Rh2DG457500

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000736
Physical Location & Seq
Forward (+)
66116450 .. 66123251
6802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG457500.1

Sequence Viewer

Length: 867 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGAGATCTTGCAGGAGCTAATTGATCACAGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGCCAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTTATGGTATTACGCTCATGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGTGTGCTAGTTTGGATAGGTCTGTGTCTCCAGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAAAAGAGGAGGAGGGGCCAACAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGGATAAAGATAAGGAACGCCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCATTTACAAGATCTTCAACAACTCAACTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAACATGTTGATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGGTGAAATCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

288

Amino Acids

32.85

Weight (kDa)

8.8

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 58 - 114 8.4e-12 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 534
AciI CCGC 1 cut(s) 534
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 2 cut(s) 636, 827
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 297, 808
AgsI TTSAA 6 cut(s) 407, 650, 667, 695, 790, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AluBI AGCT 5 cut(s) 76, 112, 139, 283, 598
AluI AGCT 5 cut(s) 76, 112, 139, 283, 598
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 216
AoxI GGCC 5 cut(s) 200, 270, 339, 438, 535
ApeKI GCWGC 1 cut(s) 656
ApoI RAATTY 2 cut(s) 636, 827
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 438
AsuHPI GGTGA 2 cut(s) 53, 866
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 1 cut(s) 643
BceAI ACGGC 1 cut(s) 626
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 2 cut(s) 126, 688
BisI GCNGC 2 cut(s) 535, 657
BlsI GCNGC 2 cut(s) 536, 658
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 439
BmsI GCATC 4 cut(s) 69, 250, 732, 789
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 2 cut(s) 235, 369
Bpu10I CCTNAGC 1 cut(s) 614
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 1 cut(s) 788
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 252, 386
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 5 cut(s) 40, 59, 449, 802, 829
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 252, 386
BseRI GAGGAG 2 cut(s) 444, 447
BseXI GCAGC 1 cut(s) 643
BsgI GTGCAG 3 cut(s) 519, 597, 733
Bsh1236I CGCG 2 cut(s) 299, 534
BshFI GGCC 5 cut(s) 202, 272, 341, 440, 537
BsiHKAI GWGCWC 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 387
BsnI GGCC 5 cut(s) 202, 272, 341, 440, 537
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 4 cut(s) 126, 145, 208, 688
BspACI CCGC 1 cut(s) 534
BspANI GGCC 5 cut(s) 202, 272, 341, 440, 537
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 534
BspLI GGNNCC 1 cut(s) 439
BspPI GGATC 1 cut(s) 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 252, 386
BssMI GATC 4 cut(s) 126, 145, 208, 688
Bst4CI ACNGT 2 cut(s) 152, 220
Bst6I CTCTTC 5 cut(s) 462, 540, 645, 785, 813
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 186, 614
BstF5I GGATG 5 cut(s) 40, 59, 449, 802, 829
BstFNI CGCG 2 cut(s) 299, 534
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 4 cut(s) 129, 148, 211, 691
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 4 cut(s) 126, 145, 208, 688
BstMWI GCNNNNNNNGC 2 cut(s) 269, 720
BstNSI RCATGY 1 cut(s) 812
BstUI CGCG 2 cut(s) 299, 534
BstV1I GCAGC 1 cut(s) 643
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 3 cut(s) 126, 208, 688
BstYI RGATCY 3 cut(s) 126, 208, 688
BsuRI GGCC 5 cut(s) 202, 272, 341, 440, 537
BtsCI GGATG 5 cut(s) 40, 59, 449, 802, 829
BtsI GCAGTG 3 cut(s) 507, 585, 721
BtsIMutI CAGTG 4 cut(s) 393, 507, 585, 721
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 438
CviAII CATG 3 cut(s) 155, 317, 809
DdeI CTNAG 2 cut(s) 186, 614
DpnI GATC 4 cut(s) 128, 147, 210, 690
DpnII GATC 4 cut(s) 126, 145, 208, 688
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 5 cut(s) 462, 540, 645, 785, 813
EarI CTCTTC 5 cut(s) 462, 540, 645, 785, 813
Ecl136II GAGCTC 1 cut(s) 598
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 600
Eco53kI GAGCTC 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 600
FaeI CATG 3 cut(s) 158, 320, 812
FaiI YATR 6 cut(s) 156, 206, 304, 318, 591, 810
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 154, 316, 808
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 535, 657
FokI GGATG 5 cut(s) 46, 47, 436, 809, 836
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 2 cut(s) 535, 657
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 533
GluI GCNGC 2 cut(s) 535, 657
GsuI CTGGAG 2 cut(s) 235, 369
HaeIII GGCC 5 cut(s) 202, 272, 341, 440, 537
HhaI GCGC 1 cut(s) 534
Hin1II CATG 3 cut(s) 158, 320, 812
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 2 cut(s) 110, 281
HinfI GANTC 9 cut(s) 11, 174, 182, 346, 391, 525, 603, 676, 734
HphI GGTGA 2 cut(s) 53, 866
Hpy166II GTNNAC 2 cut(s) 216, 762
Hpy188I TCNGA 1 cut(s) 602
Hpy188III TCNNGA 3 cut(s) 188, 453, 673
Hpy8I GTNNAC 2 cut(s) 216, 762
HpyAV CCTTC 6 cut(s) 15, 192, 298, 466, 544, 845
HpyCH4III ACNGT 2 cut(s) 152, 220
HpyCH4V TGCA 5 cut(s) 133, 335, 500, 578, 714
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 720
HpyF3I CTNAG 2 cut(s) 186, 614
Hsp92II CATG 3 cut(s) 158, 320, 812
HspAI GCGC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 688
LmnI GCTCC 4 cut(s) 97, 136, 595, 603
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 4 cut(s) 69, 250, 732, 789
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 41, 740
MalI GATC 4 cut(s) 128, 147, 210, 690
MboI GATC 4 cut(s) 126, 145, 208, 688
MboII GAAGA 8 cut(s) 395, 479, 557, 662, 683, 802, 830, 860
MflI RGATCY 3 cut(s) 126, 208, 688
MhlI GDGCHC 1 cut(s) 600
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 3 cut(s) 141, 636, 827
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 422, 425, 428, 636, 646, 786, 814
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 2 cut(s) 153, 813
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 2 cut(s) 299, 534
MwoI GCNNNNNNNGC 2 cut(s) 269, 720
NdeII GATC 4 cut(s) 126, 145, 208, 688
NlaIII CATG 3 cut(s) 158, 320, 812
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 812
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 808
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 525, 603, 676, 734
PkrI GCNGC 2 cut(s) 536, 658
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PscI ACATGT 1 cut(s) 808
Psp124BI GAGCTC 1 cut(s) 600
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 438
PsuI RGATCY 3 cut(s) 126, 208, 688
RseI CAYNNNNRTG 2 cut(s) 153, 813
SacI GAGCTC 1 cut(s) 600
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 2 cut(s) 535, 657
Sau3AI GATC 4 cut(s) 126, 145, 208, 688
Sau96I GGNCC 1 cut(s) 438
SchI GAGTC 1 cut(s) 400
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 4 cut(s) 69, 250, 732, 789
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 2 cut(s) 153, 813
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 3 cut(s) 141, 636, 827
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 534
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 600
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 2 cut(s) 152, 220
TaqI TCGA 4 cut(s) 172, 196, 661, 672
TasI AATT 3 cut(s) 141, 636, 827
TauI GCSGC 1 cut(s) 537
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 525, 603, 676, 734
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 4 cut(s) 393, 507, 585, 721
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 656
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 45, 813, 831, 840
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 4 cut(s) 393, 507, 585, 721
XapI RAATTY 2 cut(s) 636, 827
XceI RCATGY 1 cut(s) 812
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.