Rorug01G0165500

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
22564488 .. 22564968
481 bp
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UTR
Exon/CDS
Intron
Rorug01G0165500.1

Sequence Viewer

Length: 228 bp
ATGGTTGCAGTTGCACCAATACTTATATTCAATTGGGATCTTGCTCCAATGTTGATGGAGAGTCAGAAGCTATTGAGCATGGAGCAGGTTCTTCTGGATTTGTTGGCTAGTTTGACTGCTGAAAGTATCTTAAATATTCTGTTCAAGAGCCCAAAGCATCCTTGCCTGATGCAGTCCTCCCCCGCTGGGTATGCCCTTATCACTGACTTCTTCATCCCTCAAATGTAA

Protein Analysis

75

Amino Acids

8.35

Weight (kDa)

4.58

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 31, 145
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AlwI GGATC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 152
BccI CCATC 1 cut(s) 49
BfaI CTAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 76
BmsI GCATC 2 cut(s) 159, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 157, 213
BseLI CCNNNNNNNGG 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 1 cut(s) 45
BssMI GATC 1 cut(s) 37
BstF5I GGATG 2 cut(s) 157, 213
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BtsCI GGATG 2 cut(s) 157, 213
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 76
CviAII CATG 1 cut(s) 79
CviJI RGCY 3 cut(s) 70, 107, 150
CviKI_1 RGCY 3 cut(s) 70, 107, 150
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 26, 80, 192
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 190
FokI GGATG 2 cut(s) 144, 200
FriOI GRGCYC 1 cut(s) 152
FspBI CTAG 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 95, 145
HpyCH4V TGCA 3 cut(s) 8, 14, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 49, 82
LpnPI CCDG 4 cut(s) 71, 80, 171, 179
LweI GCATC 2 cut(s) 159, 166
MaeI CTAG 1 cut(s) 108
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 83, 202
MfeI CAATTG 1 cut(s) 31
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 1 cut(s) 31
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 187, 228
MseI TTAA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 185
MunI CAATTG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 82
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 37
SaqAI TTAA 1 cut(s) 131
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 152
SetI ASST 2 cut(s) 72, 90
SfaNI GCATC 2 cut(s) 159, 166
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 183
SspI AATATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 108
TasI AATT 1 cut(s) 31
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 202
TspRI CASTG 1 cut(s) 208
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.