Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

34714626 .. 34715009

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1255100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTGAGGTTTCCGAAGGAGGCGAAAACTTTAGGGTTTAGGCAACTAATAAGTCTTGCTAGAGCATTGCTGCGAAGATCAAAGATTCTTGTTCTTGATGAAGCAACTGCTGCTGTCGACGTTGGGACTGATGCTCTTATCCAGAAAACCATTCGCGAAGAGTTCAAATCGTGCACCATGCTCGTTATTGCTCACAGATTAAATACCATAACTGACTGTGATCGAATTCTGGTTCTGGATGCCGGTCAGGTATGTGCCCTCACTTTAATGCAAGCAGGAATCCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

97

Amino Acids

10.61

Weight (kDa)

9.02

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	176
Alw44I	GTGCAC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	70, 110
ApoI	RAATTY	1 cut(s)	225
BaeGI	GKGCMC	2 cut(s)	176, 259
Bbv12I	GWGCWC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	57, 97
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	71, 111
BlsI	GCNGC	2 cut(s)	72, 112
BmsI	GCATC	2 cut(s)	121, 229
Bpu10I	CCTNAGC	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	176, 259
BseXI	GCAGC	2 cut(s)	57, 97
Bsh1236I	CGCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	176, 259
Bsp143I	GATC	2 cut(s)	77, 220
Bsp68I	TCGCGA	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	2 cut(s)	77, 220
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	80, 223
BstMBI	GATC	2 cut(s)	77, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSLI	GKGCMC	2 cut(s)	176, 259
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	57, 97
BtsCI	GGATG	1 cut(s)	244
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	242
CviAII	CATG	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	2 cut(s)	79, 222
DpnII	GATC	2 cut(s)	77, 220
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	225
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	179, 209, 253, 289
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	71, 111
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	71, 111
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	2 cut(s)	71, 111
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	85, 279
HpaII	CCGG	1 cut(s)	243
Hpy166II	GTNNAC	2 cut(s)	118, 174
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	4 cut(s)	95, 142, 155, 236
Hpy8I	GTNNAC	2 cut(s)	118, 174
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	174, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	5
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	77, 220
LpnPI	CCDG	6 cut(s)	155, 215, 221, 233, 256, 261
Lsp1109I	GCAGC	2 cut(s)	57, 97
LweI	GCATC	2 cut(s)	121, 229
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	120
MalI	GATC	2 cut(s)	79, 222
MboI	GATC	2 cut(s)	77, 220
MboII	GAAGA	2 cut(s)	87, 170
MhlI	GDGCHC	2 cut(s)	176, 259
MluCI	AATT	1 cut(s)	225
MnlI	CCTC	2 cut(s)	13, 269
MseI	TTAA	2 cut(s)	200, 266
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	77, 220
NlaIII	CATG	1 cut(s)	181
NruI	TCGCGA	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	85, 279
PkrI	GCNGC	2 cut(s)	72, 112
RruI	TCGCGA	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	200, 266
SatI	GCNGC	2 cut(s)	71, 111
Sau3AI	GATC	2 cut(s)	77, 220
SduI	GDGCHC	2 cut(s)	176, 259
SetI	ASST	3 cut(s)	11, 123, 252
SfaNI	GCATC	2 cut(s)	121, 229
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	117, 223
TasI	AATT	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	85, 279
Tru1I	TTAA	2 cut(s)	200, 266
Tru9I	TTAA	2 cut(s)	200, 266
TseI	GCWGC	2 cut(s)	70, 110
TspDTI	ATGAA	1 cut(s)	114
VneI	GTGCAC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.