Rmu_sc0006379.1_g000002

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006379.1
OG0000736
Physical Location & Seq
Forward (+)
15349 .. 16611
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006379.1_g000002.1.cds

Sequence Viewer

Length: 1263 bp
atgggttgcgattctaaaagaaggcgtagagaggatgtgggtgacacaacgatttcatcatccaagaagcaaaagctgatgcagatgacaggtttggagcagacccaaaagcttctttgttgcgggatcttgcaggagctaattgatcaccgtcatggctcggtggctgttcgaatccctgattctcaggaggttcgaaggcctatggatctgtccaccgtcaaatccaagttggagagagacaactactccagtattgatgcctttgtggccgatgtcaagcttaccttccaaaacgcgtcatggtattactctcttggagaaaaacagcgtgcaatggccaagaatcttggtaaggtttttgaggctaagtggaaattacggtttcctgaaactaggtcttcaaccttgaaagcttcttgttctagtttggataggtctgtgtctcctattagtccggtgagtccattaagtcttcaacaactcaacaacaacaaaagagaggccaagaggtcatccagaaaccttgacgaagagaagggttctgcttctgctaccacttgtgcagtggataaagataaggaacaccgaatcaagcgcggccttgacgaagagaagggttctgcttctgctatcacttgtgataaggaacaccgaatcaagcgcggccttgaccaagagaagggttctgcttctgctatcacttgtgataaggaacaccgaatcaagcgcggccttgaccaagagaagggttctgcttctgctatcacttgtgataaggaacaccgaatcaagcgcggccttgaccaagagaagggttctgcttctgctatcacttgtgataaggaacaccgaatcaagcgcggccttgaccaagagaagggttctgcttctgctatcacttgtgataaggaacaccgaatcaagcgcggccttgaccaagagaagggttctgcttctgctatcacttgtgcagtgaataaatataaggagcaccgaatcaaacagctaagggaacaggctcgtaaggaaattttgagggttgaagaggctgctcgattgaaagtcgagaatcctttacaagatcttcaacaactcaacttgttgtgcagtggtggcatcaaacaggattcttgttacagggtgtatcgttgtttgacacttgagaagttgggcatctatttgaagagggatgaacttgaagatgttgatgaagaggatgaatttcgcattggagattgggaagaaggtgaaatccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

420

Amino Acids

47.59

Weight (kDa)

8.96

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 7 cut(s) 299, 600, 666, 732, 798, 864, 930
AciI CCGC 7 cut(s) 123, 600, 666, 732, 798, 864, 930
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 2 cut(s) 1032, 1223
AfiI CCNNNNNNNGG 5 cut(s) 682, 748, 814, 880, 946
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 8 cut(s) 405, 412, 479, 1046, 1063, 1091, 1186, 1202
AjuI GAANNNNNNNTTGG 2 cut(s) 1215, 1247
AluBI AGCT 6 cut(s) 76, 112, 139, 283, 416, 1009
AluI AGCT 6 cut(s) 76, 112, 139, 283, 416, 1009
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 2 cut(s) 234, 450
AlwI GGATC 2 cut(s) 134, 216
ApeKI GCWGC 1 cut(s) 1052
ApoI RAATTY 2 cut(s) 1032, 1223
AspLEI GCGC 6 cut(s) 600, 666, 732, 798, 864, 930
AsuHPI GGTGA 4 cut(s) 53, 140, 472, 1262
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 393, 467
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 1 cut(s) 1039
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 450
BfaI CTAG 2 cut(s) 396, 426
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 1084
BisI GCNGC 7 cut(s) 601, 667, 733, 799, 865, 931, 1053
BlsI GCNGC 7 cut(s) 602, 668, 734, 800, 866, 932, 1054
BmsI GCATC 4 cut(s) 69, 250, 1128, 1185
BpiI GAAGAC 2 cut(s) 393, 467
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 1010
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 1 cut(s) 1184
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 5 cut(s) 682, 748, 814, 880, 946
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 5 cut(s) 40, 59, 515, 1198, 1225
BseLI CCNNNNNNNGG 5 cut(s) 682, 748, 814, 880, 946
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 1039
BsgI GTGCAG 3 cut(s) 585, 993, 1129
Bsh1236I CGCG 7 cut(s) 299, 600, 666, 732, 798, 864, 930
BsiHKAI GWGCWC 1 cut(s) 996
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 5 cut(s) 682, 748, 814, 880, 946
BsmAI GTCTC 2 cut(s) 234, 450
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 996
Bsp143I GATC 4 cut(s) 126, 145, 208, 1084
BspACI CCGC 7 cut(s) 123, 600, 666, 732, 798, 864, 930
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 7 cut(s) 299, 600, 666, 732, 798, 864, 930
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 1 cut(s) 252
BssMI GATC 4 cut(s) 126, 145, 208, 1084
Bst4CI ACNGT 3 cut(s) 152, 220, 384
Bst6I CTCTTC 5 cut(s) 528, 606, 1041, 1181, 1209
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 1010
BstF5I GGATG 5 cut(s) 40, 59, 515, 1198, 1225
BstFNI CGCG 7 cut(s) 299, 600, 666, 732, 798, 864, 930
BstHHI GCGC 6 cut(s) 600, 666, 732, 798, 864, 930
BstKTI GATC 4 cut(s) 129, 148, 211, 1087
BstMAI GTCTC 2 cut(s) 234, 450
BstMBI GATC 4 cut(s) 126, 145, 208, 1084
BstMWI GCNNNNNNNGC 2 cut(s) 269, 1116
BstUI CGCG 7 cut(s) 299, 600, 666, 732, 798, 864, 930
BstV1I GCAGC 1 cut(s) 1039
BstV2I GAAGAC 2 cut(s) 393, 467
BstX2I RGATCY 3 cut(s) 126, 208, 1084
BstYI RGATCY 3 cut(s) 126, 208, 1084
BtsCI GGATG 5 cut(s) 40, 59, 515, 1198, 1225
BtsI GCAGTG 3 cut(s) 573, 981, 1117
BtsIMutI CAGTG 3 cut(s) 573, 981, 1117
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 6 cut(s) 600, 666, 732, 798, 864, 930
CseI GACGC 1 cut(s) 288
CviAII CATG 2 cut(s) 155, 303
DdeI CTNAG 3 cut(s) 186, 369, 1010
DpnI GATC 4 cut(s) 128, 147, 210, 1086
DpnII GATC 4 cut(s) 126, 145, 208, 1084
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 5 cut(s) 528, 606, 1041, 1181, 1209
EarI CTCTTC 5 cut(s) 528, 606, 1041, 1181, 1209
Eco147I AGGCCT 1 cut(s) 202
FaeI CATG 2 cut(s) 158, 306
FaiI YATR 4 cut(s) 156, 206, 304, 987
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 2 cut(s) 154, 302
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 7 cut(s) 601, 667, 733, 799, 865, 931, 1053
FokI GGATG 5 cut(s) 46, 47, 502, 1205, 1232
Fsp4HI GCNGC 7 cut(s) 601, 667, 733, 799, 865, 931, 1053
FspBI CTAG 2 cut(s) 396, 426
GlaI GCGC 6 cut(s) 599, 665, 731, 797, 863, 929
GluI GCNGC 7 cut(s) 601, 667, 733, 799, 865, 931, 1053
GsuI CTGGAG 1 cut(s) 235
HapII CCGG 1 cut(s) 458
HgaI GACGC 1 cut(s) 288
HhaI GCGC 6 cut(s) 600, 666, 732, 798, 864, 930
Hin1II CATG 2 cut(s) 158, 306
Hin6I GCGC 6 cut(s) 598, 664, 730, 796, 862, 928
HinP1I GCGC 6 cut(s) 598, 664, 730, 796, 862, 928
HindIII AAGCTT 3 cut(s) 110, 281, 414
HpaII CCGG 1 cut(s) 458
HphI GGTGA 4 cut(s) 53, 140, 472, 1262
Hpy166II GTNNAC 1 cut(s) 216
Hpy188III TCNNGA 4 cut(s) 188, 389, 519, 1069
Hpy8I GTNNAC 1 cut(s) 216
HpyCH4III ACNGT 3 cut(s) 152, 220, 384
HpyCH4V TGCA 6 cut(s) 82, 133, 335, 566, 974, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 1116
HpyF3I CTNAG 3 cut(s) 186, 369, 1010
Hsp92II CATG 2 cut(s) 158, 306
HspAI GCGC 6 cut(s) 598, 664, 730, 796, 862, 928
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 1084
LmnI GCTCC 3 cut(s) 97, 136, 991
Lsp1109I GCAGC 1 cut(s) 1039
LweI GCATC 4 cut(s) 69, 250, 1128, 1185
MaeI CTAG 2 cut(s) 396, 426
MaeIII GTNAC 2 cut(s) 41, 1136
MalI GATC 4 cut(s) 128, 147, 210, 1086
MboI GATC 4 cut(s) 126, 145, 208, 1084
MflI RGATCY 3 cut(s) 126, 208, 1084
MhlI GDGCHC 1 cut(s) 996
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 4 cut(s) 141, 377, 1032, 1223
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 358, 496, 504, 1032, 1042, 1182, 1210
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 1 cut(s) 458
MvnI CGCG 7 cut(s) 299, 600, 666, 732, 798, 864, 930
MwoI GCNNNNNNNGC 2 cut(s) 269, 1116
NdeII GATC 4 cut(s) 126, 145, 208, 1084
NlaIII CATG 2 cut(s) 158, 306
NmuCI GTSAC 1 cut(s) 41
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PkrI GCNGC 7 cut(s) 602, 668, 734, 800, 866, 932, 1054
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
PsuI RGATCY 3 cut(s) 126, 208, 1084
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 7 cut(s) 601, 667, 733, 799, 865, 931, 1053
Sau3AI GATC 4 cut(s) 126, 145, 208, 1084
SchI GAGTC 1 cut(s) 472
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 4 cut(s) 69, 250, 1128, 1185
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 1163
SmoI CTYRAG 1 cut(s) 1163
Sse9I AATT 4 cut(s) 141, 377, 1032, 1223
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 7 cut(s) 123, 600, 666, 732, 798, 864, 930
SspMI CTAG 2 cut(s) 396, 426
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 3 cut(s) 152, 220, 384
TaqI TCGA 4 cut(s) 172, 196, 1057, 1068
TasI AATT 4 cut(s) 141, 377, 1032, 1223
TauI GCSGC 6 cut(s) 603, 669, 735, 801, 867, 933
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 3 cut(s) 573, 981, 1117
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 1052
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 45, 1209, 1227, 1236
TspGWI ACGGA 1 cut(s) 1247
TspRI CASTG 3 cut(s) 573, 981, 1117
XapI RAATTY 2 cut(s) 1032, 1223
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XspI CTAG 2 cut(s) 396, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.