Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 1 cut(s) | 1175 |
| AccBSI | CCGCTC | 1 cut(s) | 1614 |
| AccI | GTMKAC | 7 cut(s) | 137, 302, 464, 614, 840, 1303, 1464 |
| AciI | CCGC | 2 cut(s) | 479, 1612 |
| AclWI | GGATC | 3 cut(s) | 743, 1425, 1603 |
| AcoI | YGGCCR | 2 cut(s) | 447, 715 |
| AcsI | RAATTY | 1 cut(s) | 1239 |
| AfaI | GTAC | 3 cut(s) | 811, 1270, 1499 |
| AfeI | AGCGCT | 1 cut(s) | 850 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 78, 405, 604, 1402, 1414 |
| AflII | CTTAAG | 2 cut(s) | 1295, 1481 |
| AgsI | TTSAA | 4 cut(s) | 293, 666, 733, 1378 |
| AhdI | GACNNNNNGTC | 4 cut(s) | 144, 309, 471, 621 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 809, 841 |
| AluBI | AGCT | 2 cut(s) | 726, 1050 |
| AluI | AGCT | 2 cut(s) | 726, 1050 |
| Alw21I | GWGCWC | 1 cut(s) | 1052 |
| Alw26I | GTCTC | 7 cut(s) | 98, 263, 268, 425, 665, 953, 1027 |
| AlwI | GGATC | 3 cut(s) | 743, 1425, 1603 |
| Aor51HI | AGCGCT | 1 cut(s) | 850 |
| AoxI | GGCC | 4 cut(s) | 447, 715, 794, 1203 |
| ApeKI | GCWGC | 3 cut(s) | 863, 929, 932 |
| ApoI | RAATTY | 1 cut(s) | 1239 |
| AspLEI | GCGC | 3 cut(s) | 24, 159, 851 |
| AspS9I | GGNCC | 1 cut(s) | 1405 |
| AsuC2I | CCSGG | 3 cut(s) | 362, 524, 771 |
| AsuHPI | GGTGA | 1 cut(s) | 1616 |
| AvaII | GGWCC | 1 cut(s) | 1405 |
| BaeGI | GKGCMC | 1 cut(s) | 1178 |
| BanI | GGYRCC | 1 cut(s) | 1175 |
| BanII | GRGCYC | 1 cut(s) | 1052 |
| BbsI | GAAGAC | 8 cut(s) | 81, 140, 246, 305, 408, 467, 570, 617 |
| Bbv12I | GWGCWC | 1 cut(s) | 1052 |
| BbvI | GCAGC | 3 cut(s) | 850, 941, 944 |
| BccI | CCATC | 3 cut(s) | 32, 793, 1336 |
| BceAI | ACGGC | 3 cut(s) | 107, 272, 434 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1343, 1377 |
| BcnI | CCSGG | 3 cut(s) | 362, 524, 771 |
| BcoDI | GTCTC | 7 cut(s) | 98, 263, 268, 425, 665, 953, 1027 |
| BfaI | CTAG | 4 cut(s) | 93, 258, 582, 1233 |
| BfoI | RGCGCY | 1 cut(s) | 852 |
| BfrI | CTTAAG | 2 cut(s) | 1295, 1481 |
| BglII | AGATCT | 2 cut(s) | 208, 1572 |
| BisI | GCNGC | 3 cut(s) | 864, 930, 933 |
| BlsI | GCNGC | 3 cut(s) | 865, 931, 934 |
| Bme1390I | CCNGG | 3 cut(s) | 362, 524, 771 |
| Bme18I | GGWCC | 1 cut(s) | 1405 |
| BmeRI | GACNNNNNGTC | 4 cut(s) | 144, 309, 471, 621 |
| BmgT120I | GGNCC | 1 cut(s) | 1405 |
| BmiI | GGNNCC | 3 cut(s) | 49, 1177, 1407 |
| BmrFI | CCNGG | 3 cut(s) | 362, 524, 771 |
| BmsI | GCATC | 4 cut(s) | 949, 1245, 1323, 1345 |
| BpiI | GAAGAC | 8 cut(s) | 81, 140, 246, 305, 408, 467, 570, 617 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1598 |
| BpmI | CTGGAG | 2 cut(s) | 811, 829 |
| BpuEI | CTTGAG | 3 cut(s) | 1235, 1451, 1487 |
| BpuMI | CCSGG | 3 cut(s) | 362, 524, 771 |
| BsaI | GGTCTC | 6 cut(s) | 98, 263, 268, 425, 953, 1027 |
| BsaJI | CCNNGG | 5 cut(s) | 712, 910, 978, 1319, 1468 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 974, 1004 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 78, 405, 604, 1402, 1414 |
| BseDI | CCNNGG | 5 cut(s) | 712, 910, 978, 1319, 1468 |
| BseGI | GGATG | 2 cut(s) | 43, 1347 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 78, 405, 604, 1402, 1414 |
| BseMII | CTCAG | 8 cut(s) | 93, 258, 420, 575, 750, 958, 1125, 1158 |
| BseRI | GAGGAG | 5 cut(s) | 995, 996, 1005, 1008, 1550 |
| BseSI | GKGCMC | 1 cut(s) | 1178 |
| BseXI | GCAGC | 3 cut(s) | 850, 941, 944 |
| BsgI | GTGCAG | 1 cut(s) | 948 |
| Bsh1285I | CGRYCG | 1 cut(s) | 141 |
| BshFI | GGCC | 4 cut(s) | 449, 717, 796, 1205 |
| BshNI | GGYRCC | 1 cut(s) | 1175 |
| BsiEI | CGRYCG | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1052 |
| BsiSI | CCGG | 3 cut(s) | 362, 524, 770 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 78, 405, 604, 1402, 1414 |
| BsmAI | GTCTC | 7 cut(s) | 98, 263, 268, 425, 665, 953, 1027 |
| BsmBI | CGTCTC | 1 cut(s) | 665 |
| BsnI | GGCC | 4 cut(s) | 449, 717, 796, 1205 |
| Bso31I | GGTCTC | 6 cut(s) | 98, 263, 268, 425, 953, 1027 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1052, 1178 |
| Bsp143I | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| BspACI | CCGC | 2 cut(s) | 479, 1612 |
| BspANI | GGCC | 4 cut(s) | 449, 717, 796, 1205 |
| BspCNI | CTCAG | 8 cut(s) | 94, 259, 421, 574, 751, 957, 1124, 1157 |
| BspHI | TCATGA | 1 cut(s) | 1616 |
| BspLI | GGNNCC | 3 cut(s) | 49, 1177, 1407 |
| BspPI | GGATC | 3 cut(s) | 743, 1425, 1603 |
| BspQI | GCTCTTC | 1 cut(s) | 1057 |
| BspT107I | GGYRCC | 1 cut(s) | 1175 |
| BspTI | CTTAAG | 2 cut(s) | 1295, 1481 |
| BspTNI | GGTCTC | 6 cut(s) | 98, 263, 268, 425, 953, 1027 |
| BsrBI | CCGCTC | 1 cut(s) | 1614 |
| BssECI | CCNNGG | 5 cut(s) | 712, 910, 978, 1319, 1468 |
| BssMI | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| BssT1I | CCWWGG | 3 cut(s) | 910, 1319, 1468 |
| Bst4CI | ACNGT | 5 cut(s) | 142, 307, 469, 619, 814 |
| BstAFI | CTTAAG | 2 cut(s) | 1295, 1481 |
| BstC8I | GCNNGC | 3 cut(s) | 724, 1363, 1580 |
| BstF5I | GGATG | 2 cut(s) | 43, 1347 |
| BstH2I | RGCGCY | 1 cut(s) | 852 |
| BstHHI | GCGC | 3 cut(s) | 24, 159, 851 |
| BstKTI | GATC | 5 cut(s) | 211, 751, 1420, 1575, 1611 |
| BstMAI | GTCTC | 7 cut(s) | 98, 263, 268, 425, 665, 953, 1027 |
| BstMBI | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| BstMCI | CGRYCG | 1 cut(s) | 141 |
| BstSCI | CCNGG | 3 cut(s) | 360, 522, 769 |
| BstSLI | GKGCMC | 1 cut(s) | 1178 |
| BstV1I | GCAGC | 3 cut(s) | 850, 941, 944 |
| BstV2I | GAAGAC | 8 cut(s) | 81, 140, 246, 305, 408, 467, 570, 617 |
| BstX2I | RGATCY | 4 cut(s) | 208, 1417, 1572, 1608 |
| BstYI | RGATCY | 4 cut(s) | 208, 1417, 1572, 1608 |
| BsuRI | GGCC | 4 cut(s) | 449, 717, 796, 1205 |
| BtsCI | GGATG | 2 cut(s) | 43, 1347 |
| BtsI | GCAGTG | 1 cut(s) | 1459 |
| BtsIMutI | CAGTG | 2 cut(s) | 952, 1459 |
| Cac8I | GCNNGC | 3 cut(s) | 724, 1363, 1580 |
| CciI | TCATGA | 1 cut(s) | 1616 |
| CfoI | GCGC | 3 cut(s) | 24, 159, 851 |
| Cfr13I | GGNCC | 1 cut(s) | 1405 |
| Csp6I | GTAC | 3 cut(s) | 810, 1269, 1498 |
| CviAII | CATG | 7 cut(s) | 325, 719, 1190, 1195, 1224, 1381, 1617 |
| CviQI | GTAC | 3 cut(s) | 810, 1269, 1498 |
| DpnI | GATC | 5 cut(s) | 210, 750, 1419, 1574, 1610 |
| DpnII | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| DraI | TTTAAA | 1 cut(s) | 1413 |
| DriI | GACNNNNNGTC | 4 cut(s) | 144, 309, 471, 621 |
| EaeI | YGGCCR | 2 cut(s) | 447, 715 |
| Eam1105I | GACNNNNNGTC | 4 cut(s) | 144, 309, 471, 621 |
| Ecl136II | GAGCTC | 1 cut(s) | 1050 |
| Eco130I | CCWWGG | 3 cut(s) | 910, 1319, 1468 |
| Eco24I | GRGCYC | 1 cut(s) | 1052 |
| Eco31I | GGTCTC | 6 cut(s) | 98, 263, 268, 425, 953, 1027 |
| Eco32I | GATATC | 1 cut(s) | 871 |
| Eco47I | GGWCC | 1 cut(s) | 1405 |
| Eco47III | AGCGCT | 1 cut(s) | 850 |
| Eco53kI | GAGCTC | 1 cut(s) | 1050 |
| EcoICRI | GAGCTC | 1 cut(s) | 1050 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1405 |
| EcoRI | GAATTC | 1 cut(s) | 1239 |
| EcoRV | GATATC | 1 cut(s) | 871 |
| EcoT14I | CCWWGG | 3 cut(s) | 910, 1319, 1468 |
| EcoT22I | ATGCAT | 1 cut(s) | 1338 |
| EcoT38I | GRGCYC | 1 cut(s) | 1052 |
| ErhI | CCWWGG | 3 cut(s) | 910, 1319, 1468 |
| Esp3I | CGTCTC | 1 cut(s) | 665 |
| FaeI | CATG | 7 cut(s) | 328, 722, 1193, 1198, 1227, 1384, 1620 |
| FaiI | YATR | 9 cut(s) | 17, 326, 720, 1073, 1191, 1196, 1225, 1382, 1618 |
| FatI | CATG | 7 cut(s) | 324, 718, 1189, 1194, 1223, 1380, 1616 |
| FblI | GTMKAC | 7 cut(s) | 137, 302, 464, 614, 840, 1303, 1464 |
| Fnu4HI | GCNGC | 3 cut(s) | 864, 930, 933 |
| FokI | GGATG | 2 cut(s) | 50, 1354 |
| FriOI | GRGCYC | 1 cut(s) | 1052 |
| Fsp4HI | GCNGC | 3 cut(s) | 864, 930, 933 |
| FspBI | CTAG | 4 cut(s) | 93, 258, 582, 1233 |
| FspI | TGCGCA | 1 cut(s) | 158 |
| GlaI | GCGC | 3 cut(s) | 23, 158, 850 |
| GluI | GCNGC | 3 cut(s) | 864, 930, 933 |
| GsuI | CTGGAG | 2 cut(s) | 811, 829 |
| HaeII | RGCGCY | 1 cut(s) | 852 |
| HaeIII | GGCC | 4 cut(s) | 449, 717, 796, 1205 |
| HapII | CCGG | 3 cut(s) | 362, 524, 770 |
| HhaI | GCGC | 3 cut(s) | 24, 159, 851 |
| Hin1II | CATG | 7 cut(s) | 328, 722, 1193, 1198, 1227, 1384, 1620 |
| Hin6I | GCGC | 3 cut(s) | 22, 157, 849 |
| HinP1I | GCGC | 3 cut(s) | 22, 157, 849 |
| HincII | GTYRAC | 6 cut(s) | 138, 303, 465, 615, 1122, 1155 |
| HindII | GTYRAC | 6 cut(s) | 138, 303, 465, 615, 1122, 1155 |
| HinfI | GANTC | 9 cut(s) | 200, 365, 527, 698, 763, 1103, 1136, 1310, 1435 |
| HpaII | CCGG | 3 cut(s) | 362, 524, 770 |
| HphI | GGTGA | 1 cut(s) | 1616 |
| Hpy166II | GTNNAC | 9 cut(s) | 138, 303, 465, 615, 841, 1122, 1155, 1304, 1465 |
| Hpy188III | TCNNGA | 4 cut(s) | 790, 1252, 1529, 1617 |
| Hpy8I | GTNNAC | 9 cut(s) | 138, 303, 465, 615, 841, 1122, 1155, 1304, 1465 |
| Hpy99I | CGWCG | 1 cut(s) | 785 |
| HpyAV | CCTTC | 3 cut(s) | 598, 1559, 1595 |
| HpyCH4III | ACNGT | 5 cut(s) | 142, 307, 469, 619, 814 |
| HpyCH4IV | ACGT | 1 cut(s) | 674 |
| HpyCH4V | TGCA | 6 cut(s) | 324, 486, 929, 1075, 1336, 1522 |
| HpySE526I | ACGT | 1 cut(s) | 674 |
| Hsp92II | CATG | 7 cut(s) | 328, 722, 1193, 1198, 1227, 1384, 1620 |
| HspAI | GCGC | 3 cut(s) | 22, 157, 849 |
| Kzo9I | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| LguI | GCTCTTC | 1 cut(s) | 1057 |
| LmnI | GCTCC | 1 cut(s) | 1345 |
| Lsp1109I | GCAGC | 3 cut(s) | 850, 941, 944 |
| LweI | GCATC | 4 cut(s) | 949, 1245, 1323, 1345 |
| MaeI | CTAG | 4 cut(s) | 93, 258, 582, 1233 |
| MaeII | ACGT | 1 cut(s) | 674 |
| MalI | GATC | 5 cut(s) | 210, 750, 1419, 1574, 1610 |
| MbiI | CCGCTC | 1 cut(s) | 1614 |
| MboI | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| MfeI | CAATTG | 1 cut(s) | 29 |
| MflI | RGATCY | 4 cut(s) | 208, 1417, 1572, 1608 |
| MhlI | GDGCHC | 2 cut(s) | 1052, 1178 |
| MluCI | AATT | 5 cut(s) | 29, 824, 1239, 1328, 1397 |
| MmeI | TCCRAC | 1 cut(s) | 657 |
| Mph1103I | ATGCAT | 1 cut(s) | 1338 |
| MseI | TTAA | 5 cut(s) | 1116, 1149, 1296, 1412, 1482 |
| MslI | CAYNNNNRTG | 1 cut(s) | 945 |
| MspA1I | CMGCKG | 1 cut(s) | 481 |
| MspCI | CTTAAG | 2 cut(s) | 1295, 1481 |
| MspI | CCGG | 3 cut(s) | 362, 524, 770 |
| MspR9I | CCNGG | 3 cut(s) | 362, 524, 771 |
| MunI | CAATTG | 1 cut(s) | 29 |
| NciI | CCSGG | 3 cut(s) | 362, 524, 771 |
| NdeII | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| NlaIII | CATG | 7 cut(s) | 328, 722, 1193, 1198, 1227, 1384, 1620 |
| NlaIV | GGNNCC | 3 cut(s) | 49, 1177, 1407 |
| NmeAIII | GCCGAG | 2 cut(s) | 693, 1003 |
| NsbI | TGCGCA | 1 cut(s) | 158 |
| NsiI | ATGCAT | 1 cut(s) | 1338 |
| PagI | TCATGA | 1 cut(s) | 1616 |
| PciSI | GCTCTTC | 1 cut(s) | 1057 |
| PfeI | GAWTC | 9 cut(s) | 200, 365, 527, 698, 763, 1103, 1136, 1310, 1435 |
| PkrI | GCNGC | 3 cut(s) | 865, 931, 934 |
| PpuMI | RGGWCCY | 1 cut(s) | 1405 |
| Psp124BI | GAGCTC | 1 cut(s) | 1052 |
| Psp5II | RGGWCCY | 1 cut(s) | 1405 |
| PspN4I | GGNNCC | 3 cut(s) | 49, 1177, 1407 |
| PspPI | GGNCC | 1 cut(s) | 1405 |
| PspPPI | RGGWCCY | 1 cut(s) | 1405 |
| PsuI | RGATCY | 4 cut(s) | 208, 1417, 1572, 1608 |
| RsaI | GTAC | 3 cut(s) | 811, 1270, 1499 |
| RsaNI | GTAC | 3 cut(s) | 810, 1269, 1498 |
| RseI | CAYNNNNRTG | 1 cut(s) | 945 |
| SacI | GAGCTC | 1 cut(s) | 1052 |
| SalI | GTCGAC | 4 cut(s) | 136, 301, 463, 613 |
| SapI | GCTCTTC | 1 cut(s) | 1057 |
| SaqAI | TTAA | 5 cut(s) | 1116, 1149, 1296, 1412, 1482 |
| SatI | GCNGC | 3 cut(s) | 864, 930, 933 |
| Sau3AI | GATC | 5 cut(s) | 208, 748, 1417, 1572, 1608 |
| Sau96I | GGNCC | 1 cut(s) | 1405 |
| ScrFI | CCNGG | 3 cut(s) | 362, 524, 771 |
| SduI | GDGCHC | 2 cut(s) | 1052, 1178 |
| SfaNI | GCATC | 4 cut(s) | 949, 1245, 1323, 1345 |
| SinI | GGWCC | 1 cut(s) | 1405 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 945 |
| SmlI | CTYRAG | 5 cut(s) | 1250, 1295, 1430, 1481, 1502 |
| SmoI | CTYRAG | 5 cut(s) | 1250, 1295, 1430, 1481, 1502 |
| Sse9I | AATT | 5 cut(s) | 29, 824, 1239, 1328, 1397 |
| SsiI | CCGC | 2 cut(s) | 479, 1612 |
| SspMI | CTAG | 4 cut(s) | 93, 258, 582, 1233 |
| SstI | GAGCTC | 1 cut(s) | 1052 |
| StyD4I | CCNGG | 3 cut(s) | 360, 522, 769 |
| StyI | CCWWGG | 3 cut(s) | 910, 1319, 1468 |
| TaaI | ACNGT | 5 cut(s) | 142, 307, 469, 619, 814 |
| TaiI | ACGT | 1 cut(s) | 677 |
| TaqI | TCGA | 6 cut(s) | 137, 302, 464, 614, 780, 821 |
| TasI | AATT | 5 cut(s) | 29, 824, 1239, 1328, 1397 |
| TfiI | GAWTC | 9 cut(s) | 200, 365, 527, 698, 763, 1103, 1136, 1310, 1435 |
| Tru1I | TTAA | 5 cut(s) | 1116, 1149, 1296, 1412, 1482 |
| Tru9I | TTAA | 5 cut(s) | 1116, 1149, 1296, 1412, 1482 |
| TscAI | CASTG | 2 cut(s) | 952, 1459 |
| TseI | GCWGC | 3 cut(s) | 863, 929, 932 |
| TspDTI | ATGAA | 5 cut(s) | 237, 399, 561, 722, 1175 |
| TspGWI | ACGGA | 6 cut(s) | 127, 292, 454, 616, 1045, 1291 |
| TspRI | CASTG | 2 cut(s) | 952, 1459 |
| Vha464I | CTTAAG | 2 cut(s) | 1295, 1481 |
| VpaK11BI | GGWCC | 1 cut(s) | 1405 |
| XapI | RAATTY | 1 cut(s) | 1239 |
| XmiI | GTMKAC | 7 cut(s) | 137, 302, 464, 614, 840, 1303, 1464 |
| XspI | CTAG | 4 cut(s) | 93, 258, 582, 1233 |
| Zsp2I | ATGCAT | 1 cut(s) | 1338 |