Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

19956415 .. 19957181

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTTGAAGGGACTGTAAGAAGCAATCTGGACCCGCTTGAAGAGTACACAGACGAACAAATTTGGGAGGCCCTCGAAAAGTGCCAACTTGGAGATGAAGTTAGGAAAAAGGAAGGAAAGCTAGATTCCACAGTTAACGAGAATGGAGAGAACTGGAGTATGGGTCAGAGACAGCTGGTCTGCCTTGGCCGTGTGCTCTTGAAGAAAAGTAAGGTTTTGGTGCTTGATGAAGCTACTGCATCGGTTGATACAGCTACAGATAATCTGATCGATCAGACCCTTCGACAACACTTTACTGACTGCACAGTCATTACTATTGCACATCGTATAACTTCTGTTCTTGACAGTGACATGGTTCTACTTCTAAGTCATGGGCTTATTGAGGAATATGATTCTCCAGCAAGATTGCTGGAAAACAAATCATCATCCTTCGCTCAGCTCGTGGCAGAGTACACAATGAGGTCGAATTCCAGTTACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

161

Amino Acids

18.07

Weight (kDa)

4.65

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	5 - 80	1.5e-09	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AciI	CCGC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	60, 466
AfaI	GTAC	2 cut(s)	47, 452
AgsI	TTSAA	3 cut(s)	8, 41, 202
AhdI	GACNNNNNGTC	1 cut(s)	176
AluBI	AGCT	5 cut(s)	121, 175, 233, 254, 439
AluI	AGCT	5 cut(s)	121, 175, 233, 254, 439
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	2 cut(s)	69, 187
ApoI	RAATTY	2 cut(s)	60, 466
AspS9I	GGNCC	2 cut(s)	31, 70
AvaII	GGWCC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	255
BlpI	GCTNAGC	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	31, 70
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	248
BpmI	CTGGAG	2 cut(s)	175, 381
Bpu1102I	GCTNAGC	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 148, 178
Bse1I	ACTGG	2 cut(s)	158, 471
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	158, 471
BsgI	GTGCAG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	71, 189
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	71, 189
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	267, 271
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	71, 189
BspCNI	CTCAG	1 cut(s)	448
BspDI	ATCGAT	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	158, 471
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	267, 271
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	440
Bst4CI	ACNGT	4 cut(s)	16, 133, 307, 347
Bst6I	CTCTTC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	365, 435
BstF5I	GGATG	1 cut(s)	425
BstKTI	GATC	2 cut(s)	270, 274
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	267, 271
BstSFI	CTRYAG	1 cut(s)	255
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	71, 189
BsuTUI	ATCGAT	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	425
BtsIMutI	CAGTG	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	31, 70
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	46, 451
CviAII	CATG	2 cut(s)	352, 371
CviJI	RGCY	8 cut(s)	71, 121, 175, 189, 233, 254, 376, 439
CviKI_1	RGCY	8 cut(s)	71, 121, 175, 189, 233, 254, 376, 439
CviQI	GTAC	2 cut(s)	46, 451
DdeI	CTNAG	2 cut(s)	365, 435
DpnI	GATC	2 cut(s)	269, 273
DpnII	GATC	2 cut(s)	267, 271
DrdI	GACNNNNNNGTC	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	36
Eam1105I	GACNNNNNGTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	355, 374
FaiI	YATR	5 cut(s)	161, 329, 353, 372, 390
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	351, 370
FauI	CCCGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	412
FspBI	CTAG	1 cut(s)	122
GsuI	CTGGAG	2 cut(s)	175, 381
HaeIII	GGCC	2 cut(s)	71, 189
Hin1II	CATG	2 cut(s)	355, 374
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	125, 392
HpaI	GTTAAC	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	48, 136, 453
Hpy188I	TCNGA	3 cut(s)	168, 267, 276
Hpy188III	TCNNGA	3 cut(s)	29, 199, 341
Hpy8I	GTNNAC	3 cut(s)	48, 136, 453
HpyAV	CCTTC	3 cut(s)	107, 290, 439
HpyCH4III	ACNGT	4 cut(s)	16, 133, 307, 347
HpyCH4V	TGCA	3 cut(s)	239, 303, 320
HpyF3I	CTNAG	2 cut(s)	365, 435
Hsp92II	CATG	2 cut(s)	355, 374
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	267, 271
LpnPI	CCDG	5 cut(s)	14, 139, 161, 395, 411
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	2 cut(s)	347, 473
MalI	GATC	2 cut(s)	269, 273
MboI	GATC	2 cut(s)	267, 271
MboII	GAAGA	2 cut(s)	53, 214
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	2 cut(s)	60, 466
MnlI	CCTC	4 cut(s)	61, 83, 376, 453
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	175
NdeII	GATC	2 cut(s)	267, 271
NlaIII	CATG	2 cut(s)	355, 374
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	125, 392
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	31, 70
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	47, 452
RsaNI	GTAC	2 cut(s)	46, 451
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	267, 271
Sau96I	GGNCC	2 cut(s)	31, 70
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	7 cut(s)	123, 177, 216, 235, 256, 441, 464
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	60, 466
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	4 cut(s)	16, 133, 307, 347
TaqI	TCGA	4 cut(s)	75, 270, 283, 464
TasI	AATT	2 cut(s)	60, 466
TatI	WGTACW	2 cut(s)	45, 450
TfiI	GAWTC	2 cut(s)	125, 392
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	111, 243
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	60, 466
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.