Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

59586352 .. 59590548

Gene Structure 4197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGTTTGTGGAGGGTAGGAGAAAACTTGGATATGAGAGAGGCGAGAGCGGCGGCGTCTTCCGTTGGCTCTAGCAGTGGTGTCTCCTCGTCGCTAGCCTGTGGGCTTGCGTCAGTGGTCGGTGCCGACAAGGTCTTGAGTACAGCAAGGCTTTGCATGGTCGCTCGAAGAGGGTTGCGTCATGGAGGCTCTAGCAAGAAAACTCCAGAGGAGTCTTTGCGAACTAACCTCCCTAGAGATAGCAGTGAAGAGGATATATTTTTGAAGGGTGCACCAGGGGTGCAACTTACAGAAGAAGAAACGAAAGAGATTGGTGATGTCGGATGGAAGCCTTTTTGGGATTATATTTTTGTTTCCAAGGGAATACTTCTTCTATGTTTAGGCCTAATAGCTCATTGTAGATTTGTTGGTGTTCAGGCTTCATCAGATTTAAGTGTTTTGGATTTTGACATACCGTTCTCTATTATCTTTGCCTTGACCGCTGGTATTGTAGTGCTCAGAAATTATTTTCTAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACAACCAAAGCTCATGTCATCAACTATGAAGCTAAGACATCACTTGGAGTCATGACTATAAGAGCTTTTAACATGGTTGACAGGTTCTTCCAAAATTACCTAATGCTAGTTGACACAGATGCAGGACTGTATTTTCATTCTAATGCAGCCATGGAGTGGGCTTGTGCTCTTTCTTATGCTTTAACATTAACAGCATCACAAGTTTTTATGACTCGATGGTATTGTAACTTGTCAAACCACATCATCTCAGTCGAAAGGATAAAACAATTCATGCAGATTTCACCAGAACCTCCAGCAATTGTAGAGGACAAAAGGCCACCATCTTCATGGCCTCAAAAGGGTAGGATAGAGTTAAAATATCGTCCAAATGCTGTGCTAGTTCTCAAGGGAATTATATGCACATTCAAAGAAGGCAGTAGAGCTCTAGAGAAGTGTCAGCTCAAGCCAACAGTTATCAGCCTACCTAATCAACTAGATTCGTCTGTAAGTGAAGAAGGAGAAAATTGGAGCGCCGGGCAGCGCCAGCTGTTTTGCCTTTGGAAGGGTGCTACTCAAGAGGAACAGAATTCTAGTTCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

376

Amino Acids

41.48

Weight (kDa)

8.32

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	702
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	3 cut(s)	50, 53, 480
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	1111
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	4 cut(s)	522, 702, 884, 1087
AgsI	TTSAA	2 cut(s)	265, 952
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	7 cut(s)	392, 557, 578, 611, 968, 985, 1072
AluI	AGCT	7 cut(s)	392, 557, 578, 611, 968, 985, 1072
Alw21I	GWGCWC	4 cut(s)	274, 498, 715, 970
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	382, 860, 875
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	692, 1063
ApoI	RAATTY	1 cut(s)	1111
ArsI	GACNNNNNNTTYG	2 cut(s)	546, 578
AspLEI	GCGC	2 cut(s)	1058, 1068
AsuC2I	CCSGG	1 cut(s)	1060
AsuHPI	GGTGA	2 cut(s)	326, 819
AsuNHI	GCTAGC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	970
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	4 cut(s)	274, 498, 715, 970
BbvI	GCAGC	2 cut(s)	704, 1075
BccI	CCATC	3 cut(s)	318, 756, 874
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	1060
BcoDI	GTCTC	1 cut(s)	88
BfoI	RGCGCY	2 cut(s)	1059, 1069
BisI	GCNGC	4 cut(s)	51, 54, 693, 1064
BlsI	GCNGC	4 cut(s)	52, 55, 694, 1065
Bme1390I	CCNGG	2 cut(s)	276, 1060
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	276, 1060
BmsI	GCATC	2 cut(s)	655, 749
BmtI	GCTAGC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	189, 822
BpuEI	CTTGAG	4 cut(s)	157, 914, 971, 1083
BpuMI	CCSGG	1 cut(s)	1060
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	275, 357, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	522, 702, 884, 1087
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	275, 357, 696
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	4 cut(s)	522, 702, 884, 1087
BseMII	CTCAG	2 cut(s)	511, 807
BseRI	GAGGAG	2 cut(s)	76, 224
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	704, 1075
BshFI	GGCC	3 cut(s)	384, 862, 877
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	4 cut(s)	274, 498, 715, 970
BsiSI	CCGG	1 cut(s)	1059
BslI	CCNNNNNNNGG	4 cut(s)	522, 702, 884, 1087
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	384, 862, 877
Bsp1286I	GDGCHC	4 cut(s)	274, 498, 715, 970
Bsp143I	GATC	1 cut(s)	537
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	3 cut(s)	50, 53, 480
BspANI	GGCC	3 cut(s)	384, 862, 877
BspCNI	CTCAG	2 cut(s)	510, 806
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	124
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	275, 357, 696
BssMI	GATC	1 cut(s)	537
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	357, 696
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	456, 675, 997
Bst6I	CTCTTC	2 cut(s)	163, 243
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	96, 108, 1070
BstDEI	CTNAG	3 cut(s)	497, 579, 793
BstDSI	CCRYGG	1 cut(s)	696
BstENI	CCTNNNNNAGG	2 cut(s)	520, 1085
BstF5I	GGATG	1 cut(s)	329
BstH2I	RGCGCY	2 cut(s)	1059, 1069
BstHHI	GCGC	2 cut(s)	1058, 1068
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 479, 1069
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	274, 1058
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	704, 1075
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	873
BsuRI	GGCC	3 cut(s)	384, 862, 877
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	2 cut(s)	82, 250
BtsIMutI	CAGTG	3 cut(s)	82, 120, 250
Cac8I	GCNNGC	3 cut(s)	96, 108, 1070
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	2 cut(s)	1058, 1068
CseI	GACGC	3 cut(s)	45, 99, 167
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	8 cut(s)	157, 182, 560, 598, 619, 697, 817, 873
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	497, 579, 793
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
Eam1104I	CTCTTC	2 cut(s)	163, 243
EarI	CTCTTC	2 cut(s)	163, 243
Ecl136II	GAGCTC	1 cut(s)	968
Eco130I	CCWWGG	2 cut(s)	357, 696
Eco147I	AGGCCT	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	970
Eco53kI	GAGCTC	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	968
EcoNI	CCTNNNNNAGG	2 cut(s)	520, 1085
EcoRI	GAATTC	1 cut(s)	1111
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	357, 696
EcoT38I	GRGCYC	1 cut(s)	970
ErhI	CCWWGG	2 cut(s)	357, 696
FaeI	CATG	8 cut(s)	160, 185, 563, 601, 622, 700, 820, 876
FatI	CATG	8 cut(s)	156, 181, 559, 597, 618, 696, 816, 872
Fnu4HI	GCNGC	4 cut(s)	51, 54, 693, 1064
FokI	GGATG	1 cut(s)	336
FriOI	GRGCYC	1 cut(s)	970
Fsp4HI	GCNGC	4 cut(s)	51, 54, 693, 1064
GlaI	GCGC	2 cut(s)	1057, 1067
GluI	GCNGC	4 cut(s)	51, 54, 693, 1064
GsuI	CTGGAG	2 cut(s)	189, 822
HaeII	RGCGCY	2 cut(s)	1059, 1069
HaeIII	GGCC	3 cut(s)	384, 862, 877
HapII	CCGG	1 cut(s)	1059
HgaI	GACGC	3 cut(s)	45, 99, 167
HhaI	GCGC	2 cut(s)	1058, 1068
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	8 cut(s)	160, 185, 563, 601, 622, 700, 820, 876
Hin6I	GCGC	2 cut(s)	1056, 1066
HinP1I	GCGC	2 cut(s)	1056, 1066
HincII	GTYRAC	2 cut(s)	625, 658
HindII	GTYRAC	2 cut(s)	625, 658
HinfI	GANTC	4 cut(s)	212, 594, 757, 1022
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	2 cut(s)	326, 819
Hpy166II	GTNNAC	3 cut(s)	272, 625, 658
Hpy188I	TCNGA	3 cut(s)	323, 427, 500
Hpy188III	TCNNGA	6 cut(s)	136, 206, 598, 971, 1100, 1122
Hpy8I	GTNNAC	3 cut(s)	272, 625, 658
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	4 cut(s)	259, 950, 1034, 1081
HpyCH4III	ACNGT	3 cut(s)	456, 675, 997
HpyCH4V	TGCA	8 cut(s)	156, 272, 283, 521, 668, 692, 820, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 479, 1069
HpyF3I	CTNAG	3 cut(s)	497, 579, 793
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	8 cut(s)	160, 185, 563, 601, 622, 700, 820, 876
HspAI	GCGC	2 cut(s)	1056, 1066
Kzo9I	GATC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	1053
Lsp1109I	GCAGC	2 cut(s)	704, 1075
LweI	GCATC	2 cut(s)	655, 749
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	1 cut(s)	539
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	1 cut(s)	537
MboII	GAAGA	9 cut(s)	51, 180, 260, 305, 308, 362, 625, 861, 1049
MfeI	CAATTG	1 cut(s)	843
MhlI	GDGCHC	4 cut(s)	274, 498, 715, 970
MluCI	AATT	7 cut(s)	502, 640, 812, 843, 936, 1048, 1111
MlyI	GAGTC	3 cut(s)	221, 603, 751
MmeI	TCCRAC	1 cut(s)	301
MseI	TTAA	5 cut(s)	431, 615, 728, 734, 899
MslI	CAYNNNNRTG	2 cut(s)	687, 871
MspA1I	CMGCKG	2 cut(s)	482, 1072
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	2 cut(s)	276, 1060
MunI	CAATTG	1 cut(s)	843
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	50, 479, 1069
NciI	CCSGG	1 cut(s)	1060
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	1 cut(s)	537
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	8 cut(s)	160, 185, 563, 601, 622, 700, 820, 876
NlaIV	GGNNCC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	1022
PflFI	GACNNNGTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	702
PkrI	GCNGC	4 cut(s)	52, 55, 694, 1065
PleI	GAGTC	3 cut(s)	220, 602, 751
PpsI	GAGTC	3 cut(s)	220, 602, 751
Psp124BI	GAGCTC	1 cut(s)	970
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	1072
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	687, 871
SacI	GAGCTC	1 cut(s)	970
SaqAI	TTAA	5 cut(s)	431, 615, 728, 734, 899
SatI	GCNGC	4 cut(s)	51, 54, 693, 1064
Sau3AI	GATC	1 cut(s)	537
SchI	GAGTC	3 cut(s)	221, 603, 751
ScrFI	CCNGG	2 cut(s)	276, 1060
SduI	GDGCHC	4 cut(s)	274, 498, 715, 970
SfaNI	GCATC	2 cut(s)	655, 749
SmiMI	CAYNNNNRTG	2 cut(s)	687, 871
SmlI	CTYRAG	4 cut(s)	136, 929, 986, 1098
SmoI	CTYRAG	4 cut(s)	136, 929, 986, 1098
Sse9I	AATT	7 cut(s)	502, 640, 812, 843, 936, 1048, 1111
SseBI	AGGCCT	1 cut(s)	384
SsiI	CCGC	3 cut(s)	50, 53, 480
SstI	GAGCTC	1 cut(s)	970
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	274, 1058
StyI	CCWWGG	2 cut(s)	357, 696
TaaI	ACNGT	3 cut(s)	456, 675, 997
TaqI	TCGA	3 cut(s)	166, 760, 798
TasI	AATT	7 cut(s)	502, 640, 812, 843, 936, 1048, 1111
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	2 cut(s)	53, 56
TfiI	GAWTC	1 cut(s)	1022
Tru1I	TTAA	5 cut(s)	431, 615, 728, 734, 899
Tru9I	TTAA	5 cut(s)	431, 615, 728, 734, 899
TscAI	CASTG	3 cut(s)	82, 120, 250
TseI	GCWGC	2 cut(s)	692, 1063
TspDTI	ATGAA	5 cut(s)	411, 588, 671, 805, 861
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	82, 120, 250
Tth111I	GACNNNGTC	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	702
VneI	GTGCAC	1 cut(s)	270
XagI	CCTNNNNNAGG	2 cut(s)	520, 1085
XapI	RAATTY	1 cut(s)	1111
XbaI	TCTAGA	2 cut(s)	970, 1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.