Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007885.1

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

9259 .. 10496

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007885.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggttgccttgacatcaggtttagcaggagtggctgcatcatatggtctaaaccttagtgtcctgcaggcttgggtgatttggaatctgtgcaatgttgaaaacaaaatgatatctgttgagagaattcttcaattcactggattacaaagtgaggcaccacttgtgatcgaagcttctaggccaaactctgaatggccatatgaaggacaaattgaatttcaaaacgtgcaagttcaatatcagcctgagggtccaatggtactgaaagggatcacttgcacattctctaaaaggatgaaaattggagtggtgggaagaacaggaagtggaaagtccactatgatccaagccttgtttagagttgttgagctctcaggagggaaaattctcattgatgaacaagacatttctaaaataggcctgcaggatttaaggtcaagtttaggcattatcccacaggaaccaactttatttcaaggaagcttgaggaataatctggatcctctgcagcaacattctgatccagaaatactggaggttgtgaagaaatgtcgacttgggaacttagtgaggcaagaccaaatgctcctggatacacctgtttctgaggatggagaaaactggagcgtcggacagaggcagcttgtctgtctagccagagtgcttctaaacaagaggaaaattctagtgctagatgaggctactgcatctgtagatacagcaacagataatgcaattcaagagacaataaggaaagagacaagcgaatgcacagttatcaccgtcgctcaccggattcctactgttatggacagtgacatggttctagttcttgatggaggtaggatattggagtatgaatctcctgctcggctgattaaggaaaactcgtctgcattttcgaagttagttgcggaattcttgaggagatcttccataagaaagaacaactgctcatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

321

Amino Acids

35.51

Weight (kDa)

5.66

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	556
AciI	CCGC	1 cut(s)	917
AclWI	GGATC	5 cut(s)	281, 340, 497, 510, 518
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	5 cut(s)	126, 218, 387, 684, 920
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	7 cut(s)	101, 134, 218, 224, 239, 479, 743
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	4 cut(s)	176, 373, 486, 646
AluI	AGCT	4 cut(s)	176, 373, 486, 646
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	740, 755
AlwI	GGATC	5 cut(s)	281, 340, 497, 510, 518
AoxI	GGCC	3 cut(s)	182, 197, 421
ApeKI	GCWGC	3 cut(s)	35, 511, 643
ApoI	RAATTY	5 cut(s)	126, 218, 387, 684, 920
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	3 cut(s)	88, 775, 785
AsuII	TTCGAA	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	249
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BalI	TGGCCA	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	22, 523, 655
BccI	CCATC	2 cut(s)	608, 833
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	740, 755
BfaI	CTAG	5 cut(s)	180, 656, 689, 695, 830
BfmI	CTRYAG	4 cut(s)	65, 425, 509, 714
BfuI	GTATCC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	932
BisI	GCNGC	3 cut(s)	36, 512, 644
BlsI	GCNGC	3 cut(s)	37, 513, 645
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	4 cut(s)	159, 255, 465, 504
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	47, 719
BpmI	CTGGAG	2 cut(s)	557, 646
Bpu14I	TTCGAA	1 cut(s)	905
BpuEI	CTTGAG	2 cut(s)	508, 946
BsaWI	WCCGGW	1 cut(s)	795
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	145, 540, 629
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	593
BseGI	GGATG	2 cut(s)	303, 619
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	240, 390, 600
BseNI	ACTGG	3 cut(s)	145, 540, 629
BseRI	GAGGAG	1 cut(s)	943
BseXI	GCAGC	3 cut(s)	22, 523, 655
BshFI	GGCC	3 cut(s)	184, 199, 423
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	796
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	740, 755
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	3 cut(s)	184, 199, 423
Bsp119I	TTCGAA	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
BspACI	CCGC	1 cut(s)	917
BspANI	GGCC	3 cut(s)	184, 199, 423
BspCNI	CTCAG	3 cut(s)	241, 389, 601
BspLI	GGNNCC	4 cut(s)	159, 255, 465, 504
BspMAI	CTGCAG	3 cut(s)	69, 429, 513
BspPI	GGATC	5 cut(s)	281, 340, 497, 510, 518
BspT104I	TTCGAA	1 cut(s)	905
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	145, 540, 629
BssMI	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	4 cut(s)	778, 787, 808, 818
BstBI	TTCGAA	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	69, 425
BstDEI	CTNAG	5 cut(s)	56, 249, 376, 568, 609
BstF5I	GGATG	2 cut(s)	303, 619
BstKTI	GATC	6 cut(s)	171, 276, 348, 505, 526, 935
BstMAI	GTCTC	2 cut(s)	740, 755
BstMBI	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	4 cut(s)	65, 425, 509, 714
BstV1I	GCAGC	3 cut(s)	22, 523, 655
BstX2I	RGATCY	2 cut(s)	502, 932
BstYI	RGATCY	2 cut(s)	502, 932
Bsu36I	CCTNAGG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	184, 199, 423
BtsCI	GGATG	2 cut(s)	303, 619
BtsIMutI	CAGTG	2 cut(s)	138, 823
Cac8I	GCNNGC	2 cut(s)	69, 425
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	1 cut(s)	823
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	5 cut(s)	56, 249, 376, 568, 609
DpnI	GATC	6 cut(s)	170, 275, 347, 504, 525, 934
DpnII	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
EaeI	YGGCCR	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	373
EcoRI	GAATTC	2 cut(s)	126, 920
EcoRII	CCWGG	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	1 cut(s)	826
FaiI	YATR	9 cut(s)	43, 45, 202, 204, 344, 812, 824, 861, 941
FatI	CATG	1 cut(s)	822
FauNDI	CATATG	2 cut(s)	43, 202
FblI	GTMKAC	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	36, 512, 644
FokI	GGATG	2 cut(s)	310, 626
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	36, 512, 644
FspBI	CTAG	5 cut(s)	180, 656, 689, 695, 830
GluI	GCNGC	3 cut(s)	36, 512, 644
GsuI	CTGGAG	2 cut(s)	557, 646
HaeIII	GGCC	3 cut(s)	184, 199, 423
HapII	CCGG	1 cut(s)	796
HgaI	GACGC	1 cut(s)	619
Hin1II	CATG	1 cut(s)	826
HincII	GTYRAC	1 cut(s)	557
HindII	GTYRAC	1 cut(s)	557
HindIII	AAGCTT	2 cut(s)	174, 484
HinfI	GANTC	3 cut(s)	85, 799, 863
HpaII	CCGG	1 cut(s)	796
HphI	GGTGA	3 cut(s)	88, 775, 785
Hpy166II	GTNNAC	2 cut(s)	339, 557
Hpy188I	TCNGA	4 cut(s)	193, 523, 610, 635
Hpy188III	TCNNGA	7 cut(s)	378, 500, 527, 743, 836, 925, 963
Hpy8I	GTNNAC	2 cut(s)	339, 557
Hpy99I	CGWCG	2 cut(s)	635, 791
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	4 cut(s)	778, 787, 808, 818
HpyCH4IV	ACGT	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	5 cut(s)	56, 249, 376, 568, 609
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	826
Kzo9I	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
LmnI	GCTCC	2 cut(s)	594, 627
Lsp1109I	GCAGC	3 cut(s)	22, 523, 655
LweI	GCATC	2 cut(s)	47, 719
MaeI	CTAG	5 cut(s)	180, 656, 689, 695, 830
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	6 cut(s)	170, 275, 347, 504, 525, 934
MboI	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
MboII	GAAGA	4 cut(s)	122, 330, 559, 927
MflI	RGATCY	2 cut(s)	502, 932
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	9 cut(s)	126, 134, 213, 218, 303, 387, 684, 738, 920
MluNI	TGGCCA	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	613
Mox20I	TGGCCA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	199
MseI	TTAA	2 cut(s)	434, 882
Msp20I	TGGCCA	1 cut(s)	199
MspI	CCGG	1 cut(s)	796
MspR9I	CCNGG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeI	CATATG	2 cut(s)	43, 202
NdeII	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
NlaIII	CATG	1 cut(s)	826
NlaIV	GGNNCC	4 cut(s)	159, 255, 465, 504
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	1 cut(s)	818
NspV	TTCGAA	1 cut(s)	905
PceI	AGGCCT	1 cut(s)	423
PctI	GAATGC	1 cut(s)	776
PfeI	GAWTC	3 cut(s)	85, 799, 863
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	3 cut(s)	37, 513, 645
Psp124BI	GAGCTC	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	4 cut(s)	159, 255, 465, 504
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	3 cut(s)	69, 429, 513
PsuI	RGATCY	2 cut(s)	502, 932
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	555
SaqAI	TTAA	2 cut(s)	434, 882
SatI	GCNGC	3 cut(s)	36, 512, 644
Sau3AI	GATC	6 cut(s)	168, 273, 345, 502, 523, 932
Sau96I	GGNCC	1 cut(s)	254
SbfI	CCTGCAGG	2 cut(s)	69, 429
ScrFI	CCNGG	1 cut(s)	593
SdaI	CCTGCAGG	2 cut(s)	69, 429
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	47, 719
SfcI	CTRYAG	4 cut(s)	65, 425, 509, 714
SfuI	TTCGAA	1 cut(s)	905
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	487, 925
SmoI	CTYRAG	2 cut(s)	487, 925
Sse8387I	CCTGCAGG	2 cut(s)	69, 429
Sse9I	AATT	9 cut(s)	126, 134, 213, 218, 303, 387, 684, 738, 920
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	917
SspMI	CTAG	5 cut(s)	180, 656, 689, 695, 830
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	4 cut(s)	778, 787, 808, 818
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	171, 556, 905
TasI	AATT	9 cut(s)	126, 134, 213, 218, 303, 387, 684, 738, 920
TfiI	GAWTC	3 cut(s)	85, 799, 863
Tru1I	TTAA	2 cut(s)	434, 882
Tru9I	TTAA	2 cut(s)	434, 882
TscAI	CASTG	2 cut(s)	145, 823
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	3 cut(s)	35, 511, 643
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	4 cut(s)	219, 314, 414, 876
TspRI	CASTG	2 cut(s)	145, 823
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	5 cut(s)	126, 218, 387, 684, 920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	556
XspI	CTAG	5 cut(s)	180, 656, 689, 695, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.