Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

54191930 .. 54199412

Gene Structure 7483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCCGGTGATTGCTGAAGGTTGTGAAGAAATGTCGACTTGGGAACTTAGTGAGGCAAGACCAAATGCTCCTGGATGCACCTGGTATCTACCTAATCATAGCAATTCCATTGTCATTATAGGGTTTAAAACTAATATCTGGATTGTAAATTCCAATGCGGTTTCTGAAGATGGAGAAAACTGGAGCGTCGGACAGAGGCAGCTTATTTGTCTAGCCAGAGTGCTTCTGAAGAAGAGGAAAATTCTAGTGATAGATGAGGCTACTGCATCTATAGATACAGGAACAGATAATGCAATTCAGGAGACAATAAGAAAAGAAACGAGTGAATGCACAGTTATCACCGTGGCTCACCGGATTCCTACTGTTATGGACAGTGACATGGTTCTAGTTCTTGATGAAGGTAGAATTGTGGAGTATGATTCTCCTGCTCGGCTAATGAAGGATAACTCTTCCGCATTTTCAAAGTTGGTTGCGGAATTCTTGAGGAGATCTTCCAGGAGAAAGAACAACTGCTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

173

Amino Acids

19.32

Weight (kDa)

5.48

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	46 - 89	2.7e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	3 cut(s)	158, 453, 473
AcsI	RAATTY	3 cut(s)	148, 240, 476
AcuI	CTGAAG	3 cut(s)	36, 186, 248
AgsI	TTSAA	1 cut(s)	462
AjnI	CCWGG	3 cut(s)	70, 80, 494
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	3 cut(s)	148, 240, 476
AsuHPI	GGTGA	3 cut(s)	19, 331, 341
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	3 cut(s)	72, 82, 496
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	3 cut(s)	212, 245, 386
BfmI	CTRYAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	72, 82, 496
BmrFI	CCNGG	3 cut(s)	72, 82, 496
BmsI	GCATC	2 cut(s)	65, 275
BpmI	CTGGAG	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	72, 82, 496
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	5, 352
BsmAI	GTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	488
BspACI	CCGC	3 cut(s)	158, 453, 473
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	488
Bst2UI	CCWGG	3 cut(s)	72, 82, 496
Bst4CI	ACNGT	4 cut(s)	334, 343, 364, 374
Bst6I	CTCTTC	2 cut(s)	227, 454
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	491
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	488
BstNI	CCWGG	3 cut(s)	72, 82, 496
BstSCI	CCNGG	3 cut(s)	70, 80, 494
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	4
CseI	GACGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	80
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	5 cut(s)	202, 215, 260, 347, 433
CviKI_1	RGCY	5 cut(s)	202, 215, 260, 347, 433
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	490
DpnII	GATC	1 cut(s)	488
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	227, 454
EarI	CTCTTC	2 cut(s)	227, 454
Eco57I	CTGAAG	3 cut(s)	36, 186, 248
EcoRI	GAATTC	1 cut(s)	476
EcoRII	CCWGG	3 cut(s)	70, 80, 494
FaeI	CATG	1 cut(s)	382
FaiI	YATR	6 cut(s)	99, 119, 272, 368, 380, 417
FatI	CATG	1 cut(s)	378
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	3 cut(s)	212, 245, 386
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	202
HapII	CCGG	2 cut(s)	5, 352
HgaI	GACGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	2 cut(s)	355, 419
HpaII	CCGG	2 cut(s)	5, 352
HphI	GGTGA	3 cut(s)	19, 331, 341
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	166, 191, 228
Hpy188III	TCNNGA	5 cut(s)	139, 299, 392, 481, 519
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	11, 392, 433
HpyCH4III	ACNGT	4 cut(s)	334, 343, 364, 374
HpyCH4V	TGCA	4 cut(s)	78, 266, 293, 330
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	488
LmnI	GCTCC	2 cut(s)	73, 183
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	2 cut(s)	65, 275
MabI	ACCWGGT	1 cut(s)	80
MaeI	CTAG	3 cut(s)	212, 245, 386
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	1 cut(s)	490
MboI	GATC	1 cut(s)	488
MboII	GAAGA	6 cut(s)	38, 179, 241, 244, 441, 483
MflI	RGATCY	1 cut(s)	488
MluCI	AATT	6 cut(s)	103, 148, 240, 294, 405, 476
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	46, 189, 228, 250, 477
MseI	TTAA	1 cut(s)	126
MspI	CCGG	2 cut(s)	5, 352
MspR9I	CCNGG	3 cut(s)	72, 82, 496
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	3 cut(s)	72, 82, 496
NdeII	GATC	1 cut(s)	488
NlaIII	CATG	1 cut(s)	382
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	355, 419
PfoI	TCCNGGA	2 cut(s)	70, 494
PkrI	GCNGC	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	70, 80, 494
PspGI	CCWGG	3 cut(s)	70, 80, 494
PsuI	RGATCY	1 cut(s)	488
SalI	GTCGAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	72, 82, 496
SetI	ASST	5 cut(s)	22, 83, 94, 204, 403
SexAI	ACCWGGT	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	65, 275
SfcI	CTRYAG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	6 cut(s)	103, 148, 240, 294, 405, 476
SsiI	CCGC	3 cut(s)	158, 453, 473
SspMI	CTAG	3 cut(s)	212, 245, 386
StyD4I	CCNGG	3 cut(s)	70, 80, 494
TaaI	ACNGT	4 cut(s)	334, 343, 364, 374
TaqI	TCGA	1 cut(s)	35
TasI	AATT	6 cut(s)	103, 148, 240, 294, 405, 476
TfiI	GAWTC	2 cut(s)	355, 419
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	411, 452
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	3 cut(s)	148, 240, 476
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	3 cut(s)	212, 245, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.