Rmu_sc0003314.1_g000032

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003314.1
OG0000900
Physical Location & Seq
Forward (+)
135330 .. 135905
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003314.1_g000032.1.cds

Sequence Viewer

Length: 384 bp
atgtgtgaaaaggttcttgagaaatgtcagctacgagaggtcattggagaggaagaagggggcctagattctttagtcgtgcaagatggaacaaactggagcatgggacagcgacaactattctgcttggggcgtgctttattgaagaaaagccgaatactagtgcttgatgaagccacagcatcaatggacaatgcaacagactctattctccagaaaactataagaacagaatttgcagactgcactgtaataacagtggctcataggatacccacagtgatggactgcactaaggtgctcgctcttagtgatggtaaagtagtagagtatgatgagccaatgaagctgatcagttacttcagaacttttggttggctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

5.01

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 346
AgsI TTSAA 1 cut(s) 145
AhlI ACTAGT 1 cut(s) 160
AjuI GAANNNNNNNTTGG 1 cut(s) 358
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 2 cut(s) 31, 349
AluI AGCT 2 cut(s) 31, 349
Alw21I GWGCWC 1 cut(s) 303
AoxI GGCC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 303
BccI CCATC 3 cut(s) 80, 277, 308
BciVI GTATCC 1 cut(s) 264
BclI TGATCA 1 cut(s) 351
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 2 cut(s) 65, 161
BfuI GTATCC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 62
BmsI GCATC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 118, 197
BpuEI CTTGAG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 101
BsgI GTGCAG 2 cut(s) 229, 274
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 303
BslFI GGGAC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 351
BspANI GGCC 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 101
BssMI GATC 1 cut(s) 351
Bst4CI ACNGT 3 cut(s) 250, 259, 280
BstC8I GCNNGC 2 cut(s) 135, 303
BstDEI CTNAG 2 cut(s) 294, 308
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 283
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 246, 264, 285
Cac8I GCNNGC 2 cut(s) 135, 303
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 31, 63, 153, 176, 263, 340, 349, 379
CviKI_1 RGCY 8 cut(s) 31, 63, 153, 176, 263, 340, 349, 379
DdeI CTNAG 2 cut(s) 294, 308
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 61
FaeI CATG 1 cut(s) 106
FaiI YATR 4 cut(s) 104, 224, 267, 333
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 351
FspBI CTAG 2 cut(s) 65, 161
GsuI CTGGAG 2 cut(s) 118, 197
HaeIII GGCC 1 cut(s) 63
Hin1II CATG 1 cut(s) 106
HinfI GANTC 2 cut(s) 68, 203
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 2 cut(s) 17, 214
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 3 cut(s) 250, 259, 280
HpyCH4V TGCA 5 cut(s) 82, 197, 239, 246, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 2 cut(s) 294, 308
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 2 cut(s) 82, 227
LweI GCATC 1 cut(s) 191
MaeI CTAG 2 cut(s) 65, 161
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 2 cut(s) 65, 157
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 1 cut(s) 233
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 2 cut(s) 31, 43
MroXI GAANNNNTTC 1 cut(s) 12
MslI CAYNNNNRTG 2 cut(s) 281, 296
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 1 cut(s) 351
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 68
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 61
RseI CAYNNNNRTG 2 cut(s) 281, 296
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 303
SetI ASST 5 cut(s) 15, 33, 42, 300, 351
SfaNI GCATC 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 281, 296
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 65, 161
TaaI ACNGT 3 cut(s) 250, 259, 280
TasI AATT 1 cut(s) 233
TfiI GAWTC 1 cut(s) 68
TscAI CASTG 3 cut(s) 253, 264, 285
TspDTI ATGAA 2 cut(s) 186, 359
TspRI CASTG 3 cut(s) 253, 264, 285
XapI RAATTY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 65, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.