Rh2DG398400

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000736
Physical Location & Seq
Reverse (-)
57919179 .. 57921591
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG398400.1

Sequence Viewer

Length: 1065 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGTTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTTATGGTATTACGCTCATGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTGTGCTAGTTTGGATAGGTCTGTGTCTCCTTTTAGTCCAGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGGATAAAGATAAGGAACGCCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTTTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTGAACAACTCAAGTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAAGATGTTGATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGATGGAGAACAGAGTCCACAAACAACTAAATATTACATCCACATATGGTGGCATATCATCATCATCAAGTACATACTGCTACGTAGCAAAATTTATTCTATGTACAAAAATTCATGTAATGGTGACAGAAACTTTTGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

354

Amino Acids

41.06

Weight (kDa)

9.2

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 114 2.6e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 603
AciI CCGC 2 cut(s) 123, 603
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 4 cut(s) 705, 896, 1011, 1030
AfaI GTAC 2 cut(s) 992, 1025
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 8 cut(s) 405, 412, 482, 719, 736, 764, 859, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AluBI AGCT 6 cut(s) 76, 112, 139, 283, 416, 667
AluI AGCT 6 cut(s) 76, 112, 139, 283, 416, 667
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 2 cut(s) 234, 453
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 5 cut(s) 200, 270, 339, 507, 604
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 4 cut(s) 705, 896, 1011, 1030
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 3 cut(s) 53, 140, 1055
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 669
BbsI GAAGAC 2 cut(s) 393, 470
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 712
BccI CCATC 1 cut(s) 917
BceAI ACGGC 1 cut(s) 695
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 453
BfaI CTAG 2 cut(s) 396, 429
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 757
BisI GCNGC 2 cut(s) 604, 726
BlsI GCNGC 2 cut(s) 605, 727
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 1 cut(s) 508
BmsI GCATC 4 cut(s) 69, 250, 801, 858
BpiI GAAGAC 2 cut(s) 393, 470
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 683
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 2 cut(s) 755, 857
BsaAI YACGTR 1 cut(s) 1004
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 252, 461
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 6 cut(s) 40, 59, 518, 871, 898, 957
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 252, 461
BseXI GCAGC 1 cut(s) 712
BsgI GTGCAG 3 cut(s) 588, 666, 802
Bsh1236I CGCG 2 cut(s) 299, 603
BshFI GGCC 5 cut(s) 202, 272, 341, 509, 606
BsiHKAI GWGCWC 1 cut(s) 669
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 234, 453
BsnI GGCC 5 cut(s) 202, 272, 341, 509, 606
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 669
Bsp1407I TGTACA 1 cut(s) 1023
Bsp143I GATC 4 cut(s) 126, 145, 208, 757
BspACI CCGC 2 cut(s) 123, 603
BspANI GGCC 5 cut(s) 202, 272, 341, 509, 606
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 603
BspLI GGNNCC 1 cut(s) 508
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 1023
BsrI ACTGG 2 cut(s) 252, 461
BssMI GATC 4 cut(s) 126, 145, 208, 757
Bst4CI ACNGT 3 cut(s) 152, 220, 384
Bst6I CTCTTC 5 cut(s) 531, 609, 714, 854, 882
BstAUI TGTACA 1 cut(s) 1023
BstBAI YACGTR 1 cut(s) 1004
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 683
BstF5I GGATG 6 cut(s) 40, 59, 518, 871, 898, 957
BstFNI CGCG 2 cut(s) 299, 603
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 4 cut(s) 129, 148, 211, 760
BstMAI GTCTC 2 cut(s) 234, 453
BstMBI GATC 4 cut(s) 126, 145, 208, 757
BstMWI GCNNNNNNNGC 2 cut(s) 269, 789
BstSNI TACGTA 1 cut(s) 1004
BstUI CGCG 2 cut(s) 299, 603
BstV1I GCAGC 1 cut(s) 712
BstV2I GAAGAC 2 cut(s) 393, 470
BstX2I RGATCY 3 cut(s) 126, 208, 757
BstYI RGATCY 3 cut(s) 126, 208, 757
BsuRI GGCC 5 cut(s) 202, 272, 341, 509, 606
BtsCI GGATG 6 cut(s) 40, 59, 518, 871, 898, 957
BtsI GCAGTG 3 cut(s) 576, 654, 790
BtsIMutI CAGTG 4 cut(s) 468, 576, 654, 790
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 2 cut(s) 991, 1024
CviAII CATG 3 cut(s) 155, 317, 1035
CviQI GTAC 2 cut(s) 991, 1024
DdeI CTNAG 3 cut(s) 186, 369, 683
DpnI GATC 4 cut(s) 128, 147, 210, 759
DpnII GATC 4 cut(s) 126, 145, 208, 757
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 5 cut(s) 531, 609, 714, 854, 882
EarI CTCTTC 5 cut(s) 531, 609, 714, 854, 882
Ecl136II GAGCTC 1 cut(s) 667
Eco105I TACGTA 1 cut(s) 1004
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 669
FaeI CATG 3 cut(s) 158, 320, 1038
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 154, 316, 1034
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 965
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 604, 726
FokI GGATG 6 cut(s) 46, 47, 505, 878, 905, 944
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 2 cut(s) 604, 726
FspBI CTAG 2 cut(s) 396, 429
GlaI GCGC 1 cut(s) 602
GluI GCNGC 2 cut(s) 604, 726
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 509, 606
HhaI GCGC 1 cut(s) 603
Hin1II CATG 3 cut(s) 158, 320, 1038
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HindIII AAGCTT 3 cut(s) 110, 281, 414
HphI GGTGA 3 cut(s) 53, 140, 1055
Hpy166II GTNNAC 3 cut(s) 216, 831, 938
Hpy188I TCNGA 1 cut(s) 671
Hpy188III TCNNGA 5 cut(s) 188, 389, 522, 742, 761
Hpy8I GTNNAC 3 cut(s) 216, 831, 938
HpyAV CCTTC 5 cut(s) 15, 192, 298, 535, 613
HpyCH4III ACNGT 3 cut(s) 152, 220, 384
HpyCH4IV ACGT 1 cut(s) 1003
HpyCH4V TGCA 5 cut(s) 133, 335, 569, 647, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 789
HpyF3I CTNAG 3 cut(s) 186, 369, 683
HpySE526I ACGT 1 cut(s) 1003
Hsp92II CATG 3 cut(s) 158, 320, 1038
HspAI GCGC 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 757
LmnI GCTCC 4 cut(s) 97, 136, 664, 672
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 4 cut(s) 69, 250, 801, 858
MaeI CTAG 2 cut(s) 396, 429
MaeII ACGT 1 cut(s) 1003
MaeIII GTNAC 3 cut(s) 41, 809, 1043
MalI GATC 4 cut(s) 128, 147, 210, 759
MboI GATC 4 cut(s) 126, 145, 208, 757
MflI RGATCY 3 cut(s) 126, 208, 757
MhlI GDGCHC 1 cut(s) 669
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 6 cut(s) 141, 377, 705, 896, 1011, 1030
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 2 cut(s) 475, 943
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 358, 497, 507, 705, 715, 855, 883
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 2 cut(s) 299, 603
MwoI GCNNNNNNNGC 2 cut(s) 269, 789
NdeI CATATG 1 cut(s) 965
NdeII GATC 4 cut(s) 126, 145, 208, 757
NlaIII CATG 3 cut(s) 158, 320, 1038
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 2 cut(s) 41, 1043
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 594, 672, 745, 803
PkrI GCNGC 2 cut(s) 605, 727
PleI GAGTC 2 cut(s) 474, 942
PpsI GAGTC 2 cut(s) 474, 942
Ppu21I YACGTR 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 1 cut(s) 507
PsuI RGATCY 3 cut(s) 126, 208, 757
RsaI GTAC 2 cut(s) 992, 1025
RsaNI GTAC 2 cut(s) 991, 1024
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 604, 726
Sau3AI GATC 4 cut(s) 126, 145, 208, 757
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 2 cut(s) 475, 943
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 4 cut(s) 69, 250, 801, 858
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 770, 836
SmoI CTYRAG 2 cut(s) 770, 836
SnaBI TACGTA 1 cut(s) 1004
Sse9I AATT 6 cut(s) 141, 377, 705, 896, 1011, 1030
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 123, 603
SspI AATATT 1 cut(s) 953
SspMI CTAG 2 cut(s) 396, 429
SstI GAGCTC 1 cut(s) 669
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 3 cut(s) 152, 220, 384
TaiI ACGT 1 cut(s) 1006
TaqI TCGA 4 cut(s) 172, 196, 730, 741
TasI AATT 6 cut(s) 141, 377, 705, 896, 1011, 1030
TatI WGTACW 2 cut(s) 990, 1023
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 594, 672, 745, 803
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 4 cut(s) 468, 576, 654, 790
TseFI GTSAC 2 cut(s) 41, 1043
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 2 cut(s) 41, 1043
TspDTI ATGAA 5 cut(s) 45, 882, 900, 909, 1023
TspRI CASTG 4 cut(s) 468, 576, 654, 790
XapI RAATTY 4 cut(s) 705, 896, 1011, 1030
XspI CTAG 2 cut(s) 396, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.