Rorug02G0254400

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000736
Physical Location & Seq
Reverse (-)
26666895 .. 26667621
727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0254400.1

Sequence Viewer

Length: 306 bp
ATGAAAACTTCATCATCATCAGCAGTTGATCAGGAGCAGCACAGAGAACAACGACACCGTTTCTGCATCCCCGTCTGCCATTTCTTTGAGCAACTCATTAAGGCTTGCCTCAACTGCCTGGGACTCGATGACTACTCCGCCGCTCAATACGATCATATAGTTTTAATGGCTGATCCTCCTCCTGAGAACGCACGAGAAATGAAATGCAGCGAAGATGAGGGAACGAGGTCAGGAACAGAGGGAGAGTTAAGAACAGGGGTAAAAGAACCACATGTCCACTCTGGTCATGGTGCACAGATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

101

Amino Acids

11.31

Weight (kDa)

5.55

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep1_7 PF17232 10 - 50 5.9e-06 Elicitor peptide 1-7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AciI CCGC 2 cut(s) 138, 141
AclWI GGATC 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 117
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
Alw21I GWGCWC 1 cut(s) 295
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 1 cut(s) 167
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 37, 207
BaeGI GKGCMC 1 cut(s) 295
BauI CACGAG 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 2 cut(s) 49, 219
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 1 cut(s) 28
BisI GCNGC 3 cut(s) 38, 141, 208
BlsI GCNGC 3 cut(s) 39, 142, 209
Bme1390I CCNGG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 2 cut(s) 49, 219
BsiHKAI GWGCWC 1 cut(s) 295
BslFI GGGAC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 3 cut(s) 28, 151, 172
BspACI CCGC 2 cut(s) 138, 141
BspCNI CTCAG 1 cut(s) 175
BspPI GGATC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 3 cut(s) 28, 151, 172
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 3 cut(s) 31, 154, 175
BstMBI GATC 3 cut(s) 28, 151, 172
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 49, 219
BtsCI GGATG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 106
CviAII CATG 2 cut(s) 272, 287
CviJI RGCY 2 cut(s) 104, 170
CviKI_1 RGCY 2 cut(s) 104, 170
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 30, 153, 174
DpnII GATC 3 cut(s) 28, 151, 172
EciI GGCGGA 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 275, 290
FaiI YATR 4 cut(s) 156, 158, 273, 288
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 271, 286
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 38, 141, 208
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 38, 141, 208
GluI GCNGC 3 cut(s) 38, 141, 208
Hin1II CATG 2 cut(s) 275, 290
HinfI GANTC 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 277, 293
Hpy188III TCNNGA 3 cut(s) 32, 182, 231
Hpy8I GTNNAC 2 cut(s) 277, 293
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 66, 207, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 275, 290
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 3 cut(s) 28, 151, 172
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 17, 104, 131, 195, 216, 240, 267
Lsp1109I GCAGC 2 cut(s) 49, 219
LweI GCATC 1 cut(s) 75
MalI GATC 3 cut(s) 30, 153, 174
MbiI CCGCTC 1 cut(s) 143
MboI GATC 3 cut(s) 28, 151, 172
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 295
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 6 cut(s) 119, 186, 189, 211, 219, 232
MseI TTAA 4 cut(s) 99, 164, 248, 300
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 3 cut(s) 28, 151, 172
NlaIII CATG 2 cut(s) 275, 290
NspI RCATGY 1 cut(s) 275
PciI ACATGT 1 cut(s) 271
PkrI GCNGC 3 cut(s) 39, 142, 209
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PscI ACATGT 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
SaqAI TTAA 4 cut(s) 99, 164, 248, 300
SatI GCNGC 3 cut(s) 38, 141, 208
Sau3AI GATC 3 cut(s) 28, 151, 172
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 295
SetI ASST 1 cut(s) 230
SfaNI GCATC 1 cut(s) 75
SsiI CCGC 2 cut(s) 138, 141
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 126
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 4 cut(s) 99, 164, 248, 300
Tru9I TTAA 4 cut(s) 99, 164, 248, 300
TseI GCWGC 2 cut(s) 37, 207
TspDTI ATGAA 2 cut(s) 17, 215
VneI GTGCAC 1 cut(s) 291
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.