Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

65716267 .. 65716845

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60308

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGGCAAAGGCAACTGTTCTGCCTCGGGCGCGCTCTTCTAAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACTGCATCCATCGACAATGCAACTGATACGATCCTGCAGAAGACTATAAGGACTGAGTTTGAATCTTGTACAGTAATTACAGTAGCCCACAGGATACCTACTGTGATGGATTGCACAATGGTTCTTGCCATTAGTGATGGAAAAATAGTGGAGTATGATGAGCCAATGAGGTTGATGAAGAGAGAAGGCTCGCTGTTTGGGCAGCTTGTCAGGGAGTACTGGTCTCATCCCCAGTCTGCAGAATCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

108

Amino Acids

12.28

Weight (kDa)

6.27

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AclWI	GGATC	1 cut(s)	100
AfaI	GTAC	2 cut(s)	145, 293
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	33, 35
AvaI	CYCGRG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	92, 175, 206
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	110, 312
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmcAI	AGTACT	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse1I	ACTGG	2 cut(s)	299, 307
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	80, 301
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	299, 307
BsePI	GCGCGC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	33
BspMAI	CTGCAG	2 cut(s)	114, 316
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	299, 307
BssECI	CCNNGG	1 cut(s)	25
BssHII	GCGCGC	1 cut(s)	31
BssMI	GATC	1 cut(s)	105
Bst4CI	ACNGT	4 cut(s)	18, 148, 157, 178
Bst6I	CTCTTC	2 cut(s)	42, 248
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	33, 266
BstDEI	CTNAG	2 cut(s)	41, 129
BstF5I	GGATG	2 cut(s)	80, 301
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	33, 35
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 274
BstSFI	CTRYAG	2 cut(s)	110, 312
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	80, 301
Cac8I	GCNNGC	2 cut(s)	33, 266
CfoI	GCGC	2 cut(s)	33, 35
Csp6I	GTAC	2 cut(s)	144, 292
CviJI	RGCY	4 cut(s)	161, 238, 264, 280
CviKI_1	RGCY	4 cut(s)	161, 238, 264, 280
CviQI	GTAC	2 cut(s)	144, 292
DdeI	CTNAG	2 cut(s)	41, 129
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	42, 248
EarI	CTCTTC	2 cut(s)	42, 248
Eco31I	GGTCTC	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	26
FaiI	YATR	2 cut(s)	122, 231
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	2 cut(s)	67, 288
Fsp4HI	GCNGC	1 cut(s)	278
GlaI	GCGC	2 cut(s)	32, 34
GluI	GCNGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	33, 35
Hin6I	GCGC	2 cut(s)	31, 33
HinP1I	GCGC	2 cut(s)	31, 33
HinfI	GANTC	2 cut(s)	137, 317
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	4 cut(s)	18, 148, 157, 178
HpyCH4V	TGCA	5 cut(s)	80, 95, 112, 189, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 274
HpyF3I	CTNAG	2 cut(s)	41, 129
HspAI	GCGC	2 cut(s)	31, 33
Kzo9I	GATC	1 cut(s)	105
LguI	GCTCTTC	1 cut(s)	42
LpnPI	CCDG	5 cut(s)	122, 151, 271, 280, 320
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	89
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	3 cut(s)	29, 127, 265
MluCI	AATT	1 cut(s)	150
MnlI	CCTC	2 cut(s)	35, 237
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	30, 274
NdeII	GATC	1 cut(s)	105
PauI	GCGCGC	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	137, 317
PkrI	GCNGC	1 cut(s)	279
PstI	CTGCAG	2 cut(s)	114, 316
PteI	GCGCGC	1 cut(s)	31
RsaI	GTAC	2 cut(s)	145, 293
RsaNI	GTAC	2 cut(s)	144, 292
SapI	GCTCTTC	1 cut(s)	42
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	293
SetI	ASST	3 cut(s)	175, 248, 282
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	2 cut(s)	110, 312
Sse9I	AATT	1 cut(s)	150
TaaI	ACNGT	4 cut(s)	18, 148, 157, 178
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	150
TatI	WGTACW	2 cut(s)	143, 291
TfiI	GAWTC	2 cut(s)	137, 317
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	84, 266
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.