Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002271.1

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

61636 .. 62916

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002271.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggaaaacaagataatatctgtggagagaatactacagtatactactagtataccaagtgaaccccctctggtaatagattctaacagacctgatcattcctggccatcgcaaggaaaagttgatatgcatgatcttcaggtgcggtatgctccacacatgccacttgtgttgcggggtcttacatgttccttccctggaggaatgaaaactgggattgtggggagaactggcagtggaaagtcaactctcattcaaactcttttccgaatcgttgatcctgctgctggccggattttgatagatggcatcgatatctcttctattggattgcatgatctgcggtctaagctaagcattatccctcaggacccaaccatgtttgaaggaactgtaagaagcaatctggacccacttgaagagtatacagatgaacaaatttgggaggccctggataaatgccaacttggagatgaagttaggaaacaacaagggaagcttgattctacagttagtgaaaatggagagaactggagtatgggtcagaggcagctggtttgcctgggccgtgtgctcctcaagaaaagtaaagtcctggtgcttgatgaagctactgcatctgttgatactgctacagataatttgattcagcagacccttcggcatcacttttcagactgtacggtcattactattgcgcatcgaataacttctgttcttgacagtgacatggttctacttttaagtcatgggcttattgaggaatgtgattctcctgcaagattgctagaaaacaagttatcatcttttgcccaacttgtagcagagtatacaatgagatcgaattccacttttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

286

Amino Acids

31.77

Weight (kDa)

5.3

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
Acc16I	TGCGCA	1 cut(s)	699
AccI	GTMKAC	4 cut(s)	41, 52, 425, 830
AciI	CCGC	3 cut(s)	145, 175, 343
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	2 cut(s)	104, 289
AcsI	RAATTY	2 cut(s)	438, 844
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	2 cut(s)	113, 287
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	257, 386, 419
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	5 cut(s)	101, 196, 450, 561, 594
AluBI	AGCT	4 cut(s)	352, 499, 553, 611
AluI	AGCT	4 cut(s)	352, 499, 553, 611
Alw21I	GWGCWC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	4 cut(s)	104, 289, 447, 565
ApeKI	GCWGC	2 cut(s)	284, 550
ApoI	RAATTY	2 cut(s)	438, 844
Asp700I	GAANNNNTTC	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	4 cut(s)	370, 409, 448, 565
AvaII	GGWCC	2 cut(s)	370, 409
AxyI	CCTNAGG	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	271, 562
BccI	CCATC	2 cut(s)	115, 299
BceAI	ACGGC	1 cut(s)	552
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	5 cut(s)	103, 198, 452, 563, 596
BclI	TGATCA	1 cut(s)	94
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	48, 788
BfmI	CTRYAG	3 cut(s)	35, 507, 633
BisI	GCNGC	2 cut(s)	285, 551
BlpI	GCTNAGC	1 cut(s)	353
BlsI	GCNGC	2 cut(s)	286, 552
Bme1390I	CCNGG	5 cut(s)	103, 198, 452, 563, 596
Bme18I	GGWCC	2 cut(s)	370, 409
BmgT120I	GGNCC	4 cut(s)	370, 409, 448, 565
BmiI	GGNNCC	2 cut(s)	372, 411
BmrFI	CCNGG	5 cut(s)	103, 198, 452, 563, 596
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	4 cut(s)	318, 626, 673, 709
BmuI	ACTGGG	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	219, 553
Bpu1102I	GCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	563
Bsa29I	ATCGAT	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	196, 450, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	462, 492, 526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 287
Bse1I	ACTGG	3 cut(s)	217, 235, 536
Bse21I	CCTNAGG	1 cut(s)	366
BseBI	CCWGG	5 cut(s)	103, 198, 452, 563, 596
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	196, 450, 562
BseLI	CCNNNNNNNGG	2 cut(s)	113, 287
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	3 cut(s)	217, 235, 536
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	271, 562
BshFI	GGCC	4 cut(s)	106, 291, 449, 567
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	113, 287
BsnI	GGCC	4 cut(s)	106, 291, 449, 567
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	94, 133, 277, 337, 839
Bsp1720I	GCTNAGC	1 cut(s)	353
BspACI	CCGC	3 cut(s)	145, 175, 343
BspANI	GGCC	4 cut(s)	106, 291, 449, 567
BspCNI	CTCAG	1 cut(s)	379
BspDI	ATCGAT	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	372, 411
BspPI	GGATC	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	217, 235, 536
BssECI	CCNNGG	3 cut(s)	196, 450, 562
BssMI	GATC	5 cut(s)	94, 133, 277, 337, 839
BssNAI	GTATAC	4 cut(s)	42, 53, 426, 831
Bst1107I	GTATAC	4 cut(s)	42, 53, 426, 831
Bst2UI	CCWGG	5 cut(s)	103, 198, 452, 563, 596
Bst4CI	ACNGT	6 cut(s)	39, 394, 511, 680, 685, 725
Bst6I	CTCTTC	2 cut(s)	325, 414
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	348, 353, 366
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	5 cut(s)	97, 136, 280, 340, 842
BstMBI	GATC	5 cut(s)	94, 133, 277, 337, 839
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 349
BstNI	CCWGG	5 cut(s)	103, 198, 452, 563, 596
BstNSI	RCATGY	2 cut(s)	163, 189
BstSCI	CCNGG	5 cut(s)	101, 196, 450, 561, 594
BstSFI	CTRYAG	3 cut(s)	35, 507, 633
BstV1I	GCAGC	2 cut(s)	271, 562
BstZ17I	GTATAC	4 cut(s)	42, 53, 426, 831
Bsu15I	ATCGAT	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	4 cut(s)	106, 291, 449, 567
BsuTUI	ATCGAT	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	241, 730
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	700
Cfr13I	GGNCC	4 cut(s)	370, 409, 448, 565
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	681
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	7 cut(s)	131, 160, 186, 335, 379, 730, 749
CviJI	RGCY	9 cut(s)	106, 291, 352, 449, 499, 553, 567, 611, 754
CviKI_1	RGCY	9 cut(s)	106, 291, 352, 449, 499, 553, 567, 611, 754
CviQI	GTAC	1 cut(s)	681
DdeI	CTNAG	3 cut(s)	348, 353, 366
DpnI	GATC	5 cut(s)	96, 135, 279, 339, 841
DpnII	GATC	5 cut(s)	94, 133, 277, 337, 839
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
EaeI	YGGCCR	2 cut(s)	104, 289
Eam1104I	CTCTTC	2 cut(s)	325, 414
EarI	CTCTTC	2 cut(s)	325, 414
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	370, 409
Eco57I	CTGAAG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	370, 448
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	5 cut(s)	101, 196, 450, 561, 594
EcoRV	GATATC	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	7 cut(s)	134, 163, 189, 338, 382, 733, 752
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	7 cut(s)	130, 159, 185, 334, 378, 729, 748
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	4 cut(s)	41, 52, 425, 830
Fnu4HI	GCNGC	2 cut(s)	285, 551
Fsp4HI	GCNGC	2 cut(s)	285, 551
FspBI	CTAG	2 cut(s)	48, 788
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	2 cut(s)	285, 551
GsuI	CTGGAG	2 cut(s)	219, 553
HaeIII	GGCC	4 cut(s)	106, 291, 449, 567
HapII	CCGG	1 cut(s)	292
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	7 cut(s)	134, 163, 189, 338, 382, 733, 752
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	5 cut(s)	80, 270, 503, 646, 770
HpaII	CCGG	1 cut(s)	292
Hpy166II	GTNNAC	6 cut(s)	42, 53, 62, 246, 426, 831
Hpy188I	TCNGA	3 cut(s)	269, 546, 676
Hpy188III	TCNNGA	4 cut(s)	368, 407, 580, 719
Hpy8I	GTNNAC	6 cut(s)	42, 53, 62, 246, 426, 831
HpyAV	CCTTC	3 cut(s)	202, 380, 668
HpyCH4III	ACNGT	6 cut(s)	39, 394, 511, 680, 685, 725
HpyCH4V	TGCA	4 cut(s)	130, 334, 617, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 349
HpyF3I	CTNAG	3 cut(s)	348, 353, 366
Hsp92II	CATG	7 cut(s)	134, 163, 189, 338, 382, 733, 752
HspAI	GCGC	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	94, 133, 277, 337, 839
LmnI	GCTCC	2 cut(s)	157, 579
Lsp1109I	GCAGC	2 cut(s)	271, 562
LweI	GCATC	4 cut(s)	318, 626, 673, 709
MaeI	CTAG	2 cut(s)	48, 788
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	5 cut(s)	96, 135, 279, 339, 841
MboI	GATC	5 cut(s)	94, 133, 277, 337, 839
MboII	GAAGA	3 cut(s)	128, 312, 431
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	3 cut(s)	438, 640, 844
MluNI	TGGCCA	1 cut(s)	106
MnlI	CCTC	7 cut(s)	78, 194, 375, 439, 540, 587, 754
Mox20I	TGGCCA	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	106
MseI	TTAA	1 cut(s)	743
Msp20I	TGGCCA	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	553
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	5 cut(s)	103, 198, 452, 563, 596
MvaI	CCWGG	5 cut(s)	103, 198, 452, 563, 596
MwoI	GCNNNNNNNGC	2 cut(s)	340, 349
NdeII	GATC	5 cut(s)	94, 133, 277, 337, 839
NlaIII	CATG	7 cut(s)	134, 163, 189, 338, 382, 733, 752
NlaIV	GGNNCC	2 cut(s)	372, 411
NmuCI	GTSAC	1 cut(s)	725
NsbI	TGCGCA	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	2 cut(s)	163, 189
PciI	ACATGT	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	5 cut(s)	80, 270, 503, 646, 770
PkrI	GCNGC	2 cut(s)	286, 552
PpuMI	RGGWCCY	1 cut(s)	370
PscI	ACATGT	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	5 cut(s)	101, 196, 450, 561, 594
PspGI	CCWGG	5 cut(s)	101, 196, 450, 561, 594
PspN4I	GGNNCC	2 cut(s)	372, 411
PspPI	GGNCC	4 cut(s)	370, 409, 448, 565
PspPPI	RGGWCCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
SaqAI	TTAA	1 cut(s)	743
SatI	GCNGC	2 cut(s)	285, 551
Sau3AI	GATC	5 cut(s)	94, 133, 277, 337, 839
Sau96I	GGNCC	4 cut(s)	370, 409, 448, 565
ScrFI	CCNGG	5 cut(s)	103, 198, 452, 563, 596
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	6 cut(s)	94, 144, 354, 501, 555, 613
SfaNI	GCATC	4 cut(s)	318, 626, 673, 709
SfcI	CTRYAG	3 cut(s)	35, 507, 633
SinI	GGWCC	2 cut(s)	370, 409
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	3 cut(s)	438, 640, 844
SsiI	CCGC	3 cut(s)	145, 175, 343
SspMI	CTAG	2 cut(s)	48, 788
StyD4I	CCNGG	5 cut(s)	101, 196, 450, 561, 594
TaaI	ACNGT	6 cut(s)	39, 394, 511, 680, 685, 725
TaqI	TCGA	3 cut(s)	312, 703, 842
TasI	AATT	3 cut(s)	438, 640, 844
TfiI	GAWTC	5 cut(s)	80, 270, 503, 646, 770
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TscAI	CASTG	2 cut(s)	241, 730
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	2 cut(s)	284, 550
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	4 cut(s)	221, 447, 489, 621
TspRI	CASTG	2 cut(s)	241, 730
VpaK11BI	GGWCC	2 cut(s)	370, 409
XapI	RAATTY	2 cut(s)	438, 844
XceI	RCATGY	2 cut(s)	163, 189
XmiI	GTMKAC	4 cut(s)	41, 52, 425, 830
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	2 cut(s)	48, 788
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.