Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014259.1

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

29952 .. 32052

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014259.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcgatggcggccgattcaaattccggcgatccaatctccgactacggccgaacccagcggatcgtgcttctaatcgacctaaacctacttctccatctccaagacccaaccccatttctcacctctctcctccgtcaaaaccctaacctccttccctcctctctctgcgatgatgatgatctgcgatccggcgaccggcagtgggaagtctacctaatcggtgctctatttcgtctggtagagccagccggagggaaggttatagtcgatggcattgacatctctactataggacttcatgatctgaggtcaagatttggaataatacctcaagaccctactctcttcaatgggactagttatcttttcattttgaaggttcttgggaagtgtcagcttcaggaggctgttcaagaaaaagaaggcggcttagactctttagcaacatcaagtgatgacctatttgcctccttcagttgtggaagatggatcaaactggactactggagcatggggcaaaggcagttctgtttgggccgtgctcttttaaggagaagtcaggtattggtgcttgatgaagcaacagcttccatcgacaatgcaactgagatgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

206

Amino Acids

22.82

Weight (kDa)

4.62

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	3 cut(s)	11, 61, 429
AclWI	GGATC	4 cut(s)	26, 71, 183, 500
AcoI	YGGCCR	2 cut(s)	12, 49
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	386, 460
AfiI	CCNNNNNNNGG	3 cut(s)	198, 205, 254
AgsI	TTSAA	4 cut(s)	21, 352, 379, 416
AhlI	ACTAGT	1 cut(s)	359
AluBI	AGCT	2 cut(s)	400, 590
AluI	AGCT	2 cut(s)	400, 590
Alw21I	GWGCWC	2 cut(s)	229, 547
AlwI	GGATC	4 cut(s)	26, 71, 183, 500
AoxI	GGCC	3 cut(s)	12, 49, 538
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	229, 547
BccI	CCATC	4 cut(s)	105, 266, 483, 602
BceAI	ACGGC	2 cut(s)	64, 525
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	2 cut(s)	12, 430
BlsI	GCNGC	2 cut(s)	13, 431
BmgT120I	GGNCC	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 205, 254
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	2 cut(s)	504, 512
Bse8I	GATNNNNATC	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	3 cut(s)	198, 205, 254
BseMII	CTCAG	2 cut(s)	299, 600
BseNI	ACTGG	2 cut(s)	504, 512
BseRI	GAGGAG	2 cut(s)	122, 151
BseX3I	CGGCCG	2 cut(s)	12, 49
BseYI	CCCAGC	1 cut(s)	57
Bsh1285I	CGRYCG	3 cut(s)	15, 52, 199
BshFI	GGCC	3 cut(s)	14, 51, 540
BsiEI	CGRYCG	3 cut(s)	15, 52, 199
BsiHKAI	GWGCWC	2 cut(s)	229, 547
BsiSI	CCGG	4 cut(s)	27, 192, 199, 252
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	3 cut(s)	198, 205, 254
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	14, 51, 540
Bsp1286I	GDGCHC	2 cut(s)	229, 547
Bsp143I	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
BspACI	CCGC	3 cut(s)	11, 61, 429
BspANI	GGCC	3 cut(s)	14, 51, 540
BspCNI	CTCAG	2 cut(s)	300, 601
BspHI	TCATGA	1 cut(s)	301
BspPI	GGATC	4 cut(s)	26, 71, 183, 500
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	504, 512
BssAI	RCCGGY	1 cut(s)	198
BssMI	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	308, 433, 609
BstKTI	GATC	6 cut(s)	34, 66, 184, 191, 307, 495
BstMBI	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
BstMCI	CGRYCG	3 cut(s)	15, 52, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 67
BstSFI	CTRYAG	1 cut(s)	291
BstZI	CGGCCG	2 cut(s)	12, 49
BsuRI	GGCC	3 cut(s)	14, 51, 540
BtgZI	GCGATG	2 cut(s)	20, 186
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	538
CviAII	CATG	2 cut(s)	302, 514
CviJI	RGCY	9 cut(s)	14, 51, 247, 251, 400, 410, 432, 540, 590
CviKI_1	RGCY	9 cut(s)	14, 51, 247, 251, 400, 410, 432, 540, 590
DdeI	CTNAG	3 cut(s)	308, 433, 609
DpnI	GATC	6 cut(s)	33, 65, 183, 190, 306, 494
DpnII	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
EaeI	YGGCCR	2 cut(s)	12, 49
EagI	CGGCCG	2 cut(s)	12, 49
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EclXI	CGGCCG	2 cut(s)	12, 49
Eco52I	CGGCCG	2 cut(s)	12, 49
Eco57I	CTGAAG	2 cut(s)	386, 460
FaeI	CATG	2 cut(s)	305, 517
FaiI	YATR	4 cut(s)	266, 293, 303, 515
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	301, 513
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	12, 430
Fsp4HI	GCNGC	2 cut(s)	12, 430
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	12, 430
GsaI	CCCAGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	3 cut(s)	14, 51, 540
HapII	CCGG	4 cut(s)	27, 192, 199, 252
Hin1II	CATG	2 cut(s)	305, 517
HinfI	GANTC	2 cut(s)	17, 437
HpaII	CCGG	4 cut(s)	27, 192, 199, 252
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	43, 309
Hpy188III	TCNNGA	5 cut(s)	302, 315, 335, 404, 416
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	5 cut(s)	164, 253, 373, 419, 484
HpyCH4V	TGCA	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 67
HpyF3I	CTNAG	3 cut(s)	308, 433, 609
Hsp92II	CATG	2 cut(s)	305, 517
Kzo9I	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
LmnI	GCTCC	1 cut(s)	510
MaeI	CTAG	1 cut(s)	360
MalI	GATC	6 cut(s)	33, 65, 183, 190, 306, 494
MboI	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
MboII	GAAGA	2 cut(s)	340, 498
MhlI	GDGCHC	2 cut(s)	229, 547
MluCI	AATT	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	66
MseI	TTAA	2 cut(s)	551, 619
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	4 cut(s)	27, 192, 199, 252
MwoI	GCNNNNNNNGC	2 cut(s)	11, 67
NdeII	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
NlaIII	CATG	2 cut(s)	305, 517
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	13, 431
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	551, 619
SatI	GCNGC	2 cut(s)	12, 430
Sau3AI	GATC	6 cut(s)	31, 63, 181, 188, 304, 492
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	229, 547
SfcI	CTRYAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	3 cut(s)	11, 61, 429
SspMI	CTAG	1 cut(s)	360
TaqI	TCGA	3 cut(s)	78, 270, 597
TasI	AATT	1 cut(s)	22
TauI	GCSGC	2 cut(s)	14, 432
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	551, 619
Tru9I	TTAA	2 cut(s)	551, 619
TscAI	CASTG	1 cut(s)	209
TspDTI	ATGAA	3 cut(s)	290, 361, 594
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.