Rorug02G0254000

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000736
Physical Location & Seq
Forward (+)
26642242 .. 26647522
5281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0254000.1

Sequence Viewer

Length: 1245 bp
ATGGACCCACCTTCTTCTCTTCAACCCCCCCATCTCTCCGCCGCCGCCGACGACGACCACCATGAAAACTCAATCCCCGCCGTCGATCATAATAAGAAGAAGGGGAAGAAAAAGCTATTCAAGGACGGCGCTTCGGTCGCGTCCTCCTCCTCCTCTTCTGCTTCCACTTCTTCGGGCTTCTCTGTAAGAGGAGCCGCGCGTGTGACGGGCAAGCGCCGAGGGCAGAAGGTGGTTGTCAATGCGGTGCGGCGGAGCCCTAATTCCGATGATATAGGGTTTCGGTTGGGGATGTCAATGGCGGTGTTTGTTAATCAGATTCTGGAAAGGAATGGTGAGCTAGGTGGAGGGATGTCTTCTGATCATCTTGCTAAGATATGTGCTTCAGCTGTCAGAGGATCATTTGCTAATAAACAGGATTTCGGGAACACGTTTGATTGTTTTATCCAGAACTTTGAACAATCATTTGGGAGCACCTTAAGAACTCTAAAGTCGATCAAAGAATCATCCGAAGATAACACAGGATATCTCTCCAGCAAGCAAAACATAGAAGAACATAGTCCGCGTGTCACTCATGACGAACAAGATGACTGTCTAAGGGGGGAAGCTTGTAGAAGCAGTTCCAGTACAGAAGATTATCACTCAAAAGAAGTGACCCACACTACTGCAACTGAGGGTCAATTAAATTATAGAGATCAATTACATCAGAATATGCTGACAAACCCTGTTAACCTGGAGGTTGCCCTGCATGGCCAAATCAATCAATTGACTTGTATTCCCCCGAGGGTGACCAACCAATCCATGTTTAATACTTTTGAGAAATCTGTCATGGAGCAAACTCGTGCTAATGAGCTGAAGATTTGGGAGCTTGGTCTGGCAATGAAGAAGTTGTCGTTGAAAGAGGAACAAGTGGCTCTAGGTCATGATTCAAATCATCTGGAGAGATCAAAAATAGCTATGGGCAGATCAAAGGCATCCTTCAAAGCTGAAAAATTTAAGACTCAATTAGAAGACACAAGACACTCTGAGCTCCTTAGGACGTGCATTGACTGTCTAGTTGCTGGATTATTGGTCATGGCTGCAGCCCTGTCTTATGGTACTTACATATATTCATACAGAAGAATTATGGAAGCCACTGCATCATGTACACCTTCAAAGTACTTGGACATCTGTGAAGAAGCTATAAGAGCATCTCCAACCCATGCTGTTATTTTGCTGTGCCATGTGGCATTCTGTGCCTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

414

Amino Acids

45.56

Weight (kDa)

7.62

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 140, 197, 199, 562
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 1 cut(s) 989
AcuI CTGAAG 2 cut(s) 366, 872
AfaI GTAC 4 cut(s) 625, 1096, 1144, 1157
AflII CTTAAG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 7 cut(s) 23, 121, 455, 895, 927, 979, 1152
AjiI CACGTC 1 cut(s) 1038
AjnI CCWGG 1 cut(s) 729
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
Alw21I GWGCWC 2 cut(s) 473, 1029
AlwI GGATC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 1 cut(s) 748
ApeKI GCWGC 2 cut(s) 1076, 1079
ApoI RAATTY 1 cut(s) 989
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 3 cut(s) 131, 199, 216
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 344, 796
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 1031
BalI TGGCCA 1 cut(s) 750
BanII GRGCYC 2 cut(s) 257, 1029
BauI CACGAG 1 cut(s) 837
BbsI GAAGAC 2 cut(s) 345, 1014
Bbv12I GWGCWC 2 cut(s) 473, 1029
BbvI GCAGC 2 cut(s) 1063, 1091
BccI CCATC 1 cut(s) 39
BceAI ACGGC 2 cut(s) 65, 142
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 1 cut(s) 358
BfaI CTAG 3 cut(s) 338, 914, 1052
BfmI CTRYAG 1 cut(s) 1077
BfoI RGCGCY 2 cut(s) 132, 217
BfrI CTTAAG 1 cut(s) 475
BisI GCNGC 6 cut(s) 42, 45, 195, 248, 1077, 1080
BlsI GCNGC 6 cut(s) 43, 46, 196, 249, 1078, 1081
BmcAI AGTACT 1 cut(s) 1157
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 778
BmgBI CACGTC 1 cut(s) 1038
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 193, 254
BmrFI CCNGG 1 cut(s) 731
BmsI GCATC 3 cut(s) 980, 1145, 1196
BpiI GAAGAC 2 cut(s) 345, 1014
BpmI CTGGAG 3 cut(s) 514, 752, 956
BsaBI GATNNNNATC 1 cut(s) 927
BsaJI CCNNGG 2 cut(s) 217, 779
Bse1I ACTGG 1 cut(s) 621
Bse21I CCTNAGG 1 cut(s) 1031
Bse3DI GCAATG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 217, 779
BseGI GGATG 4 cut(s) 294, 354, 503, 971
BseJI GATNNNNATC 1 cut(s) 927
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 2 cut(s) 660, 1014
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 4 cut(s) 136, 139, 142, 204
BseXI GCAGC 2 cut(s) 1063, 1091
Bsh1236I CGCG 4 cut(s) 140, 197, 199, 562
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 473, 1029
BsiHKCI CYCGRG 1 cut(s) 778
BsmI GAATGC 1 cut(s) 1226
BsnI GGCC 1 cut(s) 750
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 3 cut(s) 257, 473, 1029
Bsp1407I TGTACA 1 cut(s) 1142
Bsp143I GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
BspANI GGCC 1 cut(s) 750
BspCNI CTCAG 2 cut(s) 661, 1015
BspFNI CGCG 4 cut(s) 140, 197, 199, 562
BspHI TCATGA 2 cut(s) 571, 919
BspLI GGNNCC 3 cut(s) 6, 193, 254
BspMAI CTGCAG 1 cut(s) 1081
BspPI GGATC 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 882
BsrGI TGTACA 1 cut(s) 1142
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 2 cut(s) 217, 779
BssMI GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
BssSI CACGAG 1 cut(s) 837
Bst2BI CACGAG 1 cut(s) 837
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 2 cut(s) 590, 1049
Bst6I CTCTTC 2 cut(s) 24, 160
BstAFI CTTAAG 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstAUI TGTACA 1 cut(s) 1142
BstC8I GCNNGC 2 cut(s) 212, 536
BstDEI CTNAG 5 cut(s) 369, 593, 669, 1023, 1031
BstEII GGTNACC 1 cut(s) 784
BstF5I GGATG 4 cut(s) 294, 354, 503, 971
BstFNI CGCG 4 cut(s) 140, 197, 199, 562
BstH2I RGCGCY 2 cut(s) 132, 217
BstHHI GCGC 3 cut(s) 131, 199, 216
BstKTI GATC 7 cut(s) 88, 361, 398, 495, 694, 944, 965
BstMBI GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 4 cut(s) 137, 220, 1184, 1232
BstNI CCWGG 1 cut(s) 731
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 1 cut(s) 729
BstSFI CTRYAG 1 cut(s) 1077
BstUI CGCG 4 cut(s) 140, 197, 199, 562
BstV1I GCAGC 2 cut(s) 1063, 1091
BstV2I GAAGAC 2 cut(s) 345, 1014
Bsu36I CCTNAGG 1 cut(s) 1031
BsuRI GGCC 1 cut(s) 750
BtrI CACGTC 1 cut(s) 1038
BtsCI GGATG 4 cut(s) 294, 354, 503, 971
BtsI GCAGTG 1 cut(s) 1131
BtsIMutI CAGTG 1 cut(s) 1131
Cac8I GCNNGC 2 cut(s) 212, 536
CaiI CAGNNNCTG 1 cut(s) 319
CciI TCATGA 2 cut(s) 571, 919
CfoI GCGC 3 cut(s) 131, 199, 216
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 129
Csp6I GTAC 4 cut(s) 624, 1095, 1143, 1156
CviQI GTAC 4 cut(s) 624, 1095, 1143, 1156
DdeI CTNAG 5 cut(s) 369, 593, 669, 1023, 1031
DpnI GATC 7 cut(s) 87, 360, 397, 494, 693, 943, 964
DpnII GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 2 cut(s) 24, 160
EarI CTCTTC 2 cut(s) 24, 160
EciI GGCGGA 2 cut(s) 28, 265
Ecl136II GAGCTC 1 cut(s) 1027
Eco24I GRGCYC 2 cut(s) 257, 1029
Eco32I GATATC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 1027
Eco57I CTGAAG 2 cut(s) 366, 872
Eco81I CCTNAGG 1 cut(s) 1031
Eco88I CYCGRG 1 cut(s) 778
Eco91I GGTNACC 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 1027
EcoO65I GGTNACC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 729
EcoRV GATATC 1 cut(s) 524
EcoT38I GRGCYC 2 cut(s) 257, 1029
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FauI CCCGC 1 cut(s) 85
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 6 cut(s) 42, 45, 195, 248, 1077, 1080
FokI GGATG 4 cut(s) 301, 361, 490, 958
FriOI GRGCYC 2 cut(s) 257, 1029
Fsp4HI GCNGC 6 cut(s) 42, 45, 195, 248, 1077, 1080
FspBI CTAG 3 cut(s) 338, 914, 1052
GlaI GCGC 3 cut(s) 130, 198, 215
GluI GCNGC 6 cut(s) 42, 45, 195, 248, 1077, 1080
GsuI CTGGAG 3 cut(s) 514, 752, 956
HaeII RGCGCY 2 cut(s) 132, 217
HaeIII GGCC 1 cut(s) 750
HgaI GACGC 1 cut(s) 129
HhaI GCGC 3 cut(s) 131, 199, 216
Hin6I GCGC 3 cut(s) 129, 197, 214
HinP1I GCGC 3 cut(s) 129, 197, 214
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 4 cut(s) 316, 500, 923, 997
HpaI GTTAAC 1 cut(s) 727
HphI GGTGA 2 cut(s) 344, 796
Hpy166II GTNNAC 2 cut(s) 727, 1145
Hpy188I TCNGA 7 cut(s) 265, 315, 358, 392, 508, 705, 1024
Hpy188III TCNNGA 6 cut(s) 320, 421, 445, 572, 920, 935
Hpy8I GTNNAC 2 cut(s) 727, 1145
Hpy99I CGWCG 3 cut(s) 53, 56, 86
HpyAV CCTTC 5 cut(s) 21, 94, 220, 985, 1158
HpyCH4III ACNGT 2 cut(s) 590, 1049
HpyCH4IV ACGT 2 cut(s) 428, 1037
HpyCH4V TGCA 5 cut(s) 665, 745, 1041, 1079, 1136
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 220, 1184, 1232
HpyF3I CTNAG 5 cut(s) 369, 593, 669, 1023, 1031
HpySE526I ACGT 2 cut(s) 428, 1037
HspAI GCGC 3 cut(s) 129, 197, 214
Ksp22I TGATCA 1 cut(s) 358
KspAI GTTAAC 1 cut(s) 727
Kzo9I GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
LmnI GCTCC 6 cut(s) 191, 252, 468, 829, 862, 1032
Lsp1109I GCAGC 2 cut(s) 1063, 1091
LweI GCATC 3 cut(s) 980, 1145, 1196
MaeI CTAG 3 cut(s) 338, 914, 1052
MaeII ACGT 2 cut(s) 428, 1037
MaeIII GTNAC 4 cut(s) 202, 565, 649, 784
MalI GATC 7 cut(s) 87, 360, 397, 494, 693, 943, 964
MboI GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
MfeI CAATTG 2 cut(s) 761, 1240
MhlI GDGCHC 3 cut(s) 257, 473, 1029
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 9 cut(s) 259, 677, 682, 695, 761, 989, 1001, 1119, 1240
MluNI TGGCCA 1 cut(s) 750
MlyI GAGTC 1 cut(s) 991
MmeI TCCRAC 1 cut(s) 1217
Mox20I TGGCCA 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 1 cut(s) 750
MseI TTAA 6 cut(s) 309, 476, 680, 726, 804, 993
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 731
MunI CAATTG 2 cut(s) 761, 1240
Mva1269I GAATGC 1 cut(s) 1226
MvaI CCWGG 1 cut(s) 731
MvnI CGCG 4 cut(s) 140, 197, 199, 562
MwoI GCNNNNNNNGC 4 cut(s) 137, 220, 1184, 1232
NdeII GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
NlaIV GGNNCC 3 cut(s) 6, 193, 254
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 4 cut(s) 202, 565, 649, 784
PagI TCATGA 2 cut(s) 571, 919
PctI GAATGC 1 cut(s) 1226
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 3 cut(s) 316, 500, 923
PkrI GCNGC 6 cut(s) 43, 46, 196, 249, 1078, 1081
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
Psp124BI GAGCTC 1 cut(s) 1029
Psp6I CCWGG 1 cut(s) 729
PspEI GGTNACC 1 cut(s) 784
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 6, 193, 254
PspPI GGNCC 1 cut(s) 4
PsrI GAACNNNNNNTAC 2 cut(s) 601, 633
PstI CTGCAG 1 cut(s) 1081
PstNI CAGNNNCTG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 4 cut(s) 625, 1096, 1144, 1157
RsaNI GTAC 4 cut(s) 624, 1095, 1143, 1156
SacI GAGCTC 1 cut(s) 1029
SaqAI TTAA 6 cut(s) 309, 476, 680, 726, 804, 993
SatI GCNGC 6 cut(s) 42, 45, 195, 248, 1077, 1080
Sau3AI GATC 7 cut(s) 85, 358, 395, 492, 691, 941, 962
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 1157
SchI GAGTC 1 cut(s) 991
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 3 cut(s) 257, 473, 1029
SfaNI GCATC 3 cut(s) 980, 1145, 1196
SfcI CTRYAG 1 cut(s) 1077
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 9 cut(s) 259, 677, 682, 695, 761, 989, 1001, 1119, 1240
SspMI CTAG 3 cut(s) 338, 914, 1052
SstI GAGCTC 1 cut(s) 1029
StyD4I CCNGG 1 cut(s) 729
TaaI ACNGT 2 cut(s) 590, 1049
TaiI ACGT 2 cut(s) 431, 1040
TaqI TCGA 2 cut(s) 84, 491
TaqII GACCGA 1 cut(s) 124
TasI AATT 9 cut(s) 259, 677, 682, 695, 761, 989, 1001, 1119, 1240
TatI WGTACW 3 cut(s) 623, 1142, 1155
TauI GCSGC 4 cut(s) 44, 47, 197, 250
TfiI GAWTC 3 cut(s) 316, 500, 923
Tru1I TTAA 6 cut(s) 309, 476, 680, 726, 804, 993
Tru9I TTAA 6 cut(s) 309, 476, 680, 726, 804, 993
TscAI CASTG 1 cut(s) 1138
TseFI GTSAC 4 cut(s) 202, 565, 649, 784
TseI GCWGC 2 cut(s) 1076, 1079
Tsp45I GTSAC 4 cut(s) 202, 565, 649, 784
TspDTI ATGAA 3 cut(s) 78, 893, 1098
TspRI CASTG 1 cut(s) 1138
Vha464I CTTAAG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 989
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 3 cut(s) 338, 914, 1052
ZrmI AGTACT 1 cut(s) 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.