Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004897.1

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Forward (+)

16073 .. 16653

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004897.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgggctgcgattctaaaagaaggcgtagagaggatgtgggtgacacaacgattccatcatccaagaagcaaaaggagctaattgatcaccgtcatggctctgtggctgttcgaatccctgattctcaggaggttcgaaggcctatggatctgtccaccgtcaaatccaagttggagagagacaactactgcagtattgatgcctttgtggccgatgtcaagcttaccttccaaaacgcgttatggtattactctcttggagaaaaacagcatgcaatggccaagaatcttggtaaggtttttgaggctaagtggaaattacggtttcctgaaactaggtcttcaaccttgaaagcttcttgtgctagtttggataggtctgtgtctcttattagtccagtgagtccattaggtcttcaacaactcaacaacaacaacaacaacaaaagaggggccaagaggtcatccagaaaccttgacgaagagaagggttctgcttctcttcgtcaaggccgcgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

173

Amino Acids

19.51

Weight (kDa)

9.97

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	239, 516
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	210, 279
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	345, 352, 419
AluBI	AGCT	3 cut(s)	79, 223, 356
AluI	AGCT	3 cut(s)	79, 223, 356
Alw26I	GTCTC	2 cut(s)	174, 390
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	5 cut(s)	140, 210, 279, 453, 511
ApeKI	GCWGC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	53, 80
AsuII	TTCGAA	2 cut(s)	112, 136
BalI	TGGCCA	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	333, 407
BccI	CCATC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	174, 390
BfaI	CTAG	2 cut(s)	336, 366
BfmI	CTRYAG	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	7, 514
BlsI	GCNGC	2 cut(s)	8, 515
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	454
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	2 cut(s)	333, 407
Bpu14I	TTCGAA	2 cut(s)	112, 136
Bse1I	ACTGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	282
BseGI	GGATG	3 cut(s)	40, 59, 464
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	398
Bsh1236I	CGCG	2 cut(s)	239, 516
BshFI	GGCC	5 cut(s)	142, 212, 281, 455, 513
BsmAI	GTCTC	2 cut(s)	174, 390
BsnI	GGCC	5 cut(s)	142, 212, 281, 455, 513
Bsp119I	TTCGAA	2 cut(s)	112, 136
Bsp143I	GATC	2 cut(s)	85, 148
BspACI	CCGC	1 cut(s)	514
BspANI	GGCC	5 cut(s)	142, 212, 281, 455, 513
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	2 cut(s)	239, 516
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	1 cut(s)	194
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	2 cut(s)	112, 136
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	2 cut(s)	85, 148
Bst4CI	ACNGT	3 cut(s)	92, 160, 324
Bst6I	CTCTTC	2 cut(s)	477, 507
BstBI	TTCGAA	2 cut(s)	112, 136
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	126, 309
BstF5I	GGATG	3 cut(s)	40, 59, 464
BstFNI	CGCG	2 cut(s)	239, 516
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	2 cut(s)	88, 151
BstMAI	GTCTC	2 cut(s)	174, 390
BstMBI	GATC	2 cut(s)	85, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 209, 362
BstNSI	RCATGY	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	2 cut(s)	239, 516
BstV2I	GAAGAC	2 cut(s)	333, 407
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	5 cut(s)	142, 212, 281, 455, 513
BtsCI	GGATG	3 cut(s)	40, 59, 464
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	453
CviAII	CATG	2 cut(s)	95, 272
DdeI	CTNAG	2 cut(s)	126, 309
DpnI	GATC	2 cut(s)	87, 150
DpnII	GATC	2 cut(s)	85, 148
EaeI	YGGCCR	2 cut(s)	210, 279
Eam1104I	CTCTTC	2 cut(s)	477, 507
EarI	CTCTTC	2 cut(s)	477, 507
Eco147I	AGGCCT	1 cut(s)	142
FaeI	CATG	2 cut(s)	98, 275
FaiI	YATR	4 cut(s)	96, 146, 244, 273
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	2 cut(s)	94, 271
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	7, 514
FokI	GGATG	3 cut(s)	46, 47, 451
Fsp4HI	GCNGC	2 cut(s)	7, 514
FspBI	CTAG	2 cut(s)	336, 366
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	2 cut(s)	7, 514
HaeIII	GGCC	5 cut(s)	142, 212, 281, 455, 513
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	2 cut(s)	98, 275
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	221, 354
HinfI	GANTC	6 cut(s)	11, 52, 114, 122, 286, 403
HphI	GGTGA	2 cut(s)	53, 80
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188III	TCNNGA	3 cut(s)	128, 329, 468
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	4 cut(s)	15, 132, 238, 481
HpyCH4III	ACNGT	3 cut(s)	92, 160, 324
HpyCH4V	TGCA	2 cut(s)	192, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 209, 362
HpyF3I	CTNAG	2 cut(s)	126, 309
Hsp92II	CATG	2 cut(s)	98, 275
HspAI	GCGC	1 cut(s)	516
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	85, 148
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	113, 132, 342, 411, 481
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	336, 366
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	87, 150
MboI	GATC	2 cut(s)	85, 148
MboII	GAAGA	4 cut(s)	333, 407, 494, 494
MflI	RGATCY	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	2 cut(s)	81, 317
MluI	ACGCGT	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	25, 124, 298, 443, 453
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	281
MvnI	CGCG	2 cut(s)	239, 516
MwoI	GCNNNNNNNGC	3 cut(s)	76, 209, 362
NdeII	GATC	2 cut(s)	85, 148
NlaIII	CATG	2 cut(s)	98, 275
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	275
NspV	TTCGAA	2 cut(s)	112, 136
PaeI	GCATGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	142
PfeI	GAWTC	5 cut(s)	11, 52, 114, 122, 286
PkrI	GCNGC	2 cut(s)	8, 515
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	2 cut(s)	7, 514
Sau3AI	GATC	2 cut(s)	85, 148
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	190
SfuI	TTCGAA	2 cut(s)	112, 136
SmiMI	CAYNNNNRTG	1 cut(s)	93
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	81, 317
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	2 cut(s)	336, 366
StuI	AGGCCT	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	92, 160, 324
TaqI	TCGA	2 cut(s)	112, 136
TasI	AATT	2 cut(s)	81, 317
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	5 cut(s)	11, 52, 114, 122, 286
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	41
TspRI	CASTG	1 cut(s)	405
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	2 cut(s)	336, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.