Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Reverse (-)

58749199 .. 58750575

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTCATGGTATTACTCTCTTGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTGTGCTAGTTTGGATAGGTCTGTGTCTGCTATTAGTCCTGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGATAAGGAACACCGAATCAAGCGCGGCCTTGACCAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAACTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGACAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAACATGTTTATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGATGGAGAACAGAGTCCACAAACAACTAAATATTACATCCACATATGGTGGCATATCATCATCATCAAGTACATACTGCTACGTAGCAAAATTTATTCTATGTACAAAAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

343

Amino Acids

39.65

Weight (kDa)

9.32

Isoelectric Point (pI)

65.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	63 - 114	1e-10	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	299, 597
AciI	CCGC	2 cut(s)	123, 597
AclWI	GGATC	2 cut(s)	134, 216
AcoI	YGGCCR	2 cut(s)	270, 339
AcsI	RAATTY	4 cut(s)	699, 890, 1005, 1024
AfaI	GTAC	2 cut(s)	986, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	89, 613
AflIII	ACRYGT	2 cut(s)	297, 871
AgsI	TTSAA	8 cut(s)	405, 412, 482, 713, 730, 758, 853, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	882, 914
AluBI	AGCT	6 cut(s)	76, 112, 139, 283, 416, 661
AluI	AGCT	6 cut(s)	76, 112, 139, 283, 416, 661
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	134, 216
AoxI	GGCC	5 cut(s)	200, 270, 339, 513, 598
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	4 cut(s)	699, 890, 1005, 1024
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	53, 140
AsuII	TTCGAA	2 cut(s)	172, 196
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	663
BbsI	GAAGAC	2 cut(s)	393, 470
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	1 cut(s)	911
BceAI	ACGGC	1 cut(s)	689
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	2 cut(s)	396, 429
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	2 cut(s)	598, 720
BlsI	GCNGC	2 cut(s)	599, 721
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	514
BmsI	GCATC	4 cut(s)	69, 250, 795, 852
BpiI	GAAGAC	2 cut(s)	393, 470
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	677
Bpu14I	TTCGAA	2 cut(s)	172, 196
BsaAI	YACGTR	1 cut(s)	998
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 613
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	342
BseGI	GGATG	6 cut(s)	40, 59, 524, 865, 892, 951
BseLI	CCNNNNNNNGG	2 cut(s)	89, 613
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	706
BsgI	GTGCAG	2 cut(s)	660, 796
Bsh1236I	CGCG	2 cut(s)	299, 597
BshFI	GGCC	5 cut(s)	202, 272, 341, 515, 600
BsiHKAI	GWGCWC	1 cut(s)	663
BslI	CCNNNNNNNGG	2 cut(s)	89, 613
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	5 cut(s)	202, 272, 341, 515, 600
Bsp119I	TTCGAA	2 cut(s)	172, 196
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	4 cut(s)	126, 145, 208, 751
BspACI	CCGC	2 cut(s)	123, 597
BspANI	GGCC	5 cut(s)	202, 272, 341, 515, 600
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	2 cut(s)	299, 597
BspHI	TCATGA	1 cut(s)	1028
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	2 cut(s)	134, 216
BspT104I	TTCGAA	2 cut(s)	172, 196
BsrDI	GCAATG	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	126, 145, 208, 751
Bst4CI	ACNGT	3 cut(s)	152, 220, 384
Bst6I	CTCTTC	4 cut(s)	537, 708, 848, 876
BstAUI	TGTACA	1 cut(s)	1017
BstBAI	YACGTR	1 cut(s)	998
BstBI	TTCGAA	2 cut(s)	172, 196
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	186, 369, 677
BstF5I	GGATG	6 cut(s)	40, 59, 524, 865, 892, 951
BstFNI	CGCG	2 cut(s)	299, 597
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	4 cut(s)	129, 148, 211, 754
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	4 cut(s)	126, 145, 208, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 783
BstNSI	RCATGY	1 cut(s)	875
BstSNI	TACGTA	1 cut(s)	998
BstUI	CGCG	2 cut(s)	299, 597
BstV1I	GCAGC	1 cut(s)	706
BstV2I	GAAGAC	2 cut(s)	393, 470
BstX2I	RGATCY	3 cut(s)	126, 208, 751
BstYI	RGATCY	3 cut(s)	126, 208, 751
BsuRI	GGCC	5 cut(s)	202, 272, 341, 515, 600
BtsCI	GGATG	6 cut(s)	40, 59, 524, 865, 892, 951
BtsI	GCAGTG	2 cut(s)	648, 784
BtsIMutI	CAGTG	2 cut(s)	648, 784
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	1028
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	985, 1018
CviAII	CATG	4 cut(s)	155, 303, 872, 1029
CviQI	GTAC	2 cut(s)	985, 1018
DdeI	CTNAG	3 cut(s)	186, 369, 677
DpnI	GATC	4 cut(s)	128, 147, 210, 753
DpnII	GATC	4 cut(s)	126, 145, 208, 751
EaeI	YGGCCR	2 cut(s)	270, 339
Eam1104I	CTCTTC	4 cut(s)	537, 708, 848, 876
EarI	CTCTTC	4 cut(s)	537, 708, 848, 876
Ecl136II	GAGCTC	1 cut(s)	661
Eco105I	TACGTA	1 cut(s)	998
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	663
Eco53kI	GAGCTC	1 cut(s)	661
EcoICRI	GAGCTC	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	663
FaeI	CATG	4 cut(s)	158, 306, 875, 1032
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	4 cut(s)	154, 302, 871, 1028
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	959
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	598, 720
FokI	GGATG	6 cut(s)	46, 47, 511, 872, 899, 938
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	2 cut(s)	598, 720
FspBI	CTAG	2 cut(s)	396, 429
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	2 cut(s)	598, 720
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	5 cut(s)	202, 272, 341, 515, 600
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	4 cut(s)	158, 306, 875, 1032
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HindIII	AAGCTT	3 cut(s)	110, 281, 414
HphI	GGTGA	2 cut(s)	53, 140
Hpy166II	GTNNAC	3 cut(s)	216, 825, 932
Hpy188I	TCNGA	1 cut(s)	665
Hpy188III	TCNNGA	5 cut(s)	188, 389, 528, 736, 1029
Hpy8I	GTNNAC	3 cut(s)	216, 825, 932
HpyAV	CCTTC	5 cut(s)	15, 192, 298, 541, 607
HpyCH4III	ACNGT	3 cut(s)	152, 220, 384
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	4 cut(s)	133, 335, 641, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 783
HpyF3I	CTNAG	3 cut(s)	186, 369, 677
HpySE526I	ACGT	1 cut(s)	997
Hsp92II	CATG	4 cut(s)	158, 306, 875, 1032
HspAI	GCGC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	126, 145, 208, 751
LmnI	GCTCC	4 cut(s)	97, 136, 658, 666
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	4 cut(s)	69, 250, 795, 852
MaeI	CTAG	2 cut(s)	396, 429
MaeII	ACGT	1 cut(s)	997
MaeIII	GTNAC	2 cut(s)	41, 803
MalI	GATC	4 cut(s)	128, 147, 210, 753
MboI	GATC	4 cut(s)	126, 145, 208, 751
MboII	GAAGA	9 cut(s)	393, 470, 554, 725, 746, 865, 893, 923, 926
MflI	RGATCY	3 cut(s)	126, 208, 751
MhlI	GDGCHC	1 cut(s)	663
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	6 cut(s)	141, 377, 699, 890, 1005, 1024
MluI	ACGCGT	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	475, 937
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	9 cut(s)	25, 184, 358, 503, 513, 699, 709, 849, 877
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	2 cut(s)	153, 876
Msp20I	TGGCCA	1 cut(s)	341
MvnI	CGCG	2 cut(s)	299, 597
MwoI	GCNNNNNNNGC	2 cut(s)	269, 783
NdeI	CATATG	1 cut(s)	959
NdeII	GATC	4 cut(s)	126, 145, 208, 751
NlaIII	CATG	4 cut(s)	158, 306, 875, 1032
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	875
NspV	TTCGAA	2 cut(s)	172, 196
PagI	TCATGA	1 cut(s)	1028
PceI	AGGCCT	1 cut(s)	202
PciI	ACATGT	1 cut(s)	871
PfeI	GAWTC	8 cut(s)	11, 174, 182, 346, 588, 666, 739, 797
PkrI	GCNGC	2 cut(s)	599, 721
PleI	GAGTC	2 cut(s)	474, 936
PpsI	GAGTC	2 cut(s)	474, 936
Ppu21I	YACGTR	1 cut(s)	998
PscI	ACATGT	1 cut(s)	871
Psp124BI	GAGCTC	1 cut(s)	663
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	513
PsuI	RGATCY	3 cut(s)	126, 208, 751
RsaI	GTAC	2 cut(s)	986, 1019
RsaNI	GTAC	2 cut(s)	985, 1018
RseI	CAYNNNNRTG	2 cut(s)	153, 876
SacI	GAGCTC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	2 cut(s)	598, 720
Sau3AI	GATC	4 cut(s)	126, 145, 208, 751
Sau96I	GGNCC	1 cut(s)	513
SchI	GAGTC	2 cut(s)	475, 937
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	4 cut(s)	69, 250, 795, 852
SfuI	TTCGAA	2 cut(s)	172, 196
SmiMI	CAYNNNNRTG	2 cut(s)	153, 876
SnaBI	TACGTA	1 cut(s)	998
Sse9I	AATT	6 cut(s)	141, 377, 699, 890, 1005, 1024
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	123, 597
SspI	AATATT	1 cut(s)	947
SspMI	CTAG	2 cut(s)	396, 429
SstI	GAGCTC	1 cut(s)	663
StuI	AGGCCT	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	152, 220, 384
TaiI	ACGT	1 cut(s)	1000
TaqI	TCGA	4 cut(s)	172, 196, 724, 735
TasI	AATT	6 cut(s)	141, 377, 699, 890, 1005, 1024
TatI	WGTACW	2 cut(s)	984, 1017
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	8 cut(s)	11, 174, 182, 346, 588, 666, 739, 797
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	2 cut(s)	648, 784
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	5 cut(s)	45, 876, 894, 903, 1017
TspRI	CASTG	2 cut(s)	648, 784
XapI	RAATTY	4 cut(s)	699, 890, 1005, 1024
XceI	RCATGY	1 cut(s)	875
XspI	CTAG	2 cut(s)	396, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.