pycom12g22640

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000736
Physical Location & Seq
Reverse (-)
23485880 .. 23486347
468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22640.1

Sequence Viewer

Length: 468 bp
ATGCAGCACGGACATGGGAAGCAATTTGCGAAGCGCGTTGATCCTGTGGCGTCGAATTTGCCGGATTATCTCTACGTCATCCGGAAGCCGATTGCTCTGGGTACTATCAAGTCCGACTTGGAGAAGGGTTACTACTCCAGCGCCGATTCCTTTGCCGCTGATGTGAGGCGGGTGTTCTTGAATGCCATGATCTATTACCCTCGAGGGAATTATGTCCGCGCAGCCGCCCAGCATCTCAGTAATCTCTTTAACACAAAGTGGGAAGAAACCATGGCCAAATTCTCAGTTCATCGTCCTCTGCCACCGCCAAAGGCCAAGGGTTTGTCGTCTTCACCGTCCTTCTCACCTGAACCATACATGGCGGTAAGACCGAGACCTGTTCTCCTTCTTCTTCTACTTCTACGGTTATTCACAGTCGAGGGCTTTTTGGGGTTCATTCAATTGCAAACACCGATGGCAAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

156

Amino Acids

17.54

Weight (kDa)

10.04

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 1 - 77 8.9e-15 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 201
AccII CGCG 2 cut(s) 36, 219
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 6 cut(s) 156, 169, 217, 225, 305, 362
AclWI GGATC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 55, 278
AcyI GRCGYC 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 181, 440
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 201
Aor13HI TCCGGA 1 cut(s) 81
AoxI GGCC 2 cut(s) 273, 312
ApeKI GCWGC 2 cut(s) 4, 221
ApoI RAATTY 2 cut(s) 55, 278
AspLEI GCGC 3 cut(s) 36, 143, 221
AsuHPI GGTGA 2 cut(s) 324, 336
AvaI CYCGRG 1 cut(s) 201
BalI TGGCCA 1 cut(s) 275
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 16, 233
BccI CCATC 1 cut(s) 448
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 1 cut(s) 367
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 4 cut(s) 5, 156, 222, 225
BlsI GCNGC 4 cut(s) 6, 157, 223, 226
BmeT110I CYCGRG 1 cut(s) 201
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 270, 315
BsaWI WCCGGW 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
BseAI TCCGGA 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 270, 315
BseGI GGATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 250, 297
BseXI GCAGC 2 cut(s) 16, 233
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 36, 219
BshFI GGCC 2 cut(s) 275, 314
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 2 cut(s) 62, 82
BsmAI GTCTC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 2 cut(s) 275, 314
Bso31I GGTCTC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 2 cut(s) 40, 189
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 6 cut(s) 156, 169, 217, 225, 305, 362
BspANI GGCC 2 cut(s) 275, 314
BspCNI CTCAG 2 cut(s) 249, 296
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 2 cut(s) 36, 219
BspPI GGATC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 270, 315
BssMI GATC 2 cut(s) 40, 189
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 270, 315
Bst4CI ACNGT 3 cut(s) 336, 405, 415
BstACI GRCGYC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 236, 283
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 2 cut(s) 36, 219
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 3 cut(s) 36, 143, 221
BstKTI GATC 2 cut(s) 43, 192
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 2 cut(s) 40, 189
BstUI CGCG 2 cut(s) 36, 219
BstV1I GCAGC 2 cut(s) 16, 233
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 275, 314
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 78
CfoI GCGC 3 cut(s) 36, 143, 221
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 102
CviAII CATG 4 cut(s) 14, 187, 271, 358
CviJI RGCY 5 cut(s) 88, 224, 275, 314, 423
CviKI_1 RGCY 5 cut(s) 88, 224, 275, 314, 423
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 236, 283
DpnI GATC 2 cut(s) 42, 191
DpnII GATC 2 cut(s) 40, 189
DraIII CACNNNGTG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 270, 315
Eco31I GGTCTC 1 cut(s) 367
Eco88I CYCGRG 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 270, 315
ErhI CCWWGG 2 cut(s) 270, 315
FaeI CATG 4 cut(s) 17, 190, 274, 361
FaiI YATR 6 cut(s) 15, 188, 213, 272, 355, 359
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 4 cut(s) 13, 186, 270, 357
FauI CCCGC 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 5, 156, 222, 225
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 4 cut(s) 5, 156, 222, 225
GlaI GCGC 3 cut(s) 35, 142, 220
GluI GCNGC 4 cut(s) 5, 156, 222, 225
GsaI CCCAGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 275, 314
HapII CCGG 2 cut(s) 62, 82
HgaI GACGC 1 cut(s) 39
HhaI GCGC 3 cut(s) 36, 143, 221
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 4 cut(s) 17, 190, 274, 361
Hin6I GCGC 3 cut(s) 34, 141, 219
HinP1I GCGC 3 cut(s) 34, 141, 219
HinfI GANTC 1 cut(s) 146
HpaII CCGG 2 cut(s) 62, 82
HphI GGTGA 2 cut(s) 324, 336
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 82, 178
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 118, 349, 395
HpyCH4III ACNGT 3 cut(s) 336, 405, 415
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 4, 445
HpyF3I CTNAG 2 cut(s) 236, 283
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 4 cut(s) 17, 190, 274, 361
HspAI GCGC 3 cut(s) 34, 141, 219
Kpn2I TCCGGA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 40, 189
LpnPI CCDG 8 cut(s) 57, 75, 83, 95, 151, 242, 360, 390
Lsp1109I GCAGC 2 cut(s) 16, 233
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 42, 191
MboI GATC 2 cut(s) 40, 189
MboII GAAGA 4 cut(s) 275, 321, 380, 383
MfeI CAATTG 1 cut(s) 440
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 5 cut(s) 23, 55, 208, 278, 440
MluNI TGGCCA 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 159, 197, 210, 306, 412
Mox20I TGGCCA 1 cut(s) 275
MroI TCCGGA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 62, 82
MunI CAATTG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 2 cut(s) 36, 219
NcoI CCATGG 1 cut(s) 270
NdeII GATC 2 cut(s) 40, 189
NlaIII CATG 4 cut(s) 17, 190, 274, 361
PaeR7I CTCGAG 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 4 cut(s) 6, 157, 223, 226
PspFI CCCAGC 1 cut(s) 228
PspXI VCTCGAGB 1 cut(s) 201
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 4 cut(s) 5, 156, 222, 225
Sau3AI GATC 2 cut(s) 40, 189
SetI ASST 3 cut(s) 78, 349, 379
SfaNI GCATC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 5 cut(s) 23, 55, 208, 278, 440
SsiI CCGC 6 cut(s) 156, 169, 217, 225, 305, 362
StyI CCWWGG 2 cut(s) 270, 315
TaaI ACNGT 3 cut(s) 336, 405, 415
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 53, 202, 417
TaqII GACCGA 1 cut(s) 385
TasI AATT 5 cut(s) 23, 55, 208, 278, 440
TauI GCSGC 2 cut(s) 158, 227
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 2 cut(s) 4, 221
TspDTI ATGAA 2 cut(s) 278, 424
TspGWI ACGGA 1 cut(s) 24
XapI RAATTY 2 cut(s) 55, 278
XhoI CTCGAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.