Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

48141746 .. 48143331

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAATGAAATTGATGACTTTTCTCGAGTAGCCTTTCATAACAATGCAACAATGGAATGGCTATCTGTGAGAATAAATTTTCTGTTCAATCTTGCCTTCCTTGTAGTTCTTATTGTCTTGGTGAACCAGCCTAAGTCTGCCATTGACCCTACTTTGGCAGGAGTGGCTGCATCATATGGTCTAAACGTTACTGTCCTGCAGGCTTGGGTGATTTGGAATCTATGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAATTCTTCAATTCACTGGAATAGAAAGTGAGGCACCACTTGTGATCGAAGCTTCTAGGCAAAACTCCGAATGGCCAACTGAAGGACAAATTGAATTTCAAAACGTGCAAGTTCAATATCAGCCTGAGGGTCCAATGGTACTGAAAGGGATCACTTGCACATTCTCTAAAAAAGAGAAAATTGGAGTGGTGGGAAGAACAGGAAGTGGAAAGTCCACTATGATCCAAGCCTTGTTTAGAGTTGTTGAGCTCTCAGGAGGGAAAATTCTTATTGATGAACAAGACATTTCTAATATAGGCCTGCAGGATTTAAGGTCAAGTTTAGGCATAATCCCGCAAGACCCAACTTTATTTCAAGGAAGCTTGAGGAATAATCTGGATCCTCTGCAGCAACATTCTGATCCAGAAATATTGGAGGTTGTGAAGAAATGTCGACTTGGAAACTTAGTGAGGCAAGACCAAATGCTCCTGGATGCACCTGTTTCTGAAGATGGGGAAAACTGGAGCGTCGGACAGAGGCAGCTTATTTCTCTAGCCAGAGTGCTTCTGAAGAAGAGGAAAATTCTAGTGCTAGATGAGGCTACTGCATCTATAGATACAGGAACAGATAATGCAATTCAGGAGACAATAAGAAAAGAGACAAGTGAATGCACAGTTATCACCGTGGCTCACCGGATTCCTACTGTTATGGACAGTGACATGGTTCTAGTTCTTGATGAAGGTAGGATTGTGGAGTATGATTCTCCTGCTCGACTAATGAAGGATAACTCTTCCGCATTTTCAAAGTTGGTTGCGGAATTCTTGAGGAGATCTTCCAGGAGAAAGAACAACTGCTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

365

Amino Acids

40.68

Weight (kDa)

5.26

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	133 - 281	7.7e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	688
AciI	CCGC	3 cut(s)	590, 1029, 1049
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	5 cut(s)	413, 472, 629, 642, 650
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	6 cut(s)	76, 258, 350, 519, 816, 1052
AcuI	CTGAAG	3 cut(s)	357, 762, 824
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	154, 338
AgsI	TTSAA	8 cut(s)	88, 233, 266, 350, 356, 371, 611, 1038
AjnI	CCWGG	2 cut(s)	723, 1070
AluBI	AGCT	4 cut(s)	308, 505, 618, 778
AluI	AGCT	4 cut(s)	308, 505, 618, 778
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	872, 887
AlwI	GGATC	5 cut(s)	413, 472, 629, 642, 650
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	2 cut(s)	329, 553
ApeKI	GCWGC	3 cut(s)	167, 643, 775
ApoI	RAATTY	6 cut(s)	76, 258, 350, 519, 816, 1052
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	133, 220, 907, 917
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	154, 655, 787
BccI	CCATC	1 cut(s)	740
BciT130I	CCWGG	2 cut(s)	725, 1072
BcoDI	GTCTC	2 cut(s)	872, 887
BfaI	CTAG	5 cut(s)	312, 788, 821, 827, 962
BfmI	CTRYAG	4 cut(s)	197, 557, 641, 846
BglII	AGATCT	1 cut(s)	1064
BisI	GCNGC	3 cut(s)	168, 644, 776
BlsI	GCNGC	3 cut(s)	169, 645, 777
Bme1390I	CCNGG	2 cut(s)	725, 1072
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	291, 387, 636
BmrFI	CCNGG	2 cut(s)	725, 1072
BmsI	GCATC	3 cut(s)	179, 718, 851
BpmI	CTGGAG	1 cut(s)	778
BpuEI	CTTGAG	2 cut(s)	640, 1078
BsaJI	CCNNGG	1 cut(s)	918
BsaWI	WCCGGW	1 cut(s)	927
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 338
Bse1I	ACTGG	2 cut(s)	277, 761
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	725, 1072
BseDI	CCNNGG	1 cut(s)	918
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	2 cut(s)	154, 338
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	372, 522
BseNI	ACTGG	2 cut(s)	277, 761
BseRI	GAGGAG	1 cut(s)	1075
BseXI	GCAGC	3 cut(s)	154, 655, 787
BshFI	GGCC	2 cut(s)	331, 555
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	928
BslI	CCNNNNNNNGG	2 cut(s)	154, 338
BsmAI	GTCTC	2 cut(s)	872, 887
BsmI	GAATGC	1 cut(s)	908
BsnI	GGCC	2 cut(s)	331, 555
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
BspACI	CCGC	3 cut(s)	590, 1029, 1049
BspANI	GGCC	2 cut(s)	331, 555
BspCNI	CTCAG	2 cut(s)	373, 521
BspLI	GGNNCC	3 cut(s)	291, 387, 636
BspMAI	CTGCAG	3 cut(s)	201, 561, 645
BspPI	GGATC	5 cut(s)	413, 472, 629, 642, 650
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	277, 761
BssECI	CCNNGG	1 cut(s)	918
BssMI	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
Bst2UI	CCWGG	2 cut(s)	725, 1072
Bst4CI	ACNGT	5 cut(s)	193, 910, 919, 940, 950
Bst6I	CTCTTC	2 cut(s)	803, 1030
BstC8I	GCNNGC	2 cut(s)	201, 557
BstDEI	CTNAG	4 cut(s)	132, 381, 508, 700
BstDSI	CCRYGG	1 cut(s)	918
BstF5I	GGATG	1 cut(s)	733
BstKTI	GATC	6 cut(s)	303, 408, 480, 637, 658, 1067
BstMAI	GTCTC	2 cut(s)	872, 887
BstMBI	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	725, 1072
BstSCI	CCNGG	2 cut(s)	723, 1070
BstSFI	CTRYAG	4 cut(s)	197, 557, 641, 846
BstV1I	GCAGC	3 cut(s)	154, 655, 787
BstX2I	RGATCY	2 cut(s)	634, 1064
BstYI	RGATCY	2 cut(s)	634, 1064
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	331, 555
BtgI	CCRYGG	1 cut(s)	918
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	270, 955
Cac8I	GCNNGC	2 cut(s)	201, 557
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	1 cut(s)	955
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	4 cut(s)	132, 381, 508, 700
DpnI	GATC	6 cut(s)	302, 407, 479, 636, 657, 1066
DpnII	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	2 cut(s)	803, 1030
EarI	CTCTTC	2 cut(s)	803, 1030
Ecl136II	GAGCTC	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	3 cut(s)	357, 762, 824
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	505
EcoRI	GAATTC	2 cut(s)	258, 1052
EcoRII	CCWGG	2 cut(s)	723, 1070
EcoRV	GATATC	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	1 cut(s)	958
FatI	CATG	1 cut(s)	954
FauI	CCCGC	1 cut(s)	597
FauNDI	CATATG	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	688
Fnu4HI	GCNGC	3 cut(s)	168, 644, 776
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	168, 644, 776
FspBI	CTAG	5 cut(s)	312, 788, 821, 827, 962
GluI	GCNGC	3 cut(s)	168, 644, 776
GsuI	CTGGAG	1 cut(s)	778
HaeIII	GGCC	2 cut(s)	331, 555
HapII	CCGG	1 cut(s)	928
HgaI	GACGC	1 cut(s)	751
Hin1II	CATG	1 cut(s)	958
HincII	GTYRAC	1 cut(s)	689
HindII	GTYRAC	1 cut(s)	689
HindIII	AAGCTT	2 cut(s)	306, 616
HinfI	GANTC	3 cut(s)	217, 931, 995
HpaII	CCGG	1 cut(s)	928
HphI	GGTGA	4 cut(s)	133, 220, 907, 917
Hpy166II	GTNNAC	3 cut(s)	124, 471, 689
Hpy188I	TCNGA	5 cut(s)	325, 655, 742, 767, 804
Hpy188III	TCNNGA	8 cut(s)	24, 510, 632, 659, 875, 968, 1057, 1095
Hpy8I	GTNNAC	3 cut(s)	124, 471, 689
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	4 cut(s)	106, 332, 968, 1009
HpyCH4III	ACNGT	5 cut(s)	193, 910, 919, 940, 950
HpyCH4IV	ACGT	2 cut(s)	186, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	4 cut(s)	132, 381, 508, 700
HpySE526I	ACGT	2 cut(s)	186, 360
Hsp92II	CATG	1 cut(s)	958
Kzo9I	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
LmnI	GCTCC	2 cut(s)	726, 759
Lsp1109I	GCAGC	3 cut(s)	154, 655, 787
LweI	GCATC	3 cut(s)	179, 718, 851
MaeI	CTAG	5 cut(s)	312, 788, 821, 827, 962
MaeII	ACGT	2 cut(s)	186, 360
MaeIII	GTNAC	2 cut(s)	187, 950
MalI	GATC	6 cut(s)	302, 407, 479, 636, 657, 1066
MboI	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
MboII	GAAGA	8 cut(s)	254, 462, 691, 755, 817, 820, 1017, 1059
MflI	RGATCY	2 cut(s)	634, 1064
MhlI	GDGCHC	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	331
MluNI	TGGCCA	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	745
Mox20I	TGGCCA	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	331
MspI	CCGG	1 cut(s)	928
MspR9I	CCNGG	2 cut(s)	725, 1072
Mva1269I	GAATGC	1 cut(s)	908
MvaI	CCWGG	2 cut(s)	725, 1072
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
NlaIII	CATG	1 cut(s)	958
NlaIV	GGNNCC	3 cut(s)	291, 387, 636
NmuCI	GTSAC	1 cut(s)	950
PaeR7I	CTCGAG	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	555
PctI	GAATGC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	217, 931, 995
PfoI	TCCNGGA	2 cut(s)	723, 1070
PkrI	GCNGC	3 cut(s)	169, 645, 777
Psp124BI	GAGCTC	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	723, 1070
PspGI	CCWGG	2 cut(s)	723, 1070
PspN4I	GGNNCC	3 cut(s)	291, 387, 636
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	3 cut(s)	201, 561, 645
PsuI	RGATCY	2 cut(s)	634, 1064
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	687
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	168, 644, 776
Sau3AI	GATC	6 cut(s)	300, 405, 477, 634, 655, 1064
Sau96I	GGNCC	1 cut(s)	386
SbfI	CCTGCAGG	2 cut(s)	201, 561
ScrFI	CCNGG	2 cut(s)	725, 1072
SdaI	CCTGCAGG	2 cut(s)	201, 561
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	179, 718, 851
SfcI	CTRYAG	4 cut(s)	197, 557, 641, 846
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	3 cut(s)	24, 619, 1057
SmoI	CTYRAG	3 cut(s)	24, 619, 1057
Sse8387I	CCTGCAGG	2 cut(s)	201, 561
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	3 cut(s)	590, 1029, 1049
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	5 cut(s)	312, 788, 821, 827, 962
SstI	GAGCTC	1 cut(s)	507
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	723, 1070
TaaI	ACNGT	5 cut(s)	193, 910, 919, 940, 950
TaiI	ACGT	2 cut(s)	189, 363
TaqI	TCGA	4 cut(s)	25, 303, 688, 1006
TfiI	GAWTC	3 cut(s)	217, 931, 995
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	2 cut(s)	277, 955
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	3 cut(s)	167, 643, 775
Tsp45I	GTSAC	1 cut(s)	950
TspDTI	ATGAA	6 cut(s)	17, 21, 26, 546, 987, 1028
TspRI	CASTG	2 cut(s)	277, 955
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	6 cut(s)	76, 258, 350, 519, 816, 1052
XhoI	CTCGAG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	688
XspI	CTAG	5 cut(s)	312, 788, 821, 827, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.