Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

61906687 .. 61916261

Gene Structure 9575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG437200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAATTATTATCTAGCCTCTGCAAGGGAACTAATAATAAGGATAAATGGAACAACCAAAGCTCATGCCATCAACTATGCAGCTGAGACATCACTTGGAGTCGTGACTATAAGAGCTTTTAACATGGTTGACAGGTTCTTCCAAAATTACCTAAAGCTAGTTGACACAGATGCAGGACTGTATTTTCATTCTAATGCAGCCATGGAGTGGTTAATTATAAGGACAGAAGCACTTCAGAACTTGACAATTTTCACTGCTGCTTTTCTCCTTATTTTACTTCCCAAGGGTTATGTTGCTCCAGGTATTTTCATGCAGTTTCATACTGAGGAATTTGAAGGAGCAAGAGTTTTGCCTCCTTTTTGTGGATGTGTGCAGAGCTTGTGGGGCTCTCTTTCTTATGCTTTAACACTAACAGCATCACAAGTTTTTATGACTCGATGGTATTGTAACTTGTCAAACTACGTCATCTCAGTCGAAAGGCTAAAACAATTCATGCAGATTTCACCAGAACCTCCAGCAATTGTAGAGGACAAAAGGCCACCATCTTCATGGCCTCAAAAGGGTAGGATAGAGGTGTTTTCTCTGAAGTTAAAATATCCTCCAAATGCTCCGCTAGTTCTCAAGGGAATTACATGCATATTCAAAGAAGGCAGTAGAGTAGGAGTTGTGGGAAGAACGGGAAGTGGAAAAACTATACTCATCATCCCTCAAGAACCGACTCTTTTCAAGGGTAGCATTCGAACCAACTTGGATCCTCTCGGCCTTTATTCTGACAATGAAATACGGAGGGCTCTAGAGAAGCGTCAGCTCAAGCCAACAGTTATCAGCCTACCAAATCAACTAGATTCGTCTGGGAGTGCTTACCCCTCTGGATTTTTGATTCAGAACATGAATTGGGTTCTTAAAATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

304

Amino Acids

34.19

Weight (kDa)

9.37

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	207
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	2 cut(s)	746, 759
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	2 cut(s)	218, 605
AfiI	CCNNNNNNNGG	4 cut(s)	24, 207, 362, 560
AgsI	TTSAA	3 cut(s)	335, 643, 727
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	6 cut(s)	62, 83, 116, 157, 378, 808
AluI	AGCT	6 cut(s)	62, 83, 116, 157, 378, 808
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	746, 759
AoxI	GGCC	3 cut(s)	536, 551, 760
ApeKI	GCWGC	3 cut(s)	80, 197, 257
ApoI	RAATTY	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	495
AsuII	TTCGAA	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	389, 793
BbvI	GCAGC	3 cut(s)	92, 209, 244
BccI	CCATC	3 cut(s)	77, 432, 550
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	5 cut(s)	14, 158, 614, 794, 842
BisI	GCNGC	3 cut(s)	81, 198, 258
BlsI	GCNGC	3 cut(s)	82, 199, 259
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	160, 425
BpmI	CTGGAG	2 cut(s)	282, 498
Bpu14I	TTCGAA	1 cut(s)	739
BpuEI	CTTGAG	3 cut(s)	605, 693, 794
BsaJI	CCNNGG	2 cut(s)	201, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 207, 362, 560
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	201, 282
BseGI	GGATG	2 cut(s)	371, 702
BseLI	CCNNNNNNNGG	4 cut(s)	24, 207, 362, 560
BseMII	CTCAG	3 cut(s)	75, 315, 483
BseXI	GCAGC	3 cut(s)	92, 209, 244
BsgI	GTGCAG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	538, 553, 762
BslI	CCNNNNNNNGG	4 cut(s)	24, 207, 362, 560
BsmAI	GTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	538, 553, 762
Bsp119I	TTCGAA	1 cut(s)	739
Bsp1286I	GDGCHC	2 cut(s)	389, 793
Bsp143I	GATC	1 cut(s)	751
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	3 cut(s)	538, 553, 762
BspCNI	CTCAG	3 cut(s)	76, 316, 482
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	2 cut(s)	746, 759
BspT104I	TTCGAA	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	201, 282
BssMI	GATC	1 cut(s)	751
BssT1I	CCWWGG	2 cut(s)	201, 282
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	180, 820
BstBI	TTCGAA	1 cut(s)	739
BstDEI	CTNAG	3 cut(s)	84, 324, 469
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	371, 702
BstKTI	GATC	1 cut(s)	754
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	751
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	92, 209, 244
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	538, 553, 762
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	371, 702
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 910
CseI	GACGC	1 cut(s)	791
CviAII	CATG	8 cut(s)	65, 124, 202, 310, 493, 549, 633, 889
DdeI	CTNAG	3 cut(s)	84, 324, 469
DpnI	GATC	1 cut(s)	753
DpnII	GATC	1 cut(s)	751
Eco130I	CCWWGG	2 cut(s)	201, 282
Eco24I	GRGCYC	2 cut(s)	389, 793
Eco57I	CTGAAG	2 cut(s)	218, 605
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	201, 282
EcoT22I	ATGCAT	1 cut(s)	638
EcoT38I	GRGCYC	2 cut(s)	389, 793
ErhI	CCWWGG	2 cut(s)	201, 282
FaeI	CATG	8 cut(s)	68, 127, 205, 313, 496, 552, 636, 892
FatI	CATG	8 cut(s)	64, 123, 201, 309, 492, 548, 632, 888
Fnu4HI	GCNGC	3 cut(s)	81, 198, 258
FokI	GGATG	2 cut(s)	378, 689
FriOI	GRGCYC	2 cut(s)	389, 793
Fsp4HI	GCNGC	3 cut(s)	81, 198, 258
FspBI	CTAG	5 cut(s)	14, 158, 614, 794, 842
GluI	GCNGC	3 cut(s)	81, 198, 258
GsuI	CTGGAG	2 cut(s)	282, 498
HaeIII	GGCC	3 cut(s)	538, 553, 762
HgaI	GACGC	1 cut(s)	791
Hin1II	CATG	8 cut(s)	68, 127, 205, 313, 496, 552, 636, 892
HincII	GTYRAC	2 cut(s)	130, 163
HindII	GTYRAC	2 cut(s)	130, 163
HinfI	GANTC	5 cut(s)	99, 433, 718, 845, 880
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	2 cut(s)	130, 163
Hpy188I	TCNGA	4 cut(s)	237, 585, 772, 885
Hpy188III	TCNNGA	4 cut(s)	103, 710, 794, 870
Hpy8I	GTNNAC	2 cut(s)	130, 163
HpyAV	CCTTC	2 cut(s)	329, 641
HpyCH4III	ACNGT	2 cut(s)	180, 820
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	9 cut(s)	23, 80, 173, 197, 313, 373, 496, 636, 910
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	3 cut(s)	84, 324, 469
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	8 cut(s)	68, 127, 205, 313, 496, 552, 636, 892
Kzo9I	GATC	1 cut(s)	751
LmnI	GCTCC	3 cut(s)	301, 338, 613
LpnPI	CCDG	8 cut(s)	118, 159, 285, 312, 519, 528, 837, 855
Lsp1109I	GCAGC	3 cut(s)	92, 209, 244
LweI	GCATC	2 cut(s)	160, 425
MaeI	CTAG	5 cut(s)	14, 158, 614, 794, 842
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	103, 446
MalI	GATC	1 cut(s)	753
MboI	GATC	1 cut(s)	751
MboII	GAAGA	3 cut(s)	130, 537, 684
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	2 cut(s)	389, 793
MluCI	AATT	9 cut(s)	4, 145, 213, 246, 329, 488, 519, 627, 892
MlyI	GAGTC	3 cut(s)	108, 427, 712
Mph1103I	ATGCAT	1 cut(s)	638
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	5 cut(s)	120, 212, 404, 590, 903
MslI	CAYNNNNRTG	2 cut(s)	192, 547
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	1 cut(s)	751
NlaIII	CATG	8 cut(s)	68, 127, 205, 313, 496, 552, 636, 892
NlaIV	GGNNCC	1 cut(s)	753
NmeAIII	GCCGAG	1 cut(s)	738
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	638
NspI	RCATGY	1 cut(s)	636
NspV	TTCGAA	1 cut(s)	739
PctI	GAATGC	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	845, 880
PflMI	CCANNNNNTGG	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	82, 199, 259
PleI	GAGTC	3 cut(s)	107, 427, 712
PpsI	GAGTC	3 cut(s)	107, 427, 712
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	753
PsuI	RGATCY	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	2 cut(s)	192, 547
SaqAI	TTAA	5 cut(s)	120, 212, 404, 590, 903
SatI	GCNGC	3 cut(s)	81, 198, 258
Sau3AI	GATC	1 cut(s)	751
SchI	GAGTC	3 cut(s)	108, 427, 712
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	389, 793
SfaNI	GCATC	2 cut(s)	160, 425
SfuI	TTCGAA	1 cut(s)	739
SmiMI	CAYNNNNRTG	2 cut(s)	192, 547
SmlI	CTYRAG	3 cut(s)	620, 708, 809
SmoI	CTYRAG	3 cut(s)	620, 708, 809
Sse9I	AATT	9 cut(s)	4, 145, 213, 246, 329, 488, 519, 627, 892
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	5 cut(s)	14, 158, 614, 794, 842
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	201, 282
TaaI	ACNGT	2 cut(s)	180, 820
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	436, 474, 739
TasI	AATT	9 cut(s)	4, 145, 213, 246, 329, 488, 519, 627, 892
TfiI	GAWTC	2 cut(s)	845, 880
Tru1I	TTAA	5 cut(s)	120, 212, 404, 590, 903
Tru9I	TTAA	5 cut(s)	120, 212, 404, 590, 903
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	3 cut(s)	80, 197, 257
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	8 cut(s)	17, 176, 298, 308, 481, 537, 792, 905
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	1 cut(s)	259
Van91I	CCANNNNNTGG	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	329
XbaI	TCTAGA	1 cut(s)	793
XceI	RCATGY	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	5 cut(s)	14, 158, 614, 794, 842
Zsp2I	ATGCAT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.