Rh2DG455800

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000736
Physical Location & Seq
Reverse (-)
65912431 .. 65913727
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG455800.1

Sequence Viewer

Length: 1161 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTCATGGTATTACTCTCTTGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTGTGCTAGTTTGGATAGGTCTGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTACTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACCAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACCAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAACTTGTTGTGCACTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGACAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAACATGTTTATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGATGGAGAACAGAGTCCACAAACAACGAAATATTACATCCACATATGGTGGCATATCATCATCATCAAGTACATACTGCTACGTAGCAAAATTTATTCTATGTACAAAAATTCATGTAATGGTGACAGAAACTTTGACTGTTATCAAAATGAGATTTCTGCTTTTTGCTCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

386

Amino Acids

44.52

Weight (kDa)

9.1

Isoelectric Point (pI)

58.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 114 1.3e-10 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 299, 588, 666
AciI CCGC 3 cut(s) 123, 588, 666
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 4 cut(s) 768, 959, 1074, 1093
AfaI GTAC 3 cut(s) 555, 1055, 1088
AfiI CCNNNNNNNGG 3 cut(s) 89, 604, 682
AflIII ACRYGT 2 cut(s) 297, 940
AgsI TTSAA 8 cut(s) 405, 412, 464, 782, 799, 827, 922, 938
AjuI GAANNNNNNNTTGG 2 cut(s) 951, 983
AluBI AGCT 6 cut(s) 76, 112, 139, 283, 416, 730
AluI AGCT 6 cut(s) 76, 112, 139, 283, 416, 730
Alw21I GWGCWC 2 cut(s) 732, 848
Alw26I GTCTC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 844
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 6 cut(s) 200, 270, 339, 489, 589, 667
ApaLI GTGCAC 1 cut(s) 844
ApeKI GCWGC 1 cut(s) 788
ApoI RAATTY 4 cut(s) 768, 959, 1074, 1093
ArsI GACNNNNNNTTYG 2 cut(s) 1100, 1132
AspLEI GCGC 2 cut(s) 588, 666
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 3 cut(s) 53, 140, 1118
AsuII TTCGAA 2 cut(s) 172, 196
BaeGI GKGCMC 1 cut(s) 848
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 732
BbsI GAAGAC 2 cut(s) 393, 452
Bbv12I GWGCWC 2 cut(s) 732, 848
BbvI GCAGC 1 cut(s) 775
BccI CCATC 1 cut(s) 980
BceAI ACGGC 1 cut(s) 758
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 396, 429
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 820
BisI GCNGC 3 cut(s) 589, 667, 789
BlsI GCNGC 3 cut(s) 590, 668, 790
BmcAI AGTACT 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 490
BmsI GCATC 4 cut(s) 69, 250, 864, 921
BpiI GAAGAC 2 cut(s) 393, 452
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 746
Bpu14I TTCGAA 2 cut(s) 172, 196
BsaAI YACGTR 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 604, 682
Bse1I ACTGG 3 cut(s) 252, 561, 853
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 6 cut(s) 40, 59, 500, 934, 961, 1020
BseLI CCNNNNNNNGG 3 cut(s) 89, 604, 682
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 252, 561, 853
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 1 cut(s) 775
BsgI GTGCAG 3 cut(s) 570, 651, 729
Bsh1236I CGCG 3 cut(s) 299, 588, 666
BshFI GGCC 6 cut(s) 202, 272, 341, 491, 591, 669
BsiHKAI GWGCWC 2 cut(s) 732, 848
BslI CCNNNNNNNGG 3 cut(s) 89, 604, 682
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 6 cut(s) 202, 272, 341, 491, 591, 669
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 2 cut(s) 732, 848
Bsp1407I TGTACA 1 cut(s) 1086
Bsp143I GATC 4 cut(s) 126, 145, 208, 820
BspACI CCGC 3 cut(s) 123, 588, 666
BspANI GGCC 6 cut(s) 202, 272, 341, 491, 591, 669
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 3 cut(s) 299, 588, 666
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 1086
BsrI ACTGG 3 cut(s) 252, 561, 853
BssMI GATC 4 cut(s) 126, 145, 208, 820
Bst4CI ACNGT 4 cut(s) 152, 220, 384, 1124
Bst6I CTCTTC 4 cut(s) 513, 777, 917, 945
BstAUI TGTACA 1 cut(s) 1086
BstBAI YACGTR 1 cut(s) 1067
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 746
BstF5I GGATG 6 cut(s) 40, 59, 500, 934, 961, 1020
BstFNI CGCG 3 cut(s) 299, 588, 666
BstHHI GCGC 2 cut(s) 588, 666
BstKTI GATC 4 cut(s) 129, 148, 211, 823
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 4 cut(s) 126, 145, 208, 820
BstMWI GCNNNNNNNGC 2 cut(s) 269, 852
BstNSI RCATGY 1 cut(s) 944
BstSLI GKGCMC 1 cut(s) 848
BstSNI TACGTA 1 cut(s) 1067
BstUI CGCG 3 cut(s) 299, 588, 666
BstV1I GCAGC 1 cut(s) 775
BstV2I GAAGAC 2 cut(s) 393, 452
BstX2I RGATCY 3 cut(s) 126, 208, 820
BstYI RGATCY 3 cut(s) 126, 208, 820
BsuRI GGCC 6 cut(s) 202, 272, 341, 491, 591, 669
BtsCI GGATG 6 cut(s) 40, 59, 500, 934, 961, 1020
BtsI GCAGTG 2 cut(s) 639, 717
BtsIMutI CAGTG 3 cut(s) 639, 717, 846
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 2 cut(s) 588, 666
Cfr13I GGNCC 1 cut(s) 489
CseI GACGC 1 cut(s) 288
Csp6I GTAC 3 cut(s) 554, 1054, 1087
CviAII CATG 4 cut(s) 155, 303, 941, 1098
CviQI GTAC 3 cut(s) 554, 1054, 1087
DdeI CTNAG 3 cut(s) 186, 369, 746
DpnI GATC 4 cut(s) 128, 147, 210, 822
DpnII GATC 4 cut(s) 126, 145, 208, 820
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 4 cut(s) 513, 777, 917, 945
EarI CTCTTC 4 cut(s) 513, 777, 917, 945
Ecl136II GAGCTC 1 cut(s) 730
Eco105I TACGTA 1 cut(s) 1067
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 732
Eco53kI GAGCTC 1 cut(s) 730
EcoICRI GAGCTC 1 cut(s) 730
EcoT38I GRGCYC 1 cut(s) 732
FaeI CATG 4 cut(s) 158, 306, 944, 1101
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 4 cut(s) 154, 302, 940, 1097
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 1028
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 589, 667, 789
FokI GGATG 6 cut(s) 46, 47, 487, 941, 968, 1007
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 3 cut(s) 589, 667, 789
FspBI CTAG 2 cut(s) 396, 429
GlaI GCGC 2 cut(s) 587, 665
GluI GCNGC 3 cut(s) 589, 667, 789
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 6 cut(s) 202, 272, 341, 491, 591, 669
HgaI GACGC 1 cut(s) 288
HhaI GCGC 2 cut(s) 588, 666
Hin1II CATG 4 cut(s) 158, 306, 944, 1101
Hin6I GCGC 2 cut(s) 586, 664
HinP1I GCGC 2 cut(s) 586, 664
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 3 cut(s) 110, 281, 414
HphI GGTGA 3 cut(s) 53, 140, 1118
Hpy166II GTNNAC 4 cut(s) 216, 846, 894, 1001
Hpy188I TCNGA 1 cut(s) 734
Hpy188III TCNNGA 4 cut(s) 188, 389, 504, 805
Hpy8I GTNNAC 4 cut(s) 216, 846, 894, 1001
HpyAV CCTTC 6 cut(s) 15, 192, 298, 517, 598, 676
HpyCH4III ACNGT 4 cut(s) 152, 220, 384, 1124
HpyCH4IV ACGT 1 cut(s) 1066
HpyCH4V TGCA 6 cut(s) 133, 335, 551, 632, 710, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 852
HpyF3I CTNAG 3 cut(s) 186, 369, 746
HpySE526I ACGT 1 cut(s) 1066
Hsp92II CATG 4 cut(s) 158, 306, 944, 1101
HspAI GCGC 2 cut(s) 586, 664
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 820
LmnI GCTCC 5 cut(s) 97, 136, 727, 735, 1157
Lsp1109I GCAGC 1 cut(s) 775
LweI GCATC 4 cut(s) 69, 250, 864, 921
MaeI CTAG 2 cut(s) 396, 429
MaeII ACGT 1 cut(s) 1066
MaeIII GTNAC 3 cut(s) 41, 872, 1106
MalI GATC 4 cut(s) 128, 147, 210, 822
MboI GATC 4 cut(s) 126, 145, 208, 820
MboII GAAGA 9 cut(s) 393, 452, 530, 794, 815, 934, 962, 992, 995
MflI RGATCY 3 cut(s) 126, 208, 820
MhlI GDGCHC 2 cut(s) 732, 848
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 6 cut(s) 141, 377, 768, 959, 1074, 1093
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 2 cut(s) 457, 1006
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 358, 479, 489, 768, 778, 918, 946
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 455
MslI CAYNNNNRTG 2 cut(s) 153, 945
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 3 cut(s) 299, 588, 666
MwoI GCNNNNNNNGC 2 cut(s) 269, 852
NdeI CATATG 1 cut(s) 1028
NdeII GATC 4 cut(s) 126, 145, 208, 820
NlaIII CATG 4 cut(s) 158, 306, 944, 1101
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 41, 1106
NspI RCATGY 1 cut(s) 944
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 940
PfeI GAWTC 9 cut(s) 11, 174, 182, 346, 579, 657, 735, 808, 866
PkrI GCNGC 3 cut(s) 590, 668, 790
PleI GAGTC 2 cut(s) 456, 1005
PpsI GAGTC 2 cut(s) 456, 1005
Ppu21I YACGTR 1 cut(s) 1067
PscI ACATGT 1 cut(s) 940
Psp124BI GAGCTC 1 cut(s) 732
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 489
PsuI RGATCY 3 cut(s) 126, 208, 820
RsaI GTAC 3 cut(s) 555, 1055, 1088
RsaNI GTAC 3 cut(s) 554, 1054, 1087
RseI CAYNNNNRTG 2 cut(s) 153, 945
SacI GAGCTC 1 cut(s) 732
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 3 cut(s) 589, 667, 789
Sau3AI GATC 4 cut(s) 126, 145, 208, 820
Sau96I GGNCC 1 cut(s) 489
ScaI AGTACT 1 cut(s) 555
SchI GAGTC 2 cut(s) 457, 1006
SduI GDGCHC 2 cut(s) 732, 848
SfaNI GCATC 4 cut(s) 69, 250, 864, 921
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 2 cut(s) 153, 945
SnaBI TACGTA 1 cut(s) 1067
Sse9I AATT 6 cut(s) 141, 377, 768, 959, 1074, 1093
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 123, 588, 666
SspI AATATT 1 cut(s) 1016
SspMI CTAG 2 cut(s) 396, 429
SstI GAGCTC 1 cut(s) 732
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 4 cut(s) 152, 220, 384, 1124
TaiI ACGT 1 cut(s) 1069
TaqI TCGA 4 cut(s) 172, 196, 793, 804
TasI AATT 6 cut(s) 141, 377, 768, 959, 1074, 1093
TatI WGTACW 3 cut(s) 553, 1053, 1086
TauI GCSGC 2 cut(s) 591, 669
TfiI GAWTC 9 cut(s) 11, 174, 182, 346, 579, 657, 735, 808, 866
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 3 cut(s) 639, 717, 853
TseFI GTSAC 2 cut(s) 41, 1106
TseI GCWGC 1 cut(s) 788
Tsp45I GTSAC 2 cut(s) 41, 1106
TspDTI ATGAA 5 cut(s) 45, 945, 963, 972, 1086
TspRI CASTG 3 cut(s) 639, 717, 853
VneI GTGCAC 1 cut(s) 844
XapI RAATTY 4 cut(s) 768, 959, 1074, 1093
XceI RCATGY 1 cut(s) 944
XspI CTAG 2 cut(s) 396, 429
ZrmI AGTACT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.