, 145, 208
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco147I AGGCCT 1 cut(s) 202
FaeI CATG 2 cut(s) 158, 335
FaiI YATR 4 cut(s) 156, 206, 304, 333
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 2 cut(s) 154, 331
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 586
FokI GGATG 3 cut(s) 46, 47, 499
Fsp4HI GCNGC 1 cut(s) 586
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 584
GluI GCNGC 1 cut(s) 586
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 503, 588
HhaI GCGC 1 cut(s) 585
Hin1II CATG 2 cut(s) 158, 335
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HindIII AAGCTT 3 cut(s) 110, 281, 414
HinfI GANTC 5 cut(s) 11, 174, 182, 346, 576
HphI GGTGA 2 cut(s) 53, 140
Hpy166II GTNNAC 1 cut(s) 216
Hpy188III TCNNGA 3 cut(s) 188, 389, 516
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 5 cut(s) 15, 192, 298, 529, 595
HpyCH4III ACNGT 3 cut(s) 152, 220, 384
HpyCH4V TGCA 3 cut(s) 133, 335, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 422
HpyF3I CTNAG 2 cut(s) 186, 369
Hsp92II CATG 2 cut(s) 158, 335
HspAI GCGC 1 cut(s) 583
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 126, 145, 208
LmnI GCTCC 2 cut(s) 97, 136
LpnPI CCDG 7 cut(s) 75, 119, 173, 192, 265, 402, 529
LweI GCATC 2 cut(s) 69, 250
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 41
MalI GATC 3 cut(s) 128, 147, 210
MboI GATC 3 cut(s) 126, 145, 208
MboII GAAGA 3 cut(s) 393, 458, 608
MflI RGATCY 2 cut(s) 126, 208
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 2 cut(s) 141, 377
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 25, 184, 358, 485, 488, 491, 501
Mox20I TGGCCA 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 605
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 2 cut(s) 299, 585
MwoI GCNNNNNNNGC 2 cut(s) 269, 422
NdeII GATC 3 cut(s) 126, 145, 208
NlaIII CATG 2 cut(s) 158, 335
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 335
NspV TTCGAA 2 cut(s) 172, 196
PaeI GCATGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 5 cut(s) 11, 174, 182, 346, 576
PkrI GCNGC 1 cut(s) 587
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 501
PsuI RGATCY 2 cut(s) 126, 208
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 1 cut(s) 586
Sau3AI GATC 3 cut(s) 126, 145, 208
Sau96I GGNCC 1 cut(s) 501
SfaNI GCATC 2 cut(s) 69, 250
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 1 cut(s) 153
SphI GCATGC 1 cut(s) 335
Sse9I AATT 2 cut(s) 141, 377
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 123, 585
SspMI CTAG 1 cut(s) 396
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 3 cut(s) 152, 220, 384
TaqI TCGA 2 cut(s) 172, 196
TasI AATT 2 cut(s) 141, 377
TauI GCSGC 1 cut(s) 588
TfiI GAWTC 5 cut(s) 11, 174, 182, 346, 576
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 637
XceI RCATGY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.