RLG00000019465

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000736
Physical Location & Seq
Reverse (-)
52283182 .. 52284345
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019465

Sequence Viewer

Length: 1164 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCGAAGAAGCCAAAGCTGATGCCGGTGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGCATCTTGCAGGAGCTAATTGATCACCGTCTTGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGTCTGATGTCAGGCTTACCTTCCAAAACGCGTTATGGTATTACCCTCCTGGAGTTAAACAGCGTGCAATGGCCAAGAATCTTGGTCAGGTTTTTGAGGCTAAGTGGAAATTAGGGTTTCCTGAAACTAGATCTTCAACCTTGAAAGCTTCTTGTGCTAGTTTGGATAGGTCTGTGTCTCCCATTAGTCCACTGAGTCCATTAAGTCTTAAACAACTCAACAACAACAAAAGAGAGACCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTGCTGCTTCTGCTATCACTTGTGCAGTGAATAAAGATAAGGAGCACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTCCTTCTGCTATCAATTGTGCAGTGAATAAAAGTAAGGAGCACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTCCTTCTGCTATCAATTGTGCAGTGAATATAAGTAAGGAGCACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTCCTTCTGCGATCAATTGTGCAGTGAATAAAAGTAAGGAGCACCGAATCAAGCGAGGCCTTGACGAAGAGAAGGGTTCTCCTTCTGCTATCAATTGTGCAGTGAATAAAGATAAGGAGCACCGAATCAAGCGGCTAAGGGAACGGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGCTTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAAGTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGCTACAGGGTTTGTCGTTGGTTGACGCTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAAGACGTTGATGAGGATGAATTTCGCATTCGAGATTGGGAAGAAGGTGAAATCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

388

Amino Acids

43.89

Weight (kDa)

9.32

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 114 1.9e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AccII CGCG 4 cut(s) 299, 600, 678, 756
AciI CCGC 5 cut(s) 123, 600, 678, 756, 910
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 2 cut(s) 936, 1124
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 7 cut(s) 405, 412, 950, 967, 995, 1090, 1106
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 4 cut(s) 76, 112, 139, 416
AluI AGCT 4 cut(s) 76, 112, 139, 416
Alw21I GWGCWC 5 cut(s) 588, 666, 744, 822, 900
Alw26I GTCTC 3 cut(s) 234, 450, 497
AlwI GGATC 1 cut(s) 216
AoxI GGCC 6 cut(s) 200, 339, 601, 679, 757, 835
ApeKI GCWGC 2 cut(s) 545, 956
ApoI RAATTY 2 cut(s) 936, 1124
AspLEI GCGC 3 cut(s) 600, 678, 756
AsuHPI GGTGA 4 cut(s) 53, 97, 140, 1163
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 928
BbsI GAAGAC 1 cut(s) 1113
Bbv12I GWGCWC 5 cut(s) 588, 666, 744, 822, 900
BbvI GCAGC 2 cut(s) 532, 943
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 3 cut(s) 234, 450, 497
BfaI CTAG 2 cut(s) 396, 426
BfmI CTRYAG 1 cut(s) 1042
BglII AGATCT 2 cut(s) 398, 988
BisI GCNGC 7 cut(s) 124, 546, 601, 679, 757, 911, 957
BlsI GCNGC 7 cut(s) 125, 547, 602, 680, 758, 912, 958
Bme1390I CCNGG 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 5 cut(s) 69, 135, 250, 1032, 1089
BpiI GAAGAC 1 cut(s) 1113
BpmI CTGGAG 2 cut(s) 235, 339
Bpu10I CCTNAGC 1 cut(s) 914
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 2 cut(s) 986, 1088
BsaI GGTCTC 1 cut(s) 497
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 318
BseGI GGATG 4 cut(s) 40, 515, 1102, 1126
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 200, 452
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 532, 943
BsgI GTGCAG 6 cut(s) 585, 663, 741, 819, 897, 1033
Bsh1236I CGCG 4 cut(s) 299, 600, 678, 756
BshFI GGCC 6 cut(s) 202, 341, 603, 681, 759, 837
BsiHKAI GWGCWC 5 cut(s) 588, 666, 744, 822, 900
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 3 cut(s) 234, 450, 497
BsmI GAATGC 1 cut(s) 1131
BsnI GGCC 6 cut(s) 202, 341, 603, 681, 759, 837
Bso31I GGTCTC 1 cut(s) 497
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 6 cut(s) 588, 666, 744, 822, 900, 928
Bsp143I GATC 5 cut(s) 145, 208, 398, 789, 988
BspACI CCGC 5 cut(s) 123, 600, 678, 756, 910
BspANI GGCC 6 cut(s) 202, 341, 603, 681, 759, 837
BspCNI CTCAG 2 cut(s) 199, 453
BspFNI CGCG 4 cut(s) 299, 600, 678, 756
BspPI GGATC 1 cut(s) 216
BspT104I TTCGAA 2 cut(s) 172, 196
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 5 cut(s) 145, 208, 398, 789, 988
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 152, 220
Bst6I CTCTTC 7 cut(s) 528, 606, 684, 762, 840, 945, 1085
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 2 cut(s) 333, 961
BstDEI CTNAG 4 cut(s) 186, 369, 461, 914
BstF5I GGATG 4 cut(s) 40, 515, 1102, 1126
BstFNI CGCG 4 cut(s) 299, 600, 678, 756
BstHHI GCGC 3 cut(s) 600, 678, 756
BstKTI GATC 5 cut(s) 148, 211, 401, 792, 991
BstMAI GTCTC 3 cut(s) 234, 450, 497
BstMBI GATC 5 cut(s) 145, 208, 398, 789, 988
BstMWI GCNNNNNNNGC 3 cut(s) 422, 551, 1020
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 1042
BstUI CGCG 4 cut(s) 299, 600, 678, 756
BstV1I GCAGC 2 cut(s) 532, 943
BstV2I GAAGAC 1 cut(s) 1113
BstX2I RGATCY 3 cut(s) 208, 398, 988
BstYI RGATCY 3 cut(s) 208, 398, 988
BsuRI GGCC 6 cut(s) 202, 341, 603, 681, 759, 837
BtsCI GGATG 4 cut(s) 40, 515, 1102, 1126
BtsI GCAGTG 6 cut(s) 573, 651, 729, 807, 885, 1021
BtsIMutI CAGTG 7 cut(s) 458, 573, 651, 729, 807, 885, 1021
Cac8I GCNNGC 2 cut(s) 333, 961
CfoI GCGC 3 cut(s) 600, 678, 756
Cfr10I RCCGGY 1 cut(s) 82
CseI GACGC 1 cut(s) 1072
DdeI CTNAG 4 cut(s) 186, 369, 461, 914
DpnI GATC 5 cut(s) 147, 210, 400, 791, 990
DpnII GATC 5 cut(s) 145, 208, 398, 789, 988
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 7 cut(s) 528, 606, 684, 762, 840, 945, 1085
EarI CTCTTC 7 cut(s) 528, 606, 684, 762, 840, 945, 1085
Eco147I AGGCCT 2 cut(s) 202, 837
Eco24I GRGCYC 1 cut(s) 928
Eco31I GGTCTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 928
FaiI YATR 3 cut(s) 206, 304, 731
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 7 cut(s) 124, 546, 601, 679, 757, 911, 957
FokI GGATG 4 cut(s) 47, 502, 1109, 1133
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 7 cut(s) 124, 546, 601, 679, 757, 911, 957
FspBI CTAG 2 cut(s) 396, 426
GlaI GCGC 3 cut(s) 599, 677, 755
GluI GCNGC 7 cut(s) 124, 546, 601, 679, 757, 911, 957
GsuI CTGGAG 2 cut(s) 235, 339
HaeIII GGCC 6 cut(s) 202, 341, 603, 681, 759, 837
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 1072
HhaI GCGC 3 cut(s) 600, 678, 756
Hin6I GCGC 3 cut(s) 598, 676, 754
HinP1I GCGC 3 cut(s) 598, 676, 754
HincII GTYRAC 1 cut(s) 1062
HindII GTYRAC 1 cut(s) 1062
HindIII AAGCTT 2 cut(s) 110, 414
HpaII CCGG 1 cut(s) 83
HphI GGTGA 4 cut(s) 53, 97, 140, 1163
Hpy166II GTNNAC 3 cut(s) 216, 458, 1062
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 5 cut(s) 188, 389, 519, 973, 1136
Hpy8I GTNNAC 3 cut(s) 216, 458, 1062
HpyCH4III ACNGT 2 cut(s) 152, 220
HpyCH4IV ACGT 1 cut(s) 1110
HpyCH4V TGCA 8 cut(s) 133, 335, 566, 644, 722, 800, 878, 1014
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 551, 1020
HpyF3I CTNAG 4 cut(s) 186, 369, 461, 914
HpySE526I ACGT 1 cut(s) 1110
HspAI GCGC 3 cut(s) 598, 676, 754
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 5 cut(s) 145, 208, 398, 789, 988
LmnI GCTCC 7 cut(s) 97, 136, 583, 661, 739, 817, 895
Lsp1109I GCAGC 2 cut(s) 532, 943
LweI GCATC 5 cut(s) 69, 135, 250, 1032, 1089
MaeI CTAG 2 cut(s) 396, 426
MaeII ACGT 1 cut(s) 1110
MaeIII GTNAC 2 cut(s) 41, 85
MalI GATC 5 cut(s) 147, 210, 400, 791, 990
MboI GATC 5 cut(s) 145, 208, 398, 789, 988
MfeI CAATTG 4 cut(s) 637, 715, 793, 871
MflI RGATCY 3 cut(s) 208, 398, 988
MhlI GDGCHC 6 cut(s) 588, 666, 744, 822, 900, 928
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 8 cut(s) 141, 377, 637, 715, 793, 871, 936, 1124
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 3 cut(s) 324, 470, 477
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 4 cut(s) 637, 715, 793, 871
Mva1269I GAATGC 1 cut(s) 1131
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 4 cut(s) 299, 600, 678, 756
MwoI GCNNNNNNNGC 3 cut(s) 422, 551, 1020
NdeII GATC 5 cut(s) 145, 208, 398, 789, 988
NmuCI GTSAC 2 cut(s) 41, 85
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 2 cut(s) 202, 837
PctI GAATGC 1 cut(s) 1131
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 7 cut(s) 125, 547, 602, 680, 758, 912, 958
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PsuI RGATCY 3 cut(s) 208, 398, 988
SaqAI TTAA 3 cut(s) 324, 470, 477
SatI GCNGC 7 cut(s) 124, 546, 601, 679, 757, 911, 957
Sau3AI GATC 5 cut(s) 145, 208, 398, 789, 988
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 6 cut(s) 588, 666, 744, 822, 900, 928
SfaNI GCATC 5 cut(s) 69, 135, 250, 1032, 1089
SfcI CTRYAG 1 cut(s) 1042
SfuI TTCGAA 2 cut(s) 172, 196
SmlI CTYRAG 2 cut(s) 1001, 1067
SmoI CTYRAG 2 cut(s) 1001, 1067
Sse9I AATT 8 cut(s) 141, 377, 637, 715, 793, 871, 936, 1124
SseBI AGGCCT 2 cut(s) 202, 837
SsiI CCGC 5 cut(s) 123, 600, 678, 756, 910
SspMI CTAG 2 cut(s) 396, 426
StuI AGGCCT 2 cut(s) 202, 837
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 152, 220
TaiI ACGT 1 cut(s) 1113
TaqI TCGA 5 cut(s) 62, 172, 196, 972, 1135
TasI AATT 8 cut(s) 141, 377, 637, 715, 793, 871, 936, 1124
TauI GCSGC 5 cut(s) 126, 603, 681, 759, 913
Tru1I TTAA 3 cut(s) 324, 470, 477
Tru9I TTAA 3 cut(s) 324, 470, 477
TscAI CASTG 7 cut(s) 465, 573, 651, 729, 807, 885, 1021
TseFI GTSAC 2 cut(s) 41, 85
TseI GCWGC 2 cut(s) 545, 956
Tsp45I GTSAC 2 cut(s) 41, 85
TspDTI ATGAA 3 cut(s) 45, 1113, 1137
TspGWI ACGGA 1 cut(s) 1148
TspRI CASTG 7 cut(s) 465, 573, 651, 729, 807, 885, 1021
XapI RAATTY 2 cut(s) 936, 1124
XspI CTAG 2 cut(s) 396, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.