Prupe.3G132800_v2.0.a1

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000736
Physical Location & Seq
Forward (+)
13801235 .. 13803056
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G132800.1

Sequence Viewer

Length: 1161 bp
ATGGCGTTGTCTACTCGAAATGGAAAGCGCAGACAATTCGAAGATGGTGTTGGTCCCTTTGAGAAGAGGAAGAGGTCTTGTTCTAGGGTTTCTGAGCCCAAACGGAATGAAGCCGTGGAGGAAAAGCCGACTGCTTGTCTTCCTCTGCGCAAGTCTTCGTCACCCAAACAGGGCAAGAAAATCATCCCTTTGGCTTCGTCTGCTAGAAAGCCTAGACAATCCGAGGAGGAATTGGGTTTTGATGGTCTCTGTCAGACCCAGAAGAGCAAGAGGCAAAAACTGGGTTTTGACTGCAAAGAGACGATGTATTGTTCTAAAGTCTTGGTTTATCTGATGAATCTCCCCCATGCGAGGTGTTTCGAGAAGCCTGTTGTCGATCCTGTGGCCGAGAATTTGCCTGGTTATTTCGAAGAAATCTGGAGGCCTATGGATTTCGGTACTGTGAAATCCAAATTGGAGAGGGGTGCCTACTCCAGCGCTGATGGCTTTGCTGCTGATGTCAGGCTTATCTTCTCCAACGCTTTCAGATATTATCCGCTTGGGAGGAAAGAGCGTGCAGCAGCCAAGCATCTCAATGGGGTTTTTGAGACCAAGTGGAAAGAAGCTGTGGAGAAAAAGTCAAAGGCTGTTTGTCCTTATCCTCTGCCCAAAGTTGAGGGTTTGTCACCCAAACTGAAGCAGGGCAAGAGCTCTTCTCCTTCCAGGGTTAATCTTCAAAGTCAAGGGCTTGGGGTTTCCCATTCAACCAAAGATGATGACTTGGCCACCCTTGTTCAACATGCCATGGATCAGGCCTCAGAGAATCTTTATCCATGTGGGGCTAGTCGAATTCAGTTACTAAAGCTACAATTTTCAGATACGATATTAAAAGCCAACAAGACACTTAAGGGGCTACCTGATTCTCCACCAAGGACAAAATTGATGCAGCGGATGAAGCAAAGGAAATTGGCTCGCCGTGCCATTTTGAACTTGGAGAAGTCAGTGCAATTTGAGGACTCTTTACAGGATCTCAAACAACTTGAGATGCTGTGTGGCTGTGGCAGTGGAGATACTTTTCTACAGGTACACCTTGGATTGCCGCTTAAGAAGTTGGGTCTATACCTCAAGGAAGACGATGAATTGCAAGGTCAGGATGGGAAGACCTTTTTGAATGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

387

Amino Acids

43.32

Weight (kDa)

9.53

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 464
AccI GTMKAC 1 cut(s) 11
AciI CCGC 3 cut(s) 536, 928, 1079
AclWI GGATC 3 cut(s) 371, 795, 1014
AcoI YGGCCR 2 cut(s) 384, 762
AcsI RAATTY 2 cut(s) 391, 828
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 2 cut(s) 439, 1065
AfeI AGCGCT 1 cut(s) 478
AfiI CCNNNNNNNGG 2 cut(s) 170, 351
AflII CTTAAG 2 cut(s) 884, 1082
AgsI TTSAA 5 cut(s) 716, 744, 776, 967, 1150
AhdI GACNNNNNGTC 1 cut(s) 135
AjnI CCWGG 2 cut(s) 397, 701
AjuI GAANNNNNNNTTGG 4 cut(s) 33, 65, 437, 469
AluBI AGCT 3 cut(s) 605, 690, 844
AluI AGCT 3 cut(s) 605, 690, 844
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 3 cut(s) 251, 293, 581
AlwI GGATC 3 cut(s) 371, 795, 1014
Aor51HI AGCGCT 1 cut(s) 478
AoxI GGCC 4 cut(s) 384, 422, 762, 792
ApeKI GCWGC 4 cut(s) 491, 557, 560, 925
ApoI RAATTY 2 cut(s) 391, 828
AspLEI GCGC 3 cut(s) 30, 150, 479
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 153, 657
AsuII TTCGAA 2 cut(s) 39, 408
AvaII GGWCC 1 cut(s) 53
BalI TGGCCA 1 cut(s) 764
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 2 cut(s) 99, 692
BbsI GAAGAC 4 cut(s) 131, 147, 1116, 1145
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 4 cut(s) 478, 569, 572, 937
BccI CCATC 4 cut(s) 38, 236, 476, 1127
BceAI ACGGC 2 cut(s) 98, 939
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 399, 703
BcoDI GTCTC 3 cut(s) 251, 293, 581
BfaI CTAG 4 cut(s) 84, 204, 213, 822
BfmI CTRYAG 1 cut(s) 1058
BfoI RGCGCY 1 cut(s) 480
BfrI CTTAAG 2 cut(s) 884, 1082
BisI GCNGC 5 cut(s) 492, 558, 561, 926, 1079
BlsI GCNGC 5 cut(s) 493, 559, 562, 927, 1080
Bme1390I CCNGG 2 cut(s) 399, 703
Bme18I GGWCC 1 cut(s) 53
BmeRI GACNNNNNGTC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 55, 466
BmrFI CCNGG 2 cut(s) 399, 703
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 3 cut(s) 577, 912, 1014
BmuI ACTGGG 1 cut(s) 290
BpiI GAAGAC 4 cut(s) 131, 147, 1116, 1145
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpmI CTGGAG 2 cut(s) 439, 457
Bpu14I TTCGAA 2 cut(s) 39, 408
BpuEI CTTGAG 2 cut(s) 1040, 1088
BsaI GGTCTC 2 cut(s) 251, 581
BsaJI CCNNGG 6 cut(s) 114, 222, 702, 783, 908, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 351
Bse1I ACTGG 1 cut(s) 285
BseBI CCWGG 2 cut(s) 399, 703
BseDI CCNNGG 6 cut(s) 114, 222, 702, 783, 908, 1069
BseGI GGATG 3 cut(s) 183, 936, 1138
BseLI CCNNNNNNNGG 2 cut(s) 170, 351
BseMII CTCAG 2 cut(s) 84, 810
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 4 cut(s) 478, 569, 572, 937
BsgI GTGCAG 1 cut(s) 576
BshFI GGCC 4 cut(s) 386, 424, 764, 794
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 692
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 170, 351
BsmAI GTCTC 3 cut(s) 251, 293, 581
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 4 cut(s) 386, 424, 764, 794
Bso31I GGTCTC 2 cut(s) 251, 581
Bsp119I TTCGAA 2 cut(s) 39, 408
Bsp1286I GDGCHC 2 cut(s) 99, 692
Bsp143I GATC 3 cut(s) 376, 787, 1006
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 3 cut(s) 536, 928, 1079
BspANI GGCC 4 cut(s) 386, 424, 764, 794
BspCNI CTCAG 2 cut(s) 85, 809
BspLI GGNNCC 2 cut(s) 55, 466
BspPI GGATC 3 cut(s) 371, 795, 1014
BspQI GCTCTTC 2 cut(s) 257, 697
BspT104I TTCGAA 2 cut(s) 39, 408
BspT107I GGYRCC 1 cut(s) 464
BspTI CTTAAG 2 cut(s) 884, 1082
BspTNI GGTCTC 2 cut(s) 251, 581
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 6 cut(s) 114, 222, 702, 783, 908, 1069
BssMI GATC 3 cut(s) 376, 787, 1006
BssT1I CCWWGG 3 cut(s) 783, 908, 1069
Bst2UI CCWGG 2 cut(s) 399, 703
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 4 cut(s) 59, 65, 257, 697
BstAFI CTTAAG 2 cut(s) 884, 1082
BstBI TTCGAA 2 cut(s) 39, 408
BstC8I GCNNGC 2 cut(s) 555, 952
BstDEI CTNAG 2 cut(s) 93, 796
BstDSI CCRYGG 2 cut(s) 114, 783
BstF5I GGATG 3 cut(s) 183, 936, 1138
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 3 cut(s) 30, 150, 479
BstKTI GATC 3 cut(s) 379, 790, 1009
BstMAI GTCTC 3 cut(s) 251, 293, 581
BstMBI GATC 3 cut(s) 376, 787, 1006
BstMWI GCNNNNNNNGC 4 cut(s) 200, 483, 934, 956
BstNI CCWGG 2 cut(s) 399, 703
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 2 cut(s) 397, 701
BstSFI CTRYAG 1 cut(s) 1058
BstV1I GCAGC 4 cut(s) 478, 569, 572, 937
BstV2I GAAGAC 4 cut(s) 131, 147, 1116, 1145
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
BsuRI GGCC 4 cut(s) 386, 424, 764, 794
BtgI CCRYGG 2 cut(s) 114, 783
BtsCI GGATG 3 cut(s) 183, 936, 1138
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 2 cut(s) 987, 1048
Cac8I GCNNGC 2 cut(s) 555, 952
CfoI GCGC 3 cut(s) 30, 150, 479
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 438, 1064
CviAII CATG 4 cut(s) 347, 779, 784, 813
CviQI GTAC 2 cut(s) 438, 1064
DdeI CTNAG 2 cut(s) 93, 796
DpnI GATC 3 cut(s) 378, 789, 1008
DpnII GATC 3 cut(s) 376, 787, 1006
DriI GACNNNNNGTC 1 cut(s) 135
EaeI YGGCCR 2 cut(s) 384, 762
Eam1104I CTCTTC 4 cut(s) 59, 65, 257, 697
Eam1105I GACNNNNNGTC 1 cut(s) 135
EarI CTCTTC 4 cut(s) 59, 65, 257, 697
Ecl136II GAGCTC 1 cut(s) 690
Eco130I CCWWGG 3 cut(s) 783, 908, 1069
Eco147I AGGCCT 2 cut(s) 424, 794
Eco24I GRGCYC 2 cut(s) 99, 692
Eco31I GGTCTC 2 cut(s) 251, 581
Eco47I GGWCC 1 cut(s) 53
Eco47III AGCGCT 1 cut(s) 478
Eco53kI GAGCTC 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 828
EcoRII CCWGG 2 cut(s) 397, 701
EcoT14I CCWWGG 3 cut(s) 783, 908, 1069
EcoT38I GRGCYC 2 cut(s) 99, 692
ErhI CCWWGG 3 cut(s) 783, 908, 1069
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 4 cut(s) 350, 782, 787, 816
FaiI YATR 6 cut(s) 348, 428, 780, 785, 814, 1099
FaqI GGGAC 1 cut(s) 39
FatI CATG 4 cut(s) 346, 778, 783, 812
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 5 cut(s) 492, 558, 561, 926, 1079
FokI GGATG 3 cut(s) 170, 943, 1145
FriOI GRGCYC 2 cut(s) 99, 692
Fsp4HI GCNGC 5 cut(s) 492, 558, 561, 926, 1079
FspBI CTAG 4 cut(s) 84, 204, 213, 822
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 3 cut(s) 29, 149, 478
GluI GCNGC 5 cut(s) 492, 558, 561, 926, 1079
GsuI CTGGAG 2 cut(s) 439, 457
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 4 cut(s) 386, 424, 764, 794
HhaI GCGC 3 cut(s) 30, 150, 479
Hin1II CATG 4 cut(s) 350, 782, 787, 816
Hin6I GCGC 3 cut(s) 28, 148, 477
HinP1I GCGC 3 cut(s) 28, 148, 477
HinfI GANTC 4 cut(s) 337, 802, 899, 995
HphI GGTGA 2 cut(s) 153, 657
Hpy166II GTNNAC 2 cut(s) 12, 1066
Hpy188I TCNGA 7 cut(s) 94, 223, 255, 333, 527, 799, 856
Hpy188III TCNNGA 3 cut(s) 361, 418, 1130
Hpy8I GTNNAC 2 cut(s) 12, 1066
HpyAV CCTTC 1 cut(s) 708
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 5 cut(s) 294, 557, 925, 985, 1123
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 483, 934, 956
HpyF3I CTNAG 2 cut(s) 93, 796
Hsp92II CATG 4 cut(s) 350, 782, 787, 816
HspAI GCGC 3 cut(s) 28, 148, 477
Kzo9I GATC 3 cut(s) 376, 787, 1006
LguI GCTCTTC 2 cut(s) 257, 697
Lsp1109I GCAGC 4 cut(s) 478, 569, 572, 937
LweI GCATC 3 cut(s) 577, 912, 1014
MaeI CTAG 4 cut(s) 84, 204, 213, 822
MaeIII GTNAC 3 cut(s) 159, 663, 834
MalI GATC 3 cut(s) 378, 789, 1008
MboI GATC 3 cut(s) 376, 787, 1006
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 2 cut(s) 99, 692
MlsI TGGCCA 1 cut(s) 764
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 1 cut(s) 989
MmeI TCCRAC 1 cut(s) 540
Mox20I TGGCCA 1 cut(s) 764
MscI TGGCCA 1 cut(s) 764
MseI TTAA 4 cut(s) 708, 866, 885, 1083
MslI CAYNNNNRTG 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 928
MspCI CTTAAG 2 cut(s) 884, 1082
MspR9I CCNGG 2 cut(s) 399, 703
MvaI CCWGG 2 cut(s) 399, 703
MwoI GCNNNNNNNGC 4 cut(s) 200, 483, 934, 956
NcoI CCATGG 1 cut(s) 783
NdeII GATC 3 cut(s) 376, 787, 1006
NlaIII CATG 4 cut(s) 350, 782, 787, 816
NlaIV GGNNCC 2 cut(s) 55, 466
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 2 cut(s) 159, 663
NsbI TGCGCA 1 cut(s) 149
NspI RCATGY 1 cut(s) 782
NspV TTCGAA 2 cut(s) 39, 408
PceI AGGCCT 2 cut(s) 424, 794
PciSI GCTCTTC 2 cut(s) 257, 697
PfeI GAWTC 3 cut(s) 337, 802, 899
PkrI GCNGC 5 cut(s) 493, 559, 562, 927, 1080
PleI GAGTC 1 cut(s) 989
PpsI GAGTC 1 cut(s) 989
Psp124BI GAGCTC 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 397, 701
PspGI CCWGG 2 cut(s) 397, 701
PspN4I GGNNCC 2 cut(s) 55, 466
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 1006
RsaI GTAC 2 cut(s) 439, 1065
RsaNI GTAC 2 cut(s) 438, 1064
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 692
SapI GCTCTTC 2 cut(s) 257, 697
SaqAI TTAA 4 cut(s) 708, 866, 885, 1083
SatI GCNGC 5 cut(s) 492, 558, 561, 926, 1079
Sau3AI GATC 3 cut(s) 376, 787, 1006
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 989
ScrFI CCNGG 2 cut(s) 399, 703
SduI GDGCHC 2 cut(s) 99, 692
SfaNI GCATC 3 cut(s) 577, 912, 1014
SfcI CTRYAG 1 cut(s) 1058
SfuI TTCGAA 2 cut(s) 39, 408
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 4 cut(s) 884, 1019, 1082, 1103
SmoI CTYRAG 4 cut(s) 884, 1019, 1082, 1103
SseBI AGGCCT 2 cut(s) 424, 794
SsiI CCGC 3 cut(s) 536, 928, 1079
SspMI CTAG 4 cut(s) 84, 204, 213, 822
SstI GAGCTC 1 cut(s) 692
StuI AGGCCT 2 cut(s) 424, 794
StyD4I CCNGG 2 cut(s) 397, 701
StyI CCWWGG 3 cut(s) 783, 908, 1069
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 6 cut(s) 16, 39, 360, 375, 408, 826
TauI GCSGC 1 cut(s) 1081
TfiI GAWTC 3 cut(s) 337, 802, 899
Tru1I TTAA 4 cut(s) 708, 866, 885, 1083
Tru9I TTAA 4 cut(s) 708, 866, 885, 1083
TscAI CASTG 2 cut(s) 987, 1048
TseFI GTSAC 2 cut(s) 159, 663
TseI GCWGC 4 cut(s) 491, 557, 560, 925
Tsp45I GTSAC 2 cut(s) 159, 663
TspDTI ATGAA 4 cut(s) 123, 350, 947, 1131
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 2 cut(s) 987, 1048
Vha464I CTTAAG 2 cut(s) 884, 1082
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 2 cut(s) 391, 828
XceI RCATGY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 967
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 4 cut(s) 84, 204, 213, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.