Rh2BG447500

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000736
Physical Location & Seq
Forward (+)
63197981 .. 63204782
6802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG447500.1

Sequence Viewer

Length: 717 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGAGATCTTGCAGGAGCTAATTGATCACAGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGCCAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTTATGGTATTACGCTCATGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGTGGATAAAGATAAGGAACGCCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCATTTACAAGATCTTCAACAACTCAACTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAACATGTTGATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGGTGAAATCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

238

Amino Acids

27.73

Weight (kDa)

8.43

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 57 - 114 5.9e-12 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 384
AciI CCGC 1 cut(s) 384
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 2 cut(s) 486, 677
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 297, 658
AgsI TTSAA 5 cut(s) 500, 517, 545, 640, 656
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AluBI AGCT 5 cut(s) 76, 112, 139, 283, 448
AluI AGCT 5 cut(s) 76, 112, 139, 283, 448
Alw21I GWGCWC 1 cut(s) 450
AlwI GGATC 1 cut(s) 216
AoxI GGCC 4 cut(s) 200, 270, 339, 385
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 486, 677
AspLEI GCGC 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 53, 716
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 493
BceAI ACGGC 1 cut(s) 476
BclI TGATCA 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 2 cut(s) 126, 538
BisI GCNGC 2 cut(s) 385, 507
BlsI GCNGC 2 cut(s) 386, 508
BmsI GCATC 4 cut(s) 69, 250, 582, 639
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 464
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 1 cut(s) 638
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 4 cut(s) 40, 59, 652, 679
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 493
BsgI GTGCAG 2 cut(s) 447, 583
Bsh1236I CGCG 2 cut(s) 299, 384
BshFI GGCC 4 cut(s) 202, 272, 341, 387
BsiHKAI GWGCWC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 89
BsnI GGCC 4 cut(s) 202, 272, 341, 387
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 4 cut(s) 126, 145, 208, 538
BspACI CCGC 1 cut(s) 384
BspANI GGCC 4 cut(s) 202, 272, 341, 387
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 384
BspPI GGATC 1 cut(s) 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 1 cut(s) 252
BssMI GATC 4 cut(s) 126, 145, 208, 538
Bst4CI ACNGT 2 cut(s) 152, 220
Bst6I CTCTTC 4 cut(s) 390, 495, 635, 663
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 186, 464
BstF5I GGATG 4 cut(s) 40, 59, 652, 679
BstFNI CGCG 2 cut(s) 299, 384
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 4 cut(s) 129, 148, 211, 541
BstMBI GATC 4 cut(s) 126, 145, 208, 538
BstMWI GCNNNNNNNGC 2 cut(s) 269, 570
BstNSI RCATGY 1 cut(s) 662
BstUI CGCG 2 cut(s) 299, 384
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 3 cut(s) 126, 208, 538
BstYI RGATCY 3 cut(s) 126, 208, 538
BsuRI GGCC 4 cut(s) 202, 272, 341, 387
BtsCI GGATG 4 cut(s) 40, 59, 652, 679
BtsI GCAGTG 2 cut(s) 435, 571
BtsIMutI CAGTG 2 cut(s) 435, 571
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 384
CviAII CATG 3 cut(s) 155, 317, 659
DdeI CTNAG 2 cut(s) 186, 464
DpnI GATC 4 cut(s) 128, 147, 210, 540
DpnII GATC 4 cut(s) 126, 145, 208, 538
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 4 cut(s) 390, 495, 635, 663
EarI CTCTTC 4 cut(s) 390, 495, 635, 663
Ecl136II GAGCTC 1 cut(s) 448
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 450
FaeI CATG 3 cut(s) 158, 320, 662
FaiI YATR 6 cut(s) 156, 206, 304, 318, 441, 660
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 154, 316, 658
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 385, 507
FokI GGATG 4 cut(s) 46, 47, 659, 686
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 385, 507
GlaI GCGC 1 cut(s) 383
GluI GCNGC 2 cut(s) 385, 507
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 4 cut(s) 202, 272, 341, 387
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 158, 320, 662
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 2 cut(s) 110, 281
HinfI GANTC 8 cut(s) 11, 174, 182, 346, 375, 453, 526, 584
HphI GGTGA 2 cut(s) 53, 716
Hpy166II GTNNAC 2 cut(s) 216, 612
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 2 cut(s) 188, 523
Hpy8I GTNNAC 2 cut(s) 216, 612
HpyAV CCTTC 5 cut(s) 15, 192, 298, 394, 695
HpyCH4III ACNGT 2 cut(s) 152, 220
HpyCH4V TGCA 4 cut(s) 133, 335, 428, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 570
HpyF3I CTNAG 2 cut(s) 186, 464
Hsp92II CATG 3 cut(s) 158, 320, 662
HspAI GCGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 538
LmnI GCTCC 4 cut(s) 97, 136, 445, 453
LpnPI CCDG 8 cut(s) 75, 119, 173, 192, 265, 458, 566, 580
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 4 cut(s) 69, 250, 582, 639
MaeIII GTNAC 2 cut(s) 41, 590
MalI GATC 4 cut(s) 128, 147, 210, 540
MboI GATC 4 cut(s) 126, 145, 208, 538
MboII GAAGA 6 cut(s) 407, 512, 533, 652, 680, 710
MflI RGATCY 3 cut(s) 126, 208, 538
MhlI GDGCHC 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 3 cut(s) 141, 486, 677
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 6 cut(s) 25, 184, 486, 496, 636, 664
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MslI CAYNNNNRTG 2 cut(s) 153, 663
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 2 cut(s) 299, 384
MwoI GCNNNNNNNGC 2 cut(s) 269, 570
NdeII GATC 4 cut(s) 126, 145, 208, 538
NlaIII CATG 3 cut(s) 158, 320, 662
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 662
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 658
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 375, 453, 526, 584
PkrI GCNGC 2 cut(s) 386, 508
PscI ACATGT 1 cut(s) 658
Psp124BI GAGCTC 1 cut(s) 450
PsuI RGATCY 3 cut(s) 126, 208, 538
RseI CAYNNNNRTG 2 cut(s) 153, 663
SacI GAGCTC 1 cut(s) 450
SatI GCNGC 2 cut(s) 385, 507
Sau3AI GATC 4 cut(s) 126, 145, 208, 538
SduI GDGCHC 1 cut(s) 450
SetI ASST 9 cut(s) 78, 94, 114, 141, 195, 285, 290, 450, 706
SfaNI GCATC 4 cut(s) 69, 250, 582, 639
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 2 cut(s) 153, 663
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 3 cut(s) 141, 486, 677
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 384
SstI GAGCTC 1 cut(s) 450
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 2 cut(s) 152, 220
TaqI TCGA 4 cut(s) 172, 196, 511, 522
TasI AATT 3 cut(s) 141, 486, 677
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 375, 453, 526, 584
TscAI CASTG 2 cut(s) 435, 571
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 45, 663, 681, 690
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 2 cut(s) 435, 571
XapI RAATTY 2 cut(s) 486, 677
XceI RCATGY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.