Prupe.8G051500_v2.0.a1

Transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
5622889 .. 5626125
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G051500.1

Sequence Viewer

Length: 1620 bp
ATGGCGTGGTCTGCTATAAAGCGCAGACAATTGGAGGATGGTTTTGGTTCCTTTGAGTTTCAGTTTCAGACCCAGAAGAGGATAAGGTCTTCTAGGGTTTCTGAGACCCAACGGAATGTAGCCGTTGAGGAAAAGTCGACCGTTGGTCTTCCTCTGCGCAAGGGTTTGGCTTCGTCTGCTACAAAAAATGCTGACCCAGAATCAGAAGATCTGGGTTTTGATGAAATCTGTCAGAACCAGAAGAGGAAGAGGTCTTCTAGGGTCTCTGAGACCCAACGGAATGTAGCCGTTGAAAAAAAGTCGACTGTTGGTCTTCCTCTGTGCATGGGTTTGGCTTCGTCTGCTACAAAAAATGCCAACCCGGAATCAGAAGAGGGTTTTGATGAAATCTGTCTAACCCAGAAGAGGAAGAGGTCTTCTGGGGTTTCTGAGACCCAACGGAATGTGGCCGTTGAGGAAAAGTCGACTGTTGGTCTTCCGCTGTGCAAGGGCTTGGCTTCGTCTGCTACAAAAAATGCCAACCCGGAATCAGAAGAGGGTTTTGATGAAATCTGTCAAACTCAGAAGAGGAAGAGGTCTTCTAGGGTTTCTAAGACCCAACGGAAGGAAAAGTCGACTGTTTGTCTTCCTCTGCTCAAAGTCAAAGGTTTGGCTTCGTCTGCTTCAAAAGAGACGTTGGATTGTTCTAAGGTATTGGATTCTCTGATGAACCTCGGCCATGCGAGCTACTTCAACAAGCCTGTTGTTGATCCTGTGGCTGAGAATCTGCCGGGTTATTTCGACGAAATCTGGAGGCCGATGGATTTGGGTACTGTGAAATCGAAATTGGAGAGGGGTGTCTACTCCAGCGCTGATGACTTTGCTGCTGATATCAGGCTTATCTTCTCAAACGCTTTCAGATATTTCCCCCTTGGGAGTAGAAATCGTGCAGCAGCCAAGCATCTCAGTGGGGTTTTTGAGACCCAATGGAAAGAAGCCGAGGAGAAAATGTCAAATGCTTGTCCTCCTCCTACTCCTCCTCTGCCCAAACGGAGACCAAATGGCAAGAGCTCTTCTGCTTGTAGGGTTCTTATGCAAAGTCAAGGGGTTGTTGGGGTTTCTGATTCTCACTCAGTTAAGTCAACCAAAGATGATGATTCTCACTCAGTTAAGTCAACCAAAGATGATGACTTGGGCACCCTTGTTCATCATGCCATGTATCAGGCCACAGACAATCTTTCTCCATGTAAGGCTAGGCGAATTCAGTCGCTCAAGATGCGATTTTCAGGTACAATACGGAAAGCAAACAAGATACTTAAGGGTCTACCTGATTCTCCACCAAGGAGAAAATTGATGCATCGGATGGAGCAAAGGCAATCGGCTCGCCTTGCTATTTTGAACATGGAGAAGTCAGTCCAATTTGAGGACCCTTTAAAGGATCTCAAACAACTTGAGATTCTGTGTGGCTGTGGCAGTGAAAAGGTCTACCTTGGATTGCCCCTTAAGCATTTGGGTTTGTACCTCAAGGAAGATGACGAGTTGCAGGGTCAGGACGAGGAGGCGTTTCTGAATGGAGATTGGGAGGAAGGCGAGATCTGCTGGCAGAAAGGCGATTGGGAGGAAGGTGAGATCCGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

60.1

Weight (kDa)

8.91

Isoelectric Point (pI)

58.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 1175
AccBSI CCGCTC 1 cut(s) 1614
AccI GTMKAC 7 cut(s) 137, 302, 464, 614, 840, 1303, 1464
AciI CCGC 2 cut(s) 479, 1612
AclWI GGATC 3 cut(s) 743, 1425, 1603
AcoI YGGCCR 2 cut(s) 447, 715
AcsI RAATTY 1 cut(s) 1239
AfaI GTAC 3 cut(s) 811, 1270, 1499
AfeI AGCGCT 1 cut(s) 850
AfiI CCNNNNNNNGG 5 cut(s) 78, 405, 604, 1402, 1414
AflII CTTAAG 2 cut(s) 1295, 1481
AgsI TTSAA 4 cut(s) 293, 666, 733, 1378
AhdI GACNNNNNGTC 4 cut(s) 144, 309, 471, 621
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AluBI AGCT 2 cut(s) 726, 1050
AluI AGCT 2 cut(s) 726, 1050
Alw21I GWGCWC 1 cut(s) 1052
Alw26I GTCTC 7 cut(s) 98, 263, 268, 425, 665, 953, 1027
AlwI GGATC 3 cut(s) 743, 1425, 1603
Aor51HI AGCGCT 1 cut(s) 850
AoxI GGCC 4 cut(s) 447, 715, 794, 1203
ApeKI GCWGC 3 cut(s) 863, 929, 932
ApoI RAATTY 1 cut(s) 1239
AspLEI GCGC 3 cut(s) 24, 159, 851
AspS9I GGNCC 1 cut(s) 1405
AsuC2I CCSGG 3 cut(s) 362, 524, 771
AsuHPI GGTGA 1 cut(s) 1616
AvaII GGWCC 1 cut(s) 1405
BaeGI GKGCMC 1 cut(s) 1178
BanI GGYRCC 1 cut(s) 1175
BanII GRGCYC 1 cut(s) 1052
BbsI GAAGAC 8 cut(s) 81, 140, 246, 305, 408, 467, 570, 617
Bbv12I GWGCWC 1 cut(s) 1052
BbvI GCAGC 3 cut(s) 850, 941, 944
BccI CCATC 3 cut(s) 32, 793, 1336
BceAI ACGGC 3 cut(s) 107, 272, 434
BcgI CGANNNNNNTGC 2 cut(s) 1343, 1377
BcnI CCSGG 3 cut(s) 362, 524, 771
BcoDI GTCTC 7 cut(s) 98, 263, 268, 425, 665, 953, 1027
BfaI CTAG 4 cut(s) 93, 258, 582, 1233
BfoI RGCGCY 1 cut(s) 852
BfrI CTTAAG 2 cut(s) 1295, 1481
BglII AGATCT 2 cut(s) 208, 1572
BisI GCNGC 3 cut(s) 864, 930, 933
BlsI GCNGC 3 cut(s) 865, 931, 934
Bme1390I CCNGG 3 cut(s) 362, 524, 771
Bme18I GGWCC 1 cut(s) 1405
BmeRI GACNNNNNGTC 4 cut(s) 144, 309, 471, 621
BmgT120I GGNCC 1 cut(s) 1405
BmiI GGNNCC 3 cut(s) 49, 1177, 1407
BmrFI CCNGG 3 cut(s) 362, 524, 771
BmsI GCATC 4 cut(s) 949, 1245, 1323, 1345
BpiI GAAGAC 8 cut(s) 81, 140, 246, 305, 408, 467, 570, 617
BplI GAGNNNNNCTC 1 cut(s) 1598
BpmI CTGGAG 2 cut(s) 811, 829
BpuEI CTTGAG 3 cut(s) 1235, 1451, 1487
BpuMI CCSGG 3 cut(s) 362, 524, 771
BsaI GGTCTC 6 cut(s) 98, 263, 268, 425, 953, 1027
BsaJI CCNNGG 5 cut(s) 712, 910, 978, 1319, 1468
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 5 cut(s) 78, 405, 604, 1402, 1414
BseDI CCNNGG 5 cut(s) 712, 910, 978, 1319, 1468
BseGI GGATG 2 cut(s) 43, 1347
BseLI CCNNNNNNNGG 5 cut(s) 78, 405, 604, 1402, 1414
BseMII CTCAG 8 cut(s) 93, 258, 420, 575, 750, 958, 1125, 1158
BseRI GAGGAG 5 cut(s) 995, 996, 1005, 1008, 1550
BseSI GKGCMC 1 cut(s) 1178
BseXI GCAGC 3 cut(s) 850, 941, 944
BsgI GTGCAG 1 cut(s) 948
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 449, 717, 796, 1205
BshNI GGYRCC 1 cut(s) 1175
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 1052
BsiSI CCGG 3 cut(s) 362, 524, 770
BslI CCNNNNNNNGG 5 cut(s) 78, 405, 604, 1402, 1414
BsmAI GTCTC 7 cut(s) 98, 263, 268, 425, 665, 953, 1027
BsmBI CGTCTC 1 cut(s) 665
BsnI GGCC 4 cut(s) 449, 717, 796, 1205
Bso31I GGTCTC 6 cut(s) 98, 263, 268, 425, 953, 1027
Bsp1286I GDGCHC 2 cut(s) 1052, 1178
Bsp143I GATC 5 cut(s) 208, 748, 1417, 1572, 1608
BspACI CCGC 2 cut(s) 479, 1612
BspANI GGCC 4 cut(s) 449, 717, 796, 1205
BspCNI CTCAG 8 cut(s) 94, 259, 421, 574, 751, 957, 1124, 1157
BspHI TCATGA 1 cut(s) 1616
BspLI GGNNCC 3 cut(s) 49, 1177, 1407
BspPI GGATC 3 cut(s) 743, 1425, 1603
BspQI GCTCTTC 1 cut(s) 1057
BspT107I GGYRCC 1 cut(s) 1175
BspTI CTTAAG 2 cut(s) 1295, 1481
BspTNI GGTCTC 6 cut(s) 98, 263, 268, 425, 953, 1027
BsrBI CCGCTC 1 cut(s) 1614
BssECI CCNNGG 5 cut(s) 712, 910, 978, 1319, 1468
BssMI GATC 5 cut(s) 208, 748, 1417, 1572, 1608
BssT1I CCWWGG 3 cut(s) 910, 1319, 1468
Bst4CI ACNGT 5 cut(s) 142, 307, 469, 619, 814
BstAFI CTTAAG 2 cut(s) 1295, 1481
BstC8I GCNNGC 3 cut(s) 724, 1363, 1580
BstF5I GGATG 2 cut(s) 43, 1347
BstH2I RGCGCY 1 cut(s) 852
BstHHI GCGC 3 cut(s) 24, 159, 851
BstKTI GATC 5 cut(s) 211, 751, 1420, 1575, 1611
BstMAI GTCTC 7 cut(s) 98, 263, 268, 425, 665, 953, 1027
BstMBI GATC 5 cut(s) 208, 748, 1417, 1572, 1608
BstMCI CGRYCG 1 cut(s) 141
BstSCI CCNGG 3 cut(s) 360, 522, 769
BstSLI GKGCMC 1 cut(s) 1178
BstV1I GCAGC 3 cut(s) 850, 941, 944
BstV2I GAAGAC 8 cut(s) 81, 140, 246, 305, 408, 467, 570, 617
BstX2I RGATCY 4 cut(s) 208, 1417, 1572, 1608
BstYI RGATCY 4 cut(s) 208, 1417, 1572, 1608
BsuRI GGCC 4 cut(s) 449, 717, 796, 1205
BtsCI GGATG 2 cut(s) 43, 1347
BtsI GCAGTG 1 cut(s) 1459
BtsIMutI CAGTG 2 cut(s) 952, 1459
Cac8I GCNNGC 3 cut(s) 724, 1363, 1580
CciI TCATGA 1 cut(s) 1616
CfoI GCGC 3 cut(s) 24, 159, 851
Cfr13I GGNCC 1 cut(s) 1405
Csp6I GTAC 3 cut(s) 810, 1269, 1498
CviAII CATG 7 cut(s) 325, 719, 1190, 1195, 1224, 1381, 1617
CviQI GTAC 3 cut(s) 810, 1269, 1498
DpnI GATC 5 cut(s) 210, 750, 1419, 1574, 1610
DpnII GATC 5 cut(s) 208, 748, 1417, 1572, 1608
DraI TTTAAA 1 cut(s) 1413
DriI GACNNNNNGTC 4 cut(s) 144, 309, 471, 621
EaeI YGGCCR 2 cut(s) 447, 715
Eam1105I GACNNNNNGTC 4 cut(s) 144, 309, 471, 621
Ecl136II GAGCTC 1 cut(s) 1050
Eco130I CCWWGG 3 cut(s) 910, 1319, 1468
Eco24I GRGCYC 1 cut(s) 1052
Eco31I GGTCTC 6 cut(s) 98, 263, 268, 425, 953, 1027
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 1405
Eco47III AGCGCT 1 cut(s) 850
Eco53kI GAGCTC 1 cut(s) 1050
EcoICRI GAGCTC 1 cut(s) 1050
EcoO109I RGGNCCY 1 cut(s) 1405
EcoRI GAATTC 1 cut(s) 1239
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 3 cut(s) 910, 1319, 1468
EcoT22I ATGCAT 1 cut(s) 1338
EcoT38I GRGCYC 1 cut(s) 1052
ErhI CCWWGG 3 cut(s) 910, 1319, 1468
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 7 cut(s) 328, 722, 1193, 1198, 1227, 1384, 1620
FaiI YATR 9 cut(s) 17, 326, 720, 1073, 1191, 1196, 1225, 1382, 1618
FatI CATG 7 cut(s) 324, 718, 1189, 1194, 1223, 1380, 1616
FblI GTMKAC 7 cut(s) 137, 302, 464, 614, 840, 1303, 1464
Fnu4HI GCNGC 3 cut(s) 864, 930, 933
FokI GGATG 2 cut(s) 50, 1354
FriOI GRGCYC 1 cut(s) 1052
Fsp4HI GCNGC 3 cut(s) 864, 930, 933
FspBI CTAG 4 cut(s) 93, 258, 582, 1233
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 3 cut(s) 23, 158, 850
GluI GCNGC 3 cut(s) 864, 930, 933
GsuI CTGGAG 2 cut(s) 811, 829
HaeII RGCGCY 1 cut(s) 852
HaeIII GGCC 4 cut(s) 449, 717, 796, 1205
HapII CCGG 3 cut(s) 362, 524, 770
HhaI GCGC 3 cut(s) 24, 159, 851
Hin1II CATG 7 cut(s) 328, 722, 1193, 1198, 1227, 1384, 1620
Hin6I GCGC 3 cut(s) 22, 157, 849
HinP1I GCGC 3 cut(s) 22, 157, 849
HincII GTYRAC 6 cut(s) 138, 303, 465, 615, 1122, 1155
HindII GTYRAC 6 cut(s) 138, 303, 465, 615, 1122, 1155
HinfI GANTC 9 cut(s) 200, 365, 527, 698, 763, 1103, 1136, 1310, 1435
HpaII CCGG 3 cut(s) 362, 524, 770
HphI GGTGA 1 cut(s) 1616
Hpy166II GTNNAC 9 cut(s) 138, 303, 465, 615, 841, 1122, 1155, 1304, 1465
Hpy188III TCNNGA 4 cut(s) 790, 1252, 1529, 1617
Hpy8I GTNNAC 9 cut(s) 138, 303, 465, 615, 841, 1122, 1155, 1304, 1465
Hpy99I CGWCG 1 cut(s) 785
HpyAV CCTTC 3 cut(s) 598, 1559, 1595
HpyCH4III ACNGT 5 cut(s) 142, 307, 469, 619, 814
HpyCH4IV ACGT 1 cut(s) 674
HpyCH4V TGCA 6 cut(s) 324, 486, 929, 1075, 1336, 1522
HpySE526I ACGT 1 cut(s) 674
Hsp92II CATG 7 cut(s) 328, 722, 1193, 1198, 1227, 1384, 1620
HspAI GCGC 3 cut(s) 22, 157, 849
Kzo9I GATC 5 cut(s) 208, 748, 1417, 1572, 1608
LguI GCTCTTC 1 cut(s) 1057
LmnI GCTCC 1 cut(s) 1345
Lsp1109I GCAGC 3 cut(s) 850, 941, 944
LweI GCATC 4 cut(s) 949, 1245, 1323, 1345
MaeI CTAG 4 cut(s) 93, 258, 582, 1233
MaeII ACGT 1 cut(s) 674
MalI GATC 5 cut(s) 210, 750, 1419, 1574, 1610
MbiI CCGCTC 1 cut(s) 1614
MboI GATC 5 cut(s) 208, 748, 1417, 1572, 1608
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 4 cut(s) 208, 1417, 1572, 1608
MhlI GDGCHC 2 cut(s) 1052, 1178
MluCI AATT 5 cut(s) 29, 824, 1239, 1328, 1397
MmeI TCCRAC 1 cut(s) 657
Mph1103I ATGCAT 1 cut(s) 1338
MseI TTAA 5 cut(s) 1116, 1149, 1296, 1412, 1482
MslI CAYNNNNRTG 1 cut(s) 945
MspA1I CMGCKG 1 cut(s) 481
MspCI CTTAAG 2 cut(s) 1295, 1481
MspI CCGG 3 cut(s) 362, 524, 770
MspR9I CCNGG 3 cut(s) 362, 524, 771
MunI CAATTG 1 cut(s) 29
NciI CCSGG 3 cut(s) 362, 524, 771
NdeII GATC 5 cut(s) 208, 748, 1417, 1572, 1608
NlaIII CATG 7 cut(s) 328, 722, 1193, 1198, 1227, 1384, 1620
NlaIV GGNNCC 3 cut(s) 49, 1177, 1407
NmeAIII GCCGAG 2 cut(s) 693, 1003
NsbI TGCGCA 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 1338
PagI TCATGA 1 cut(s) 1616
PciSI GCTCTTC 1 cut(s) 1057
PfeI GAWTC 9 cut(s) 200, 365, 527, 698, 763, 1103, 1136, 1310, 1435
PkrI GCNGC 3 cut(s) 865, 931, 934
PpuMI RGGWCCY 1 cut(s) 1405
Psp124BI GAGCTC 1 cut(s) 1052
Psp5II RGGWCCY 1 cut(s) 1405
PspN4I GGNNCC 3 cut(s) 49, 1177, 1407
PspPI GGNCC 1 cut(s) 1405
PspPPI RGGWCCY 1 cut(s) 1405
PsuI RGATCY 4 cut(s) 208, 1417, 1572, 1608
RsaI GTAC 3 cut(s) 811, 1270, 1499
RsaNI GTAC 3 cut(s) 810, 1269, 1498
RseI CAYNNNNRTG 1 cut(s) 945
SacI GAGCTC 1 cut(s) 1052
SalI GTCGAC 4 cut(s) 136, 301, 463, 613
SapI GCTCTTC 1 cut(s) 1057
SaqAI TTAA 5 cut(s) 1116, 1149, 1296, 1412, 1482
SatI GCNGC 3 cut(s) 864, 930, 933
Sau3AI GATC 5 cut(s) 208, 748, 1417, 1572, 1608
Sau96I GGNCC 1 cut(s) 1405
ScrFI CCNGG 3 cut(s) 362, 524, 771
SduI GDGCHC 2 cut(s) 1052, 1178
SfaNI GCATC 4 cut(s) 949, 1245, 1323, 1345
SinI GGWCC 1 cut(s) 1405
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 5 cut(s) 1250, 1295, 1430, 1481, 1502
SmoI CTYRAG 5 cut(s) 1250, 1295, 1430, 1481, 1502
Sse9I AATT 5 cut(s) 29, 824, 1239, 1328, 1397
SsiI CCGC 2 cut(s) 479, 1612
SspMI CTAG 4 cut(s) 93, 258, 582, 1233
SstI GAGCTC 1 cut(s) 1052
StyD4I CCNGG 3 cut(s) 360, 522, 769
StyI CCWWGG 3 cut(s) 910, 1319, 1468
TaaI ACNGT 5 cut(s) 142, 307, 469, 619, 814
TaiI ACGT 1 cut(s) 677
TaqI TCGA 6 cut(s) 137, 302, 464, 614, 780, 821
TasI AATT 5 cut(s) 29, 824, 1239, 1328, 1397
TfiI GAWTC 9 cut(s) 200, 365, 527, 698, 763, 1103, 1136, 1310, 1435
Tru1I TTAA 5 cut(s) 1116, 1149, 1296, 1412, 1482
Tru9I TTAA 5 cut(s) 1116, 1149, 1296, 1412, 1482
TscAI CASTG 2 cut(s) 952, 1459
TseI GCWGC 3 cut(s) 863, 929, 932
TspDTI ATGAA 5 cut(s) 237, 399, 561, 722, 1175
TspGWI ACGGA 6 cut(s) 127, 292, 454, 616, 1045, 1291
TspRI CASTG 2 cut(s) 952, 1459
Vha464I CTTAAG 2 cut(s) 1295, 1481
VpaK11BI GGWCC 1 cut(s) 1405
XapI RAATTY 1 cut(s) 1239
XmiI GTMKAC 7 cut(s) 137, 302, 464, 614, 840, 1303, 1464
XspI CTAG 4 cut(s) 93, 258, 582, 1233
Zsp2I ATGCAT 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.