Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

63517976 .. 63518949

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG427500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTTCTATCACATGGCAAGTTCTCATTGCAGCCATTCCTGCCATGGCTGCTGTTAAATATGTTCAGAATTATTATCTAGCCTCTGCAAGGGAACTAATAATAAGGATAAATGGAACAACCAAAGCTCTTGTCATCAACTATGCAGCTGAGACATCACTTGGAGTCGTGACTATAAGAGCTTTTAACATGGTTGACAGGTTCTTCCAAAATTACCTAAAGCTAGTTGACACAGATGCAGGACTGTATTTTCATTCTAATGCAGCCATGGAGTGGTTAATTATAAGGACAGAAGCACTTCAGAACTTGACAATTTTCACTGCTGCTTTTCTCCTTATTTTACTTCCCAAGGGCTATGTTGCTCCAGTCGAAAGGATAAAACAATTCATGCAGATTTCACCAGAAGCTCCAGCAATTGTAGAGGACAAAAGGCCACCATCTTCATGGCCTCAAAAGGGTAGGATAGAGTTAAAATATCCTCCAAATGCTCCGCTAGTTCTCAAGGGAATTACATGCATATTCAAAGAAGGCAGTAAAGTAGGAGTTGTGGGAAGAACGGGAAGTGGAAAAACTATACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

193

Amino Acids

21.37

Weight (kDa)

9.65

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	273
AciI	CCGC	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	284
AfiI	CCNNNNNNNGG	3 cut(s)	90, 273, 455
AgsI	TTSAA	1 cut(s)	523
AluBI	AGCT	5 cut(s)	128, 149, 182, 223, 407
AluI	AGCT	5 cut(s)	128, 149, 182, 223, 407
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	431, 446
ApeKI	GCWGC	5 cut(s)	32, 50, 146, 263, 323
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
Asp700I	GAANNNNTTC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	390
BbvI	GCAGC	5 cut(s)	37, 44, 158, 275, 310
BccI	CCATC	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	3 cut(s)	80, 224, 494
BisI	GCNGC	5 cut(s)	33, 51, 147, 264, 324
BlsI	GCNGC	5 cut(s)	34, 52, 148, 265, 325
BmsI	GCATC	1 cut(s)	226
BpmI	CTGGAG	2 cut(s)	348, 393
BpuEI	CTTGAG	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	45, 267, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 273, 455
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	45, 267, 348
BseLI	CCNNNNNNNGG	3 cut(s)	90, 273, 455
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	5 cut(s)	37, 44, 158, 275, 310
BshFI	GGCC	2 cut(s)	433, 448
BslI	CCNNNNNNNGG	3 cut(s)	90, 273, 455
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	433, 448
Bsp19I	CCATGG	2 cut(s)	45, 267
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	2 cut(s)	433, 448
BspCNI	CTCAG	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	45, 267, 348
BssT1I	CCWWGG	3 cut(s)	45, 267, 348
Bst4CI	ACNGT	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	2 cut(s)	45, 267
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNSI	RCATGY	1 cut(s)	516
BstV1I	GCAGC	5 cut(s)	37, 44, 158, 275, 310
BstXI	CCANNNNNNTGG	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	433, 448
BtgI	CCRYGG	2 cut(s)	45, 267
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
CviAII	CATG	7 cut(s)	15, 46, 190, 268, 388, 444, 513
DdeI	CTNAG	1 cut(s)	150
Eco130I	CCWWGG	3 cut(s)	45, 267, 348
Eco57I	CTGAAG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoT14I	CCWWGG	3 cut(s)	45, 267, 348
EcoT22I	ATGCAT	1 cut(s)	518
ErhI	CCWWGG	3 cut(s)	45, 267, 348
FaeI	CATG	7 cut(s)	18, 49, 193, 271, 391, 447, 516
FatI	CATG	7 cut(s)	14, 45, 189, 267, 387, 443, 512
Fnu4HI	GCNGC	5 cut(s)	33, 51, 147, 264, 324
Fsp4HI	GCNGC	5 cut(s)	33, 51, 147, 264, 324
FspBI	CTAG	3 cut(s)	80, 224, 494
GluI	GCNGC	5 cut(s)	33, 51, 147, 264, 324
GsuI	CTGGAG	2 cut(s)	348, 393
HaeIII	GGCC	2 cut(s)	433, 448
Hin1II	CATG	7 cut(s)	18, 49, 193, 271, 391, 447, 516
HincII	GTYRAC	2 cut(s)	196, 229
HindII	GTYRAC	2 cut(s)	196, 229
HinfI	GANTC	1 cut(s)	165
HphI	GGTGA	1 cut(s)	390
Hpy166II	GTNNAC	2 cut(s)	196, 229
Hpy188I	TCNGA	2 cut(s)	69, 303
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	196, 229
HpyAV	CCTTC	1 cut(s)	521
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	7 cut(s)	32, 89, 146, 239, 263, 391, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	7 cut(s)	18, 49, 193, 271, 391, 447, 516
LmnI	GCTCC	3 cut(s)	367, 412, 493
LpnPI	CCDG	6 cut(s)	54, 184, 225, 378, 414, 423
Lsp1109I	GCAGC	5 cut(s)	37, 44, 158, 275, 310
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	80, 224, 494
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	196, 432, 564
MfeI	CAATTG	1 cut(s)	414
MluCI	AATT	7 cut(s)	70, 211, 279, 312, 383, 414, 507
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	4 cut(s)	94, 415, 459, 489
Mph1103I	ATGCAT	1 cut(s)	518
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	4 cut(s)	57, 186, 278, 470
MslI	CAYNNNNRTG	2 cut(s)	258, 442
MspA1I	CMGCKG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NcoI	CCATGG	2 cut(s)	45, 267
NlaIII	CATG	7 cut(s)	18, 49, 193, 271, 391, 447, 516
NmuCI	GTSAC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	297
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	34, 52, 148, 265, 325
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	2 cut(s)	258, 442
SaqAI	TTAA	4 cut(s)	57, 186, 278, 470
SatI	GCNGC	5 cut(s)	33, 51, 147, 264, 324
SchI	GAGTC	1 cut(s)	174
SetI	ASST	7 cut(s)	130, 151, 184, 203, 219, 225, 409
SfaNI	GCATC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	258, 442
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	7 cut(s)	70, 211, 279, 312, 383, 414, 507
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	3 cut(s)	80, 224, 494
StyI	CCWWGG	3 cut(s)	45, 267, 348
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	369
TasI	AATT	7 cut(s)	70, 211, 279, 312, 383, 414, 507
Tru1I	TTAA	4 cut(s)	57, 186, 278, 470
Tru9I	TTAA	4 cut(s)	57, 186, 278, 470
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	5 cut(s)	32, 50, 146, 263, 323
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	242, 376, 432
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	88
XceI	RCATGY	1 cut(s)	516
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 441
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	3 cut(s)	80, 224, 494
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.