MD09G1193800.v1.1

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000736
Physical Location & Seq
Forward (+)
17367779 .. 17368867
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1193800.v1.1.491

Sequence Viewer

Length: 1089 bp
ATGGCTTGGTCTGACAGAAAGCGCGGGCAGATGGAATCGGAATCGGAGCCCTTTGAATTTCAGAGGCGGTGGGCCGAGAAGAGGCAAAAGAGGCAGGGCTTGGACCCCAAATTGAAGGCCTGCTGTGCTGAAATCTTGCAGCTTCTGATGCAGCACGGACATGGGAAGCAATTTGCGAAGCGCGTTGATCCCGTGGTGTCGAAGTTGCCAGATTATCTCTACGTCATCCGGAAGCCGATTGATCTGGGTACTATCAAGTCCGACTTGGAAAAGGGTTACTACTCCAGCGCCGATTCCTTTGCCGCTGATGTGAGGCGGGTGTTCTTGAATGCCATGATCTATTACCCTCGAGGGAATTATGTCCGCGCAGCCGCCCAGCATCTCAGTAATCTATTTAACACAAAGTGGGAAGAAACCATGGCCAAATTCTCAGTTCATCTGCCACCACCCAAGGCCAAGGGTTTGTCGTCTTTGTCGTCCTTCTCACCTGAACACATACATGGCGGTAAGACCGAGACCTGTTCTTCTTCTTCTTCTACTTCTACGGTTATTCAAAGTCGAGGGCTTTTTGGGGTTCATTCAACTGCAAACACCGATGGCAAAGACAATGACTTTGTCATTACCACTCTCATTGTTGAACATTCTGGACATTCTGATGCAACTGTCACTGAGAAGAGCAGAGGACCAAGAGAAGGGAGAGTTGAGTTGCTGAAGCTTCGATTTTCAGATACCTTGTCGAAAGCTAACAAGATCTTAAAAGGTCTACCCGACTCTCCTCCCGAACAGAGGACCAAGAGAAGGGAGGCCCTCAGAAAATCAGCTCGGCGTAGGATTTCGAGTATGCAAAAGTCTGTGATGTTTGATCATGATTCAAAACACTATCTCAGGGAACTTGAGAAGTTGTGCGGGTGTGGCAGTAAAGATCCTTTTCTCAACATTCGACAAGGATTTCCTCTCAAGGACTTGGGTTTGCACATTAAGGATGAAGAATATGACTTGCAAGGTCTGGATGAGGACGTCTTTCTCAACGGAGATTGGGAGGAAGGCGAGATCATTGGGGGACATTGGGAGGAAGGAGAGATACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

363

Amino Acids

41.09

Weight (kDa)

8.77

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 42 - 126 8.5e-17 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1020
AbsI CCTCGAGG 1 cut(s) 348
AccI GTMKAC 1 cut(s) 763
AccII CGCG 3 cut(s) 24, 183, 366
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 8 cut(s) 24, 67, 303, 316, 364, 372, 504, 906
AclWI GGATC 2 cut(s) 182, 917
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 2 cut(s) 56, 425
AcuI CTGAAG 1 cut(s) 731
AcyI GRCGYC 1 cut(s) 1017
AdeI CACNNNGTG 1 cut(s) 405
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 4 cut(s) 81, 692, 786, 798
AgsI TTSAA 7 cut(s) 56, 115, 328, 554, 582, 638, 873
AluBI AGCT 4 cut(s) 142, 715, 743, 821
AluI AGCT 4 cut(s) 142, 715, 743, 821
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 2 cut(s) 182, 917
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 348
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 5 cut(s) 72, 117, 420, 453, 804
ApeKI GCWGC 3 cut(s) 139, 151, 368
ApoI RAATTY 2 cut(s) 56, 425
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
AspLEI GCGC 4 cut(s) 24, 183, 290, 368
AspS9I GGNCC 5 cut(s) 72, 103, 683, 789, 805
AsuHPI GGTGA 1 cut(s) 477
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 3 cut(s) 103, 683, 789
BalI TGGCCA 1 cut(s) 422
BanII GRGCYC 1 cut(s) 51
BarI GAAGNNNNNNTAC 1 cut(s) 1065
BbvI GCAGC 3 cut(s) 151, 163, 380
BccI CCATC 2 cut(s) 25, 590
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 291
BglII AGATCT 1 cut(s) 750
BisI GCNGC 5 cut(s) 140, 152, 303, 369, 372
BlsI GCNGC 5 cut(s) 141, 153, 304, 370, 373
Bme18I GGWCC 3 cut(s) 103, 683, 789
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 5 cut(s) 72, 103, 683, 789, 805
BmiI GGNNCC 2 cut(s) 48, 105
BmsI GCATC 3 cut(s) 138, 388, 646
BpmI CTGGAG 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 914, 941
BsaHI GRCGYC 1 cut(s) 1017
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 192, 417, 450, 456
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 692, 786, 798
BseAI TCCGGA 1 cut(s) 228
BseDI CCNNGG 4 cut(s) 192, 417, 450, 456
BseGI GGATG 3 cut(s) 225, 988, 1015
BseLI CCNNNNNNNGG 4 cut(s) 81, 692, 786, 798
BseMII CTCAG 5 cut(s) 397, 444, 660, 823, 898
BseRI GAGGAG 1 cut(s) 765
BseXI GCAGC 3 cut(s) 151, 163, 380
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 3 cut(s) 24, 183, 366
BshFI GGCC 5 cut(s) 74, 119, 422, 455, 806
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 1074
BslI CCNNNNNNNGG 4 cut(s) 81, 692, 786, 798
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 1074
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 5 cut(s) 74, 119, 422, 455, 806
Bso31I GGTCTC 1 cut(s) 509
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 8 cut(s) 24, 67, 303, 316, 364, 372, 504, 906
BspANI GGCC 5 cut(s) 74, 119, 422, 455, 806
BspCNI CTCAG 5 cut(s) 396, 443, 661, 822, 897
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 3 cut(s) 24, 183, 366
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 2 cut(s) 48, 105
BspPI GGATC 2 cut(s) 182, 917
BspQI GCTCTTC 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 509
BssECI CCNNGG 4 cut(s) 192, 417, 450, 456
BssMI GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
BssNI GRCGYC 1 cut(s) 1017
BssT1I CCWWGG 3 cut(s) 417, 450, 456
Bst4CI ACNGT 2 cut(s) 547, 664
Bst6I CTCTTC 2 cut(s) 74, 668
BstACI GRCGYC 1 cut(s) 1017
BstC8I GCNNGC 2 cut(s) 26, 121
BstDEI CTNAG 5 cut(s) 383, 430, 669, 809, 884
BstDSI CCRYGG 2 cut(s) 192, 417
BstF5I GGATG 3 cut(s) 225, 988, 1015
BstFNI CGCG 3 cut(s) 24, 183, 366
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 4 cut(s) 24, 183, 290, 368
BstKTI GATC 7 cut(s) 190, 244, 339, 753, 865, 925, 1053
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
BstMWI GCNNNNNNNGC 4 cut(s) 91, 125, 148, 912
BstUI CGCG 3 cut(s) 24, 183, 366
BstV1I GCAGC 3 cut(s) 151, 163, 380
BstX2I RGATCY 2 cut(s) 750, 922
BstYI RGATCY 2 cut(s) 750, 922
BsuRI GGCC 5 cut(s) 74, 119, 422, 455, 806
BtgI CCRYGG 2 cut(s) 192, 417
BtsCI GGATG 3 cut(s) 225, 988, 1015
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 26, 121
CaiI CAGNNNCTG 1 cut(s) 145
CciI TCATGA 1 cut(s) 865
CfoI GCGC 4 cut(s) 24, 183, 290, 368
Cfr13I GGNCC 5 cut(s) 72, 103, 683, 789, 805
Csp6I GTAC 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviAII CATG 5 cut(s) 161, 334, 418, 500, 866
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 5 cut(s) 383, 430, 669, 809, 884
DpnI GATC 7 cut(s) 189, 243, 338, 752, 864, 924, 1052
DpnII GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
DraIII CACNNNGTG 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 74, 668
EarI CTCTTC 2 cut(s) 74, 668
Eco130I CCWWGG 3 cut(s) 417, 450, 456
Eco147I AGGCCT 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 509
Eco47I GGWCC 3 cut(s) 103, 683, 789
Eco57I CTGAAG 1 cut(s) 731
Eco88I CYCGRG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 805
EcoT14I CCWWGG 3 cut(s) 417, 450, 456
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 3 cut(s) 417, 450, 456
FaeI CATG 5 cut(s) 164, 337, 421, 503, 869
FaiI YATR 9 cut(s) 162, 335, 360, 419, 497, 501, 842, 867, 993
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 1074
FatI CATG 5 cut(s) 160, 333, 417, 499, 865
FauI CCCGC 3 cut(s) 17, 309, 899
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 5 cut(s) 140, 152, 303, 369, 372
FokI GGATG 3 cut(s) 212, 995, 1022
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 5 cut(s) 140, 152, 303, 369, 372
GlaI GCGC 4 cut(s) 23, 182, 289, 367
GluI GCNGC 5 cut(s) 140, 152, 303, 369, 372
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 268
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 5 cut(s) 74, 119, 422, 455, 806
HapII CCGG 1 cut(s) 229
HhaI GCGC 4 cut(s) 24, 183, 290, 368
Hin1I GRCGYC 1 cut(s) 1017
Hin1II CATG 5 cut(s) 164, 337, 421, 503, 869
Hin6I GCGC 4 cut(s) 22, 181, 288, 366
HinP1I GCGC 4 cut(s) 22, 181, 288, 366
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 5 cut(s) 35, 41, 293, 770, 869
HpaII CCGG 1 cut(s) 229
HphI GGTGA 1 cut(s) 477
Hpy166II GTNNAC 1 cut(s) 764
Hpy188I TCNGA 9 cut(s) 13, 40, 46, 63, 147, 262, 655, 727, 812
Hpy188III TCNNGA 6 cut(s) 229, 325, 645, 779, 866, 1007
Hpy8I GTNNAC 1 cut(s) 764
HpyAV CCTTC 6 cut(s) 109, 490, 686, 792, 1037, 1067
HpyCH4III ACNGT 2 cut(s) 547, 664
HpyCH4IV ACGT 2 cut(s) 222, 1017
HpyCH4V TGCA 7 cut(s) 139, 151, 587, 659, 844, 973, 1000
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 125, 148, 912
HpyF3I CTNAG 5 cut(s) 383, 430, 669, 809, 884
HpySE526I ACGT 2 cut(s) 222, 1017
Hsp92I GRCGYC 1 cut(s) 1017
Hsp92II CATG 5 cut(s) 164, 337, 421, 503, 869
HspAI GCGC 4 cut(s) 22, 181, 288, 366
Kpn2I TCCGGA 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
LguI GCTCTTC 1 cut(s) 668
LmnI GCTCC 1 cut(s) 46
Lsp1109I GCAGC 3 cut(s) 151, 163, 380
LweI GCATC 3 cut(s) 138, 388, 646
MaeII ACGT 2 cut(s) 222, 1017
MaeIII GTNAC 2 cut(s) 275, 664
MalI GATC 7 cut(s) 189, 243, 338, 752, 864, 924, 1052
MboI GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
MboII GAAGA 8 cut(s) 91, 422, 516, 519, 522, 525, 685, 998
MflI RGATCY 2 cut(s) 750, 922
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 5 cut(s) 56, 110, 170, 355, 425
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 422
MroI TCCGGA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 422
MseI TTAA 4 cut(s) 396, 755, 978, 1087
MslI CAYNNNNRTG 3 cut(s) 159, 498, 654
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 334
MvnI CGCG 3 cut(s) 24, 183, 366
MwoI GCNNNNNNNGC 4 cut(s) 91, 125, 148, 912
NcoI CCATGG 1 cut(s) 417
NdeII GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
NlaIII CATG 5 cut(s) 164, 337, 421, 503, 869
NlaIV GGNNCC 2 cut(s) 48, 105
NmeAIII GCCGAG 2 cut(s) 100, 802
NmuCI GTSAC 1 cut(s) 664
PaeR7I CTCGAG 1 cut(s) 348
PagI TCATGA 1 cut(s) 865
PceI AGGCCT 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 4 cut(s) 35, 41, 293, 869
PflFI GACNNNGTC 1 cut(s) 614
PkrI GCNGC 5 cut(s) 141, 153, 304, 370, 373
PleI GAGTC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 48, 105
PspPI GGNCC 5 cut(s) 72, 103, 683, 789, 805
PspXI VCTCGAGB 1 cut(s) 348
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 750, 922
PsyI GACNNNGTC 1 cut(s) 614
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 3 cut(s) 159, 498, 654
SapI GCTCTTC 1 cut(s) 668
SaqAI TTAA 4 cut(s) 396, 755, 978, 1087
SatI GCNGC 5 cut(s) 140, 152, 303, 369, 372
Sau3AI GATC 7 cut(s) 187, 241, 336, 750, 862, 922, 1050
Sau96I GGNCC 5 cut(s) 72, 103, 683, 789, 805
SchI GAGTC 1 cut(s) 764
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 3 cut(s) 138, 388, 646
Sfr274I CTCGAG 1 cut(s) 348
SinI GGWCC 3 cut(s) 103, 683, 789
SlaI CTCGAG 1 cut(s) 348
SmiMI CAYNNNNRTG 3 cut(s) 159, 498, 654
SmlI CTYRAG 3 cut(s) 348, 893, 956
SmoI CTYRAG 3 cut(s) 348, 893, 956
Sse9I AATT 5 cut(s) 56, 110, 170, 355, 425
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 8 cut(s) 24, 67, 303, 316, 364, 372, 504, 906
StuI AGGCCT 1 cut(s) 119
StyI CCWWGG 3 cut(s) 417, 450, 456
TaaI ACNGT 2 cut(s) 547, 664
TaiI ACGT 2 cut(s) 225, 1020
TaqI TCGA 7 cut(s) 200, 349, 559, 718, 737, 836, 940
TaqII GACCGA 1 cut(s) 527
TasI AATT 5 cut(s) 56, 110, 170, 355, 425
TauI GCSGC 2 cut(s) 305, 374
TfiI GAWTC 4 cut(s) 35, 41, 293, 869
Tru1I TTAA 4 cut(s) 396, 755, 978, 1087
Tru9I TTAA 4 cut(s) 396, 755, 978, 1087
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 3 cut(s) 139, 151, 368
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 3 cut(s) 425, 566, 999
TspGWI ACGGA 2 cut(s) 171, 1044
TspRI CASTG 1 cut(s) 673
Tth111I GACNNNGTC 1 cut(s) 614
VpaK11BI GGWCC 3 cut(s) 103, 683, 789
XapI RAATTY 2 cut(s) 56, 425
XhoI CTCGAG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 763
ZraI GACGTC 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.