Rorug02G0253900

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000736
Physical Location & Seq
Forward (+)
26636190 .. 26637299
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0253900.1

Sequence Viewer

Length: 651 bp
ATGAGTGGAAAAAGAAAACAAACCAGCCCAGTCGGAAGCCCTTTGTCCGGTGGGAATGTATCCGATGGTGGTTCCAAAGAGCAAGACAGGTTCCTTCCCATTGCTAATGTGAGCCGGATCATGAAGAAGTCCCTCCCTGCAAATGCCAAGATTTCAAAGGAAGCCAAGGAAACCGTCCAAGAATGCGTCTCTGAGTTCATAAGCTTCATCACCGGGGAAGCTTCGGACAAGTGCCAGCGAGAGAAGAGGAAGACTATCAATGGCGATGATCTTCTTTGGGCCATGACAACCCTTGGTTTTGAGAATTATGTTGGACCCTTGAAGGGCTATCTCAACAAGTATAGGGAGACCGAGGGAGAGAAGAACTCCATGACTAGAGGACAAGAAGATCACAACCACTCATCTAATGATGGTCATCACATCAACAACAACAACCAAGTCCATAATGGTACTAATGGGATCAACACAGTAGGAATGAATAAGGTGGATTTTTTCAATATTAATGGTGGGTTTTATTCACTTGGGGGGCAACAGATGAGTGCTCCAAAAGGGTTTGGAGAGAGTGGAAGGGTTATTGGTTATGGAGATCAGAATCTGGTGGCTTATGGGGATGGAAATGCAAATCATCTTCACAATGGGATAGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

216

Amino Acids

23.5

Weight (kDa)

7.79

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 31 - 95 4.7e-27 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 125, 467
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 47, 323
AgsI TTSAA 3 cut(s) 156, 322, 496
AluBI AGCT 2 cut(s) 204, 221
AluI AGCT 2 cut(s) 204, 221
Alw21I GWGCWC 1 cut(s) 544
Alw26I GTCTC 2 cut(s) 193, 341
AlwI GGATC 2 cut(s) 125, 467
AlwNI CAGNNNCTG 1 cut(s) 595
AoxI GGCC 1 cut(s) 279
AseI ATTAAT 1 cut(s) 501
AspS9I GGNCC 2 cut(s) 279, 314
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 544
BccI CCATC 4 cut(s) 59, 404, 605, 639
BciVI GTATCC 1 cut(s) 70
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 193, 341
BfaI CTAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 279, 314
BmiI GGNNCC 3 cut(s) 73, 92, 316
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpuMI CCSGG 1 cut(s) 214
BsaBI GATNNNNATC 2 cut(s) 414, 591
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 4 cut(s) 165, 213, 292, 351
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 323
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 2 cut(s) 414, 591
BseDI CCNNGG 4 cut(s) 165, 213, 292, 351
BseGI GGATG 2 cut(s) 616, 650
BseJI GATNNNNATC 2 cut(s) 414, 591
BseLI CCNNNNNNNGG 2 cut(s) 47, 323
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 29
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 544
BsiSI CCGG 3 cut(s) 48, 115, 213
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 47, 323
BsmAI GTCTC 2 cut(s) 193, 341
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 5 cut(s) 117, 268, 388, 459, 586
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 184
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 73, 92, 316
BspPI GGATC 2 cut(s) 125, 467
BspTNI GGTCTC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 165, 213, 292, 351
BssMI GATC 5 cut(s) 117, 268, 388, 459, 586
BssT1I CCWWGG 2 cut(s) 165, 292
Bst4CI ACNGT 2 cut(s) 175, 469
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 616, 650
BstKTI GATC 5 cut(s) 120, 271, 391, 462, 589
BstMAI GTCTC 2 cut(s) 193, 341
BstMBI GATC 5 cut(s) 117, 268, 388, 459, 586
BstSCI CCNGG 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 257
BsuI GTATCC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 616, 650
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 595
CciI TCATGA 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 279, 314
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 450
CviAII CATG 3 cut(s) 121, 283, 370
CviJI RGCY 9 cut(s) 27, 39, 114, 164, 204, 221, 281, 327, 602
CviKI_1 RGCY 9 cut(s) 27, 39, 114, 164, 204, 221, 281, 327, 602
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 1 cut(s) 192
DpnI GATC 5 cut(s) 119, 270, 390, 461, 588
DpnII GATC 5 cut(s) 117, 268, 388, 459, 586
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 165, 292
Eco31I GGTCTC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 314
EcoT14I CCWWGG 2 cut(s) 165, 292
ErhI CCWWGG 2 cut(s) 165, 292
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 3 cut(s) 124, 286, 373
FaiI YATR 9 cut(s) 122, 200, 284, 309, 342, 371, 444, 582, 606
FaqI GGGAC 1 cut(s) 115
FatI CATG 3 cut(s) 120, 282, 369
FokI GGATG 1 cut(s) 623
FspBI CTAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 281
HapII CCGG 3 cut(s) 48, 115, 213
HgaI GACGC 1 cut(s) 175
Hin1II CATG 3 cut(s) 124, 286, 373
HindIII AAGCTT 2 cut(s) 202, 219
HinfI GANTC 1 cut(s) 592
HpaII CCGG 3 cut(s) 48, 115, 213
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 5 cut(s) 35, 64, 193, 226, 591
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 3 cut(s) 104, 316, 561
HpyCH4III ACNGT 2 cut(s) 175, 469
HpyCH4V TGCA 2 cut(s) 140, 620
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 3 cut(s) 124, 286, 373
Kzo9I GATC 5 cut(s) 117, 268, 388, 459, 586
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 9 cut(s) 37, 42, 61, 73, 128, 150, 226, 248, 581
MaeI CTAG 1 cut(s) 375
MalI GATC 5 cut(s) 119, 270, 390, 461, 588
MboI GATC 5 cut(s) 117, 268, 388, 459, 586
MboII GAAGA 7 cut(s) 136, 256, 262, 263, 373, 398, 620
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 1 cut(s) 304
MmeI TCCRAC 2 cut(s) 13, 292
MnlI CCTC 4 cut(s) 143, 240, 346, 371
MseI TTAA 1 cut(s) 501
MspI CCGG 3 cut(s) 48, 115, 213
MspR9I CCNGG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 188
NciI CCSGG 1 cut(s) 214
NdeII GATC 5 cut(s) 117, 268, 388, 459, 586
NlaIII CATG 3 cut(s) 124, 286, 373
NlaIV GGNNCC 3 cut(s) 73, 92, 316
PagI TCATGA 1 cut(s) 120
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 592
PshBI ATTAAT 1 cut(s) 501
PspN4I GGNNCC 3 cut(s) 73, 92, 316
PspPI GGNCC 2 cut(s) 279, 314
PstNI CAGNNNCTG 1 cut(s) 595
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
SaqAI TTAA 1 cut(s) 501
Sau3AI GATC 5 cut(s) 117, 268, 388, 459, 586
Sau96I GGNCC 2 cut(s) 279, 314
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 1 cut(s) 544
SetI ASST 4 cut(s) 92, 206, 223, 486
SinI GGWCC 1 cut(s) 314
Sse9I AATT 1 cut(s) 304
SspI AATATT 1 cut(s) 499
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 2 cut(s) 165, 292
TaaI ACNGT 2 cut(s) 175, 469
TaqII GACCGA 1 cut(s) 365
TasI AATT 1 cut(s) 304
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TspDTI ATGAA 4 cut(s) 137, 187, 196, 491
VpaK11BI GGWCC 1 cut(s) 314
VspI ATTAAT 1 cut(s) 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.