Rh2BG382100

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000736
Physical Location & Seq
Reverse (-)
53967503 .. 53968700
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG382100.1

Sequence Viewer

Length: 1062 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCAGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAGGCTTACCTTCCTAAATTCGTTATGGTATTACCCTCATGGAGATAAACAGCGTGCAATGGCCAAGAATCTTGGTCAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTCTAGTTTGGATAGGTCTGTGTCTCCTATTAGTCCAGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAAAAGAGAGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCACCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAAGTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAAGATGTTGATGATGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGATGGAGAACAGAGTCCACAAACAACTAAATATTACATCCACATATGGTGGCATATCATCATCATCAAGTACATACTGCTACGTAGCAAAATTTATTCTATGTACAAAAATTCATGTAATGGTGACAGAAACTTTTGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

353

Amino Acids

40.98

Weight (kDa)

9.13

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 114 7.1e-10 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 600
AciI CCGC 2 cut(s) 123, 600
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 5 cut(s) 295, 702, 893, 1008, 1027
AfaI GTAC 2 cut(s) 989, 1022
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 8 cut(s) 405, 412, 479, 716, 733, 761, 856, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 4 cut(s) 76, 112, 139, 416
AluI AGCT 4 cut(s) 76, 112, 139, 416
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 2 cut(s) 234, 450
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 5 cut(s) 200, 270, 339, 504, 601
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 5 cut(s) 295, 702, 893, 1008, 1027
AspLEI GCGC 1 cut(s) 600
AsuHPI GGTGA 3 cut(s) 53, 140, 1052
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 393, 467
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 709
BccI CCATC 1 cut(s) 914
BceAI ACGGC 1 cut(s) 692
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 450
BfaI CTAG 2 cut(s) 396, 426
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 754
BisI GCNGC 2 cut(s) 601, 723
BlsI GCNGC 2 cut(s) 602, 724
BmsI GCATC 4 cut(s) 69, 250, 798, 855
BpiI GAAGAC 2 cut(s) 393, 467
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 2 cut(s) 752, 854
BsaAI YACGTR 1 cut(s) 1001
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 2 cut(s) 252, 458
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 6 cut(s) 40, 59, 515, 868, 895, 954
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 252, 458
BseXI GCAGC 1 cut(s) 709
BsgI GTGCAG 3 cut(s) 585, 663, 799
Bsh1236I CGCG 1 cut(s) 600
BshFI GGCC 5 cut(s) 202, 272, 341, 506, 603
BsiHKAI GWGCWC 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 2 cut(s) 234, 450
BsnI GGCC 5 cut(s) 202, 272, 341, 506, 603
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 666
Bsp1407I TGTACA 1 cut(s) 1020
Bsp143I GATC 4 cut(s) 126, 145, 208, 754
BspACI CCGC 2 cut(s) 123, 600
BspANI GGCC 5 cut(s) 202, 272, 341, 506, 603
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 600
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 1020
BsrI ACTGG 2 cut(s) 252, 458
BssMI GATC 4 cut(s) 126, 145, 208, 754
Bst4CI ACNGT 3 cut(s) 152, 220, 384
Bst6I CTCTTC 4 cut(s) 528, 606, 711, 851
BstAUI TGTACA 1 cut(s) 1020
BstBAI YACGTR 1 cut(s) 1001
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 680
BstF5I GGATG 6 cut(s) 40, 59, 515, 868, 895, 954
BstFNI CGCG 1 cut(s) 600
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 4 cut(s) 129, 148, 211, 757
BstMAI GTCTC 2 cut(s) 234, 450
BstMBI GATC 4 cut(s) 126, 145, 208, 754
BstMWI GCNNNNNNNGC 2 cut(s) 269, 786
BstSNI TACGTA 1 cut(s) 1001
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 709
BstV2I GAAGAC 2 cut(s) 393, 467
BstX2I RGATCY 3 cut(s) 126, 208, 754
BstYI RGATCY 3 cut(s) 126, 208, 754
BsuRI GGCC 5 cut(s) 202, 272, 341, 506, 603
BtsCI GGATG 6 cut(s) 40, 59, 515, 868, 895, 954
BtsI GCAGTG 3 cut(s) 573, 651, 787
BtsIMutI CAGTG 4 cut(s) 465, 573, 651, 787
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 600
Csp6I GTAC 2 cut(s) 988, 1021
CviAII CATG 3 cut(s) 155, 317, 1032
CviQI GTAC 2 cut(s) 988, 1021
DdeI CTNAG 3 cut(s) 186, 369, 680
DpnI GATC 4 cut(s) 128, 147, 210, 756
DpnII GATC 4 cut(s) 126, 145, 208, 754
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 4 cut(s) 528, 606, 711, 851
EarI CTCTTC 4 cut(s) 528, 606, 711, 851
Eco105I TACGTA 1 cut(s) 1001
Eco147I AGGCCT 1 cut(s) 202
FaeI CATG 3 cut(s) 158, 320, 1035
FatI CATG 3 cut(s) 154, 316, 1031
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 962
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 601, 723
FokI GGATG 6 cut(s) 46, 47, 502, 875, 902, 941
Fsp4HI GCNGC 2 cut(s) 601, 723
FspBI CTAG 2 cut(s) 396, 426
GlaI GCGC 1 cut(s) 599
GluI GCNGC 2 cut(s) 601, 723
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 506, 603
HhaI GCGC 1 cut(s) 600
Hin1II CATG 3 cut(s) 158, 320, 1035
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 2 cut(s) 110, 414
HphI GGTGA 3 cut(s) 53, 140, 1052
Hpy166II GTNNAC 3 cut(s) 216, 828, 935
Hpy188III TCNNGA 4 cut(s) 188, 389, 519, 739
Hpy8I GTNNAC 3 cut(s) 216, 828, 935
HpyAV CCTTC 5 cut(s) 15, 192, 298, 532, 610
HpyCH4III ACNGT 3 cut(s) 152, 220, 384
HpyCH4IV ACGT 1 cut(s) 1000
HpyCH4V TGCA 6 cut(s) 82, 133, 335, 566, 644, 780
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 786
HpyF3I CTNAG 3 cut(s) 186, 369, 680
HpySE526I ACGT 1 cut(s) 1000
Hsp92II CATG 3 cut(s) 158, 320, 1035
HspAI GCGC 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 754
LmnI GCTCC 3 cut(s) 97, 136, 661
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 4 cut(s) 69, 250, 798, 855
MaeI CTAG 2 cut(s) 396, 426
MaeII ACGT 1 cut(s) 1000
MaeIII GTNAC 3 cut(s) 41, 806, 1040
MalI GATC 4 cut(s) 128, 147, 210, 756
MboI GATC 4 cut(s) 126, 145, 208, 754
MflI RGATCY 3 cut(s) 126, 208, 754
MhlI GDGCHC 1 cut(s) 666
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 7 cut(s) 141, 295, 377, 702, 893, 1008, 1027
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 2 cut(s) 472, 940
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 2 cut(s) 269, 786
NdeI CATATG 1 cut(s) 962
NdeII GATC 4 cut(s) 126, 145, 208, 754
NlaIII CATG 3 cut(s) 158, 320, 1035
NmuCI GTSAC 2 cut(s) 41, 1040
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 591, 669, 742, 800
PkrI GCNGC 2 cut(s) 602, 724
PleI GAGTC 2 cut(s) 471, 939
PpsI GAGTC 2 cut(s) 471, 939
Ppu21I YACGTR 1 cut(s) 1001
PsuI RGATCY 3 cut(s) 126, 208, 754
RsaI GTAC 2 cut(s) 989, 1022
RsaNI GTAC 2 cut(s) 988, 1021
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 2 cut(s) 601, 723
Sau3AI GATC 4 cut(s) 126, 145, 208, 754
SchI GAGTC 2 cut(s) 472, 940
SduI GDGCHC 1 cut(s) 666
SfaNI GCATC 4 cut(s) 69, 250, 798, 855
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 767, 833
SmoI CTYRAG 2 cut(s) 767, 833
SnaBI TACGTA 1 cut(s) 1001
Sse9I AATT 7 cut(s) 141, 295, 377, 702, 893, 1008, 1027
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 123, 600
SspI AATATT 1 cut(s) 950
SspMI CTAG 2 cut(s) 396, 426
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 3 cut(s) 152, 220, 384
TaiI ACGT 1 cut(s) 1003
TaqI TCGA 4 cut(s) 172, 196, 727, 738
TasI AATT 7 cut(s) 141, 295, 377, 702, 893, 1008, 1027
TatI WGTACW 2 cut(s) 987, 1020
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 591, 669, 742, 800
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 4 cut(s) 465, 573, 651, 787
TseFI GTSAC 2 cut(s) 41, 1040
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 2 cut(s) 41, 1040
TspDTI ATGAA 4 cut(s) 45, 879, 906, 1020
TspRI CASTG 4 cut(s) 465, 573, 651, 787
XapI RAATTY 5 cut(s) 295, 702, 893, 1008, 1027
XspI CTAG 2 cut(s) 396, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.