Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

22580737 .. 22581372

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAATGACAAGAAGTGGATAGACCGGTCTCAAACAGGGCCTGGAATTGTGGCCTCTGCTATGGCATGGTTTGAGGAGTATTCCCGGGCAAATTGGGAGTCTGAGGCCATGGATCGAAGTAGACCTATAAGTCGGAAATTGTGGACGTACTGCACCATGGATGATGTCCTTAAACTGAATGTTAATGGGGCTTTTCTTCCTTCGATTCAGTATGGGGGTACATGTGGAGTTATTAGGAATGCTCAAGGCCATTTCATTGCTGCATTTTCCTACAGGTCAGACTTTGCCATTAACTCTTTGGCTGAAGACTTGTCTGATTTGGGAGCTTTGATATCAGATATCAGAGACCTTATGGCTACAGTAGGGGAAGTTACAATTTGCTTTGCTTCTAGGCAAGCAAACATGGTTGCACATCGCTTAGCTAGTCATAGTTGTGATTCGAACATTCACCTCGAATGGTTTACTAATGCTCCAGAGATTATATTGGATGCCTCATGTACGATCATAATCGTATCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

173

Amino Acids

19.19

Weight (kDa)

5.1

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	149, 220, 499
AflIII	ACRYGT	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	326, 422
AluI	AGCT	2 cut(s)	326, 422
Alw26I	GTCTC	2 cut(s)	33, 339
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	4 cut(s)	38, 51, 105, 247
ApeKI	GCWGC	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AsiGI	ACCGGT	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	2 cut(s)	85, 86
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	85, 86
BcoDI	GTCTC	2 cut(s)	33, 339
BfaI	CTAG	3 cut(s)	390, 423, 516
BfmI	CTRYAG	2 cut(s)	271, 357
BisI	GCNGC	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	42, 85, 86
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	42, 85, 86
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	85, 86
BsaBI	GATNNNNATC	1 cut(s)	506
BsaI	GGTCTC	2 cut(s)	33, 339
BsaJI	CCNNGG	3 cut(s)	84, 108, 156
BsaWI	WCCGGW	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bse118I	RCCGGY	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	84, 108, 156
BseGI	GGATG	2 cut(s)	166, 493
BseJI	GATNNNNATC	1 cut(s)	506
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	136
BshFI	GGCC	4 cut(s)	40, 53, 107, 249
BshTI	ACCGGT	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	25, 85
BsmAI	GTCTC	2 cut(s)	33, 339
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	4 cut(s)	40, 53, 107, 249
Bso31I	GGTCTC	2 cut(s)	33, 339
BsoBI	CYCGRG	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	112, 501
Bsp1720I	GCTNAGC	1 cut(s)	418
Bsp19I	CCATGG	2 cut(s)	108, 156
BspANI	GGCC	4 cut(s)	40, 53, 107, 249
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	440
BspTNI	GGTCTC	2 cut(s)	33, 339
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	84, 108, 156
BssMI	GATC	2 cut(s)	112, 501
BssT1I	CCWWGG	2 cut(s)	108, 156
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	102, 418
BstDSI	CCRYGG	2 cut(s)	108, 156
BstF5I	GGATG	2 cut(s)	166, 493
BstKTI	GATC	2 cut(s)	115, 504
BstMAI	GTCTC	2 cut(s)	33, 339
BstMBI	GATC	2 cut(s)	112, 501
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	40, 83, 84
BstSFI	CTRYAG	2 cut(s)	271, 357
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	4 cut(s)	40, 53, 107, 249
BtgI	CCRYGG	2 cut(s)	108, 156
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	166, 493
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	38
Cfr9I	CCCGGG	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	148, 219, 498
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	6 cut(s)	66, 109, 157, 222, 403, 495
CviJI	RGCY	9 cut(s)	40, 53, 107, 191, 249, 302, 326, 356, 422
CviKI_1	RGCY	9 cut(s)	40, 53, 107, 191, 249, 302, 326, 356, 422
CviQI	GTAC	3 cut(s)	148, 219, 498
DdeI	CTNAG	2 cut(s)	102, 418
DpnI	GATC	2 cut(s)	114, 503
DpnII	GATC	2 cut(s)	112, 501
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
Eco130I	CCWWGG	2 cut(s)	108, 156
Eco31I	GGTCTC	2 cut(s)	33, 339
Eco32I	GATATC	2 cut(s)	333, 340
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	40
EcoRV	GATATC	2 cut(s)	333, 340
EcoT14I	CCWWGG	2 cut(s)	108, 156
ErhI	CCWWGG	2 cut(s)	108, 156
FaeI	CATG	6 cut(s)	69, 112, 160, 225, 406, 498
FatI	CATG	6 cut(s)	65, 108, 156, 221, 402, 494
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	173, 500
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	3 cut(s)	390, 423, 516
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	4 cut(s)	40, 53, 107, 249
HapII	CCGG	2 cut(s)	25, 85
Hin1II	CATG	6 cut(s)	69, 112, 160, 225, 406, 498
HinfI	GANTC	3 cut(s)	98, 205, 437
HpaII	CCGG	2 cut(s)	25, 85
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	122, 144, 462
Hpy188I	TCNGA	6 cut(s)	103, 135, 280, 316, 337, 344
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	3 cut(s)	122, 144, 462
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	153, 263, 410
HpyF3I	CTNAG	2 cut(s)	102, 418
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	6 cut(s)	69, 112, 160, 225, 406, 498
Kzo9I	GATC	2 cut(s)	112, 501
LmnI	GCTCC	2 cut(s)	323, 475
LpnPI	CCDG	7 cut(s)	21, 27, 38, 54, 98, 259, 486
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	3 cut(s)	390, 423, 516
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	2 cut(s)	114, 503
MboI	GATC	2 cut(s)	112, 501
MboII	GAAGA	2 cut(s)	188, 317
MluCI	AATT	4 cut(s)	45, 91, 137, 375
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	64, 67, 97, 461, 502
MseI	TTAA	4 cut(s)	171, 183, 291, 520
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	2 cut(s)	25, 85
MspR9I	CCNGG	3 cut(s)	42, 85, 86
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	42
NciI	CCSGG	2 cut(s)	85, 86
NcoI	CCATGG	2 cut(s)	108, 156
NdeII	GATC	2 cut(s)	112, 501
NlaIII	CATG	6 cut(s)	69, 112, 160, 225, 406, 498
NspI	RCATGY	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	440
PciI	ACATGT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	205, 437
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	3 cut(s)	149, 220, 499
RsaNI	GTAC	3 cut(s)	148, 219, 498
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	171, 183, 291, 520
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	112, 501
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	42, 85, 86
SetI	ASST	7 cut(s)	127, 149, 278, 328, 351, 424, 453
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	2 cut(s)	271, 357
SfuI	TTCGAA	1 cut(s)	440
SmaI	CCCGGG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	45, 91, 137, 375
SspMI	CTAG	3 cut(s)	390, 423, 516
StyD4I	CCNGG	3 cut(s)	40, 83, 84
StyI	CCWWGG	2 cut(s)	108, 156
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	4 cut(s)	115, 203, 440, 453
TasI	AATT	4 cut(s)	45, 91, 137, 375
TfiI	GAWTC	2 cut(s)	205, 437
Tru1I	TTAA	4 cut(s)	171, 183, 291, 520
Tru9I	TTAA	4 cut(s)	171, 183, 291, 520
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	17, 244
TspMI	CCCGGG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	3 cut(s)	390, 423, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.