Rmu_sc0037710.1_g000001

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037710.1
Physical Location & Seq
Forward (+)
1 .. 644
644 bp
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UTR
Exon/CDS
Intron
Rmu_sc0037710.1_g000001.1.cds

Sequence Viewer

Length: 320 bp
aaggaacagtgagaggaaacctcgacccactggagcaatactctgacagtgatgtctgggaggctctagataaatgtcagctaggtgatctagtgcgtgcaaaggaagagaagttggaagcatcagtggtcgaaaatggagaaaattggagtgcgggccaaagacagttagtttgccttggaagagcattgctcaagaaaagcagaattctggtattggatgaagcaaccgcatcagttgattctgcaactgatggggtgatccagaagatcatcagccaagaattcaaagatcgaactgtcgttacaatagctcacaga

Protein Analysis

106

Amino Acids

11.7

Weight (kDa)

4.97

Isoelectric Point (pI)

14.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AciI CCGC 2 cut(s) 154, 230
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 2 cut(s) 206, 283
AgsI TTSAA 1 cut(s) 288
AluBI AGCT 2 cut(s) 81, 313
AluI AGCT 2 cut(s) 81, 313
AlwI GGATC 1 cut(s) 255
AoxI GGCC 1 cut(s) 156
ApoI RAATTY 2 cut(s) 206, 283
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 97, 270
BccI CCATC 1 cut(s) 247
BfaI CTAG 3 cut(s) 67, 82, 91
BmgT120I GGNCC 1 cut(s) 156
BmsI GCATC 2 cut(s) 130, 241
BplI GAGNNNNNCTC 5 cut(s) 37, 25, 57, 176, 208
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 158
BsnI GGCC 1 cut(s) 158
Bsp143I GATC 4 cut(s) 87, 260, 269, 291
BspACI CCGC 2 cut(s) 154, 230
BspANI GGCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 4 cut(s) 87, 260, 269, 291
BssT1I CCWWGG 1 cut(s) 177
Bst4CI ACNGT 4 cut(s) 9, 49, 167, 300
Bst6I CTCTTC 2 cut(s) 101, 177
BstC8I GCNNGC 2 cut(s) 98, 156
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 4 cut(s) 90, 263, 272, 294
BstMBI GATC 4 cut(s) 87, 260, 269, 291
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 4 cut(s) 14, 28, 54, 131
Cac8I GCNNGC 2 cut(s) 98, 156
Cfr13I GGNCC 1 cut(s) 156
CviJI RGCY 5 cut(s) 64, 81, 158, 278, 313
CviKI_1 RGCY 5 cut(s) 64, 81, 158, 278, 313
DpnI GATC 4 cut(s) 89, 262, 271, 293
DpnII GATC 4 cut(s) 87, 260, 269, 291
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 101, 177
EarI CTCTTC 2 cut(s) 101, 177
Eco130I CCWWGG 1 cut(s) 177
EcoRI GAATTC 2 cut(s) 206, 283
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FauI CCCGC 1 cut(s) 147
FokI GGATG 1 cut(s) 232
FspBI CTAG 3 cut(s) 67, 82, 91
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 1 cut(s) 158
HinfI GANTC 1 cut(s) 241
HphI GGTGA 2 cut(s) 97, 270
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 67, 195, 264
HpyCH4III ACNGT 4 cut(s) 9, 49, 167, 300
HpyCH4V TGCA 2 cut(s) 100, 247
Kzo9I GATC 4 cut(s) 87, 260, 269, 291
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 16, 42, 196, 277
LweI GCATC 2 cut(s) 130, 241
MaeI CTAG 3 cut(s) 67, 82, 91
MaeIII GTNAC 1 cut(s) 303
MalI GATC 4 cut(s) 89, 262, 271, 293
MboI GATC 4 cut(s) 87, 260, 269, 291
MboII GAAGA 3 cut(s) 118, 194, 279
MluCI AATT 3 cut(s) 144, 206, 283
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 7, 31, 54
NdeII GATC 4 cut(s) 87, 260, 269, 291
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 156
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
SapI GCTCTTC 1 cut(s) 177
Sau3AI GATC 4 cut(s) 87, 260, 269, 291
Sau96I GGNCC 1 cut(s) 156
SetI ASST 4 cut(s) 23, 83, 87, 315
SfaNI GCATC 2 cut(s) 130, 241
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 3 cut(s) 144, 206, 283
SsiI CCGC 2 cut(s) 154, 230
SspMI CTAG 3 cut(s) 67, 82, 91
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 4 cut(s) 9, 49, 167, 300
TaqI TCGA 3 cut(s) 23, 131, 294
TasI AATT 3 cut(s) 144, 206, 283
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 4 cut(s) 14, 35, 54, 131
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 4 cut(s) 14, 35, 54, 131
XapI RAATTY 2 cut(s) 206, 283
XbaI TCTAGA 1 cut(s) 66
XspI CTAG 3 cut(s) 67, 82, 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.