Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCTGATGGGTATAGACCTCACAGCAGGGAGAGTTTTATCAGCATTAGCCACCTTCAGAATGTTACAAGATCCTATATTTAATCTACCTGATGTCCTCAACGTGATTGCACAGGGAAAAGTTTCCGCAGATAGAGTAGCTTCATATCTCATGGAAGAAGAAATTCAGCAGGATGCCATTGAGCATATTCCAAAAGATCAGATGGAAAACTCCATTGAAATAGAAAATGGAAAATTTGGCTGGAATATTGAGTCAAGCAGCACAACTCTTGATGGAATCCACTTAAAAGTGAGGAGGGGTATGAAAGTGGCAATTTGTGGGGCTGTAGGATCAGGGAATGAAATCAGCGGTACAAAGGCTTATGTTCCTCAATCTCCATGGATTTTGACAGGAAATATCAGGGAGAATATCCTGTTCGGAAATGCATTCGACAAGGTCAAGTATGACAAAACCGTTAAAGCATGTGCATTGGAAAAGGATCTTGAGCTGTTCTCCTCTGGAGATCTAACAGAAATAGGAGAAAGAGGAATTAATATGAGCGGAGGACAGAAACAAAGGATACAAATTGCTCGTGCAGTTTACCAGGATGCTGATATATATCTACTAGATGACCCTTTCAGTGCTGTTGATGCTCACACAGGCACTCAACTCTTTGAGGACTGCATGATGGGAATTCTCAAAGAGAAGACCACACTTTATGTCACCCACCAAGTTGAGTTTCTCCCAGCAGCCGACTTAATTCTGGTGATGCAAGATGGAAAAATTGCACAAGCTGGAAGCTTTGAAGAGCTTCTAAAACAAAATATAGGCTTTGAAGTTTTGGTTGGTGCTCATAGCCGAGCTCTAGAGTCAATCCTAACAGTAGAAAATAGCAGCAGAACTACTCAAACTCCAACATCTGACAATGAATCCTCTACAGATTCCACATCAAATGCTAAACTTCCACAGACACGACAGAAATCAGAGCATAATCTCTCTATAGAGATTACTGAAAAAGAAGGAAAATTGGTTCAAGATGAAGAGAGAGAGAAAGGAGTCATTGGAAAAGAAGTTTACTGGTCTTATTTGACAACTGTGAAAGCTGGTATGCTAGTTCCAGTCATAATCTTGGCACAGTCATCATTCCAAGTACTGCAGGTAGCTAGTAACTATTGGATGGCATGGCTTCACCTCCTACAATTGAGACGGAGCCAAAATTTGGGATTAAGTTCATATTACTTACTTATATACTACTCGCTATTGGAAGTTCACTTTGTGTGCTATTGCGAGCATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

425

Amino Acids

47.37

Weight (kDa)

5.08

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1126
AccB7I	CCANNNNNTGG	1 cut(s)	1198
AccBSI	CCGCTC	1 cut(s)	540
AciI	CCGC	3 cut(s)	126, 348, 540
AclWI	GGATC	3 cut(s)	65, 337, 486
AcsI	RAATTY	4 cut(s)	162, 233, 672, 1195
AcuI	CTGAAG	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	1255
AfaI	GTAC	2 cut(s)	352, 1131
AfiI	CCNNNNNNNGG	1 cut(s)	1198
AgsI	TTSAA	4 cut(s)	218, 785, 815, 1013
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	4 cut(s)	702, 734, 807, 839
AloI	GAACNNNNNNTCC	2 cut(s)	993, 1025
AluBI	AGCT	8 cut(s)	140, 487, 773, 780, 790, 842, 1082, 1142
AluI	AGCT	8 cut(s)	140, 487, 773, 780, 790, 842, 1082, 1142
Alw21I	GWGCWC	2 cut(s)	832, 844
Alw26I	GTCTC	1 cut(s)	1177
AlwI	GGATC	3 cut(s)	65, 337, 486
ApeKI	GCWGC	3 cut(s)	258, 728, 873
ApoI	RAATTY	4 cut(s)	162, 233, 672, 1195
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	3 cut(s)	121, 162, 789
AsuHPI	GGTGA	3 cut(s)	694, 757, 1160
BanII	GRGCYC	1 cut(s)	844
BauI	CACGAG	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	2 cut(s)	832, 844
BbvI	GCAGC	3 cut(s)	270, 740, 885
BccI	CCATC	5 cut(s)	196, 266, 661, 749, 1150
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	1177
BfaI	CTAG	4 cut(s)	605, 845, 1091, 1143
BfmI	CTRYAG	4 cut(s)	324, 915, 978, 1133
BfuAI	ACCTGC	1 cut(s)	1126
BfuI	GTATCC	1 cut(s)	552
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	3 cut(s)	259, 729, 874
BlsI	GCNGC	3 cut(s)	260, 730, 875
BmcAI	AGTACT	1 cut(s)	1131
Bme1390I	CCNGG	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	1190
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	4 cut(s)	163, 577, 619, 738
BpiI	GAAGAC	1 cut(s)	692
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bsc4I	CCNNNNNNNGG	1 cut(s)	1198
Bse1I	ACTGG	2 cut(s)	1061, 1097
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	3 cut(s)	178, 592, 1161
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	1 cut(s)	1198
BseNI	ACTGG	2 cut(s)	1061, 1097
BseRI	GAGGAG	2 cut(s)	307, 484
BseXI	GCAGC	3 cut(s)	270, 740, 885
BseYI	CCCAGC	1 cut(s)	724
BsgI	GTGCAG	1 cut(s)	594
BsiHKAI	GWGCWC	2 cut(s)	832, 844
BslI	CCNNNNNNNGG	1 cut(s)	1198
BsmAI	GTCTC	1 cut(s)	1177
BsmBI	CGTCTC	1 cut(s)	1177
BsmI	GAATGC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	832, 844
Bsp143I	GATC	5 cut(s)	70, 196, 329, 478, 502
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	3 cut(s)	126, 348, 540
BspLI	GGNNCC	1 cut(s)	1190
BspMAI	CTGCAG	1 cut(s)	1137
BspMI	ACCTGC	1 cut(s)	1126
BspPI	GGATC	3 cut(s)	65, 337, 486
BspQI	GCTCTTC	1 cut(s)	780
BsrBI	CCGCTC	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	1061, 1097
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	5 cut(s)	70, 196, 329, 478, 502
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	4 cut(s)	454, 862, 1075, 1116
Bst6I	CTCTTC	2 cut(s)	780, 1014
BstC8I	GCNNGC	1 cut(s)	1268
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	178, 592, 1161
BstKTI	GATC	5 cut(s)	73, 199, 332, 481, 505
BstMAI	GTCTC	1 cut(s)	1177
BstMBI	GATC	5 cut(s)	70, 196, 329, 478, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	4 cut(s)	324, 915, 978, 1133
BstV1I	GCAGC	3 cut(s)	270, 740, 885
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	3 cut(s)	70, 478, 502
BstYI	RGATCY	3 cut(s)	70, 478, 502
BsuI	GTATCC	1 cut(s)	552
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	178, 592, 1161
BtsIMutI	CAGTG	1 cut(s)	625
BveI	ACCTGC	1 cut(s)	1126
Cac8I	GCNNGC	1 cut(s)	1268
Csp6I	GTAC	2 cut(s)	351, 1130
CviAII	CATG	5 cut(s)	151, 378, 462, 664, 1161
CviQI	GTAC	2 cut(s)	351, 1130
DpnI	GATC	5 cut(s)	72, 198, 331, 480, 504
DpnII	GATC	5 cut(s)	70, 196, 329, 478, 502
DraIII	CACNNNGTG	1 cut(s)	1255
Eam1104I	CTCTTC	2 cut(s)	780, 1014
EarI	CTCTTC	2 cut(s)	780, 1014
Ecl136II	GAGCTC	1 cut(s)	842
Eco130I	CCWWGG	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	844
Eco53kI	GAGCTC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	842
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	1177
FaeI	CATG	5 cut(s)	154, 381, 465, 667, 1164
FatI	CATG	5 cut(s)	150, 377, 461, 663, 1160
Fnu4HI	GCNGC	3 cut(s)	259, 729, 874
FokI	GGATG	3 cut(s)	185, 599, 1168
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	3 cut(s)	259, 729, 874
FspBI	CTAG	4 cut(s)	605, 845, 1091, 1143
GluI	GCNGC	3 cut(s)	259, 729, 874
GsaI	CCCAGC	1 cut(s)	728
GsuI	CTGGAG	1 cut(s)	519
Hin1II	CATG	5 cut(s)	154, 381, 465, 667, 1164
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	6 cut(s)	251, 276, 848, 908, 920, 1035
HphI	GGTGA	3 cut(s)	694, 757, 1160
Hpy166II	GTNNAC	3 cut(s)	580, 1054, 1249
Hpy188I	TCNGA	5 cut(s)	59, 201, 419, 901, 964
Hpy188III	TCNNGA	5 cut(s)	269, 482, 498, 845, 1013
Hpy8I	GTNNAC	3 cut(s)	580, 1054, 1249
HpyAV	CCTTC	2 cut(s)	64, 992
HpyCH4III	ACNGT	4 cut(s)	454, 862, 1075, 1116
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	8 cut(s)	110, 425, 467, 575, 663, 751, 767, 1135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	154, 381, 465, 667, 1164
Kzo9I	GATC	5 cut(s)	70, 196, 329, 478, 502
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	1 cut(s)	1188
Lsp1109I	GCAGC	3 cut(s)	270, 740, 885
LweI	GCATC	4 cut(s)	163, 577, 619, 738
MaeI	CTAG	4 cut(s)	605, 845, 1091, 1143
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	63, 700, 1145
MalI	GATC	5 cut(s)	72, 198, 331, 480, 504
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	5 cut(s)	70, 196, 329, 478, 502
MboII	GAAGA	5 cut(s)	167, 170, 697, 797, 1031
MfeI	CAATTG	1 cut(s)	1178
MflI	RGATCY	3 cut(s)	70, 478, 502
MhlI	GDGCHC	2 cut(s)	832, 844
MlyI	GAGTC	3 cut(s)	260, 857, 1044
MmeI	TCCRAC	1 cut(s)	917
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	3 cut(s)	121, 162, 789
MseI	TTAA	6 cut(s)	81, 284, 456, 531, 737, 1205
MspA1I	CMGCKG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	1178
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	629
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	5 cut(s)	70, 196, 329, 478, 502
NlaIII	CATG	5 cut(s)	154, 381, 465, 667, 1164
NlaIV	GGNNCC	1 cut(s)	1190
NmeAIII	GCCGAG	1 cut(s)	863
NmuCI	GTSAC	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	780
PctI	GAATGC	1 cut(s)	425
PdmI	GAANNNNTTC	3 cut(s)	121, 162, 789
PfeI	GAWTC	3 cut(s)	276, 908, 920
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	1198
PkrI	GCNGC	3 cut(s)	260, 730, 875
PleI	GAGTC	3 cut(s)	259, 856, 1043
PpsI	GAGTC	3 cut(s)	259, 856, 1043
PshBI	ATTAAT	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	1190
PstI	CTGCAG	1 cut(s)	1137
PsuI	RGATCY	3 cut(s)	70, 478, 502
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	2 cut(s)	352, 1131
RsaNI	GTAC	2 cut(s)	351, 1130
SacI	GAGCTC	1 cut(s)	844
SapI	GCTCTTC	1 cut(s)	780
SaqAI	TTAA	6 cut(s)	81, 284, 456, 531, 737, 1205
SatI	GCNGC	3 cut(s)	259, 729, 874
Sau3AI	GATC	5 cut(s)	70, 196, 329, 478, 502
ScaI	AGTACT	1 cut(s)	1131
SchI	GAGTC	3 cut(s)	260, 857, 1044
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	2 cut(s)	832, 844
SfaNI	GCATC	4 cut(s)	163, 577, 619, 738
SfcI	CTRYAG	4 cut(s)	324, 915, 978, 1133
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SsiI	CCGC	3 cut(s)	126, 348, 540
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	4 cut(s)	605, 845, 1091, 1143
SstI	GAGCTC	1 cut(s)	844
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	4 cut(s)	454, 862, 1075, 1116
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	429
TatI	WGTACW	1 cut(s)	1129
TfiI	GAWTC	3 cut(s)	276, 908, 920
Tru1I	TTAA	6 cut(s)	81, 284, 456, 531, 737, 1205
Tru9I	TTAA	6 cut(s)	81, 284, 456, 531, 737, 1205
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	3 cut(s)	258, 728, 873
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	6 cut(s)	132, 317, 354, 921, 1032, 1200
TspGWI	ACGGA	1 cut(s)	1201
TspRI	CASTG	1 cut(s)	625
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	1198
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	4 cut(s)	162, 233, 672, 1195
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	1 cut(s)	465
XmnI	GAANNNNTTC	3 cut(s)	121, 162, 789
XspI	CTAG	4 cut(s)	605, 845, 1091, 1143
ZrmI	AGTACT	1 cut(s)	1131
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.