RchiOBHm_Chr2g0142731

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
60360147 .. 60360955
809 bp
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UTR
Exon/CDS
Intron
PRQ51286

Sequence Viewer

Length: 648 bp
ATGGCTTCTATCACATGGCAAGTTCTCATTGTAGCCATTCCTGCTATGGCTGCTGTTAAATATGTTCAGAATTATTATCTAGCCTCTGCAAGGGAACTAATAATAAGGATAAATGGAACAACCAAAGCTCATGCCAACAACTATGCAGCTGAGACATCACTTGGAGTCGTGACTATAAGAGCTTTTAACATGGTTGACAGGTTCTTCCAAAATTACCTAAGGCTAGTTGACACAGATGCAGGATTGTATTTTCATTCTAATGCAGCCATGGAGTGGTTAATTATAAGGACAGAAGCACTTCAGAACTTGACAATTTTCACTGCTGCTTTTCTCCTTATTTTACTTCCCAAGGGTTATGTTGCTCCAGAGCTTGTGGGGCTTTCTCTTTCTTATGCTTTAACACTAACAGCATCACAAGTTTTTATGACTCGATGGTATTGTAACTTGTCCAACTACGTCATCTCAGTCGAAAGGCTAAAACAATTCATGCAGATTTCACCAGAACCTCCAGCAATTGTAGAGGACAAAAGGCCACCATCTTCATGGCCTCAAAAGGGTAGGATAGAGGTGTTTTCTCTGAAGGTGAGATATAGTTTAATCATACACAAGAACTTCCCTTTAATGTTAAGTAATCTCTTTATCAATTGA

Protein Analysis

215

Amino Acids

24.45

Weight (kDa)

9.46

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 273
AcuI CTGAAG 2 cut(s) 284, 599
AfiI CCNNNNNNNGG 3 cut(s) 90, 273, 554
AluBI AGCT 4 cut(s) 128, 149, 182, 370
AluI AGCT 4 cut(s) 128, 149, 182, 370
Alw26I GTCTC 1 cut(s) 146
AoxI GGCC 2 cut(s) 530, 545
ApeKI GCWGC 4 cut(s) 50, 146, 263, 323
Asp700I GAANNNNTTC 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 489, 595
AxyI CCTNAGG 1 cut(s) 218
BbvI GCAGC 4 cut(s) 37, 158, 275, 310
BccI CCATC 2 cut(s) 426, 544
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 2 cut(s) 80, 224
BisI GCNGC 4 cut(s) 51, 147, 264, 324
BlsI GCNGC 4 cut(s) 52, 148, 265, 325
BmsI GCATC 2 cut(s) 226, 419
BpmI CTGGAG 2 cut(s) 348, 492
BsaJI CCNNGG 2 cut(s) 267, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 273, 554
Bse21I CCTNAGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 267, 348
BseLI CCNNNNNNNGG 3 cut(s) 90, 273, 554
BseMII CTCAG 2 cut(s) 141, 477
BseXI GCAGC 4 cut(s) 37, 158, 275, 310
BshFI GGCC 2 cut(s) 532, 547
BslI CCNNNNNNNGG 3 cut(s) 90, 273, 554
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 2 cut(s) 532, 547
Bsp19I CCATGG 1 cut(s) 267
BspANI GGCC 2 cut(s) 532, 547
BspCNI CTCAG 2 cut(s) 142, 476
BssECI CCNNGG 2 cut(s) 267, 348
BssT1I CCWWGG 2 cut(s) 267, 348
BstDEI CTNAG 3 cut(s) 150, 218, 463
BstDSI CCRYGG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 146
BstMWI GCNNNNNNNGC 3 cut(s) 41, 50, 376
BstV1I GCAGC 4 cut(s) 37, 158, 275, 310
BstXI CCANNNNNNTGG 1 cut(s) 543
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 532, 547
BtgI CCRYGG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
CviAII CATG 6 cut(s) 15, 131, 190, 268, 487, 543
DdeI CTNAG 3 cut(s) 150, 218, 463
Eco130I CCWWGG 2 cut(s) 267, 348
Eco57I CTGAAG 2 cut(s) 284, 599
Eco81I CCTNAGG 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoT14I CCWWGG 2 cut(s) 267, 348
ErhI CCWWGG 2 cut(s) 267, 348
FaeI CATG 6 cut(s) 18, 134, 193, 271, 490, 546
FatI CATG 6 cut(s) 14, 130, 189, 267, 486, 542
Fnu4HI GCNGC 4 cut(s) 51, 147, 264, 324
Fsp4HI GCNGC 4 cut(s) 51, 147, 264, 324
FspBI CTAG 2 cut(s) 80, 224
GluI GCNGC 4 cut(s) 51, 147, 264, 324
GsuI CTGGAG 2 cut(s) 348, 492
HaeIII GGCC 2 cut(s) 532, 547
Hin1II CATG 6 cut(s) 18, 134, 193, 271, 490, 546
HincII GTYRAC 2 cut(s) 196, 229
HindII GTYRAC 2 cut(s) 196, 229
HinfI GANTC 2 cut(s) 165, 427
HphI GGTGA 2 cut(s) 489, 595
Hpy166II GTNNAC 2 cut(s) 196, 229
Hpy188I TCNGA 3 cut(s) 69, 303, 579
Hpy188III TCNNGA 2 cut(s) 169, 365
Hpy8I GTNNAC 2 cut(s) 196, 229
HpyAV CCTTC 1 cut(s) 574
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 5 cut(s) 89, 146, 239, 263, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 50, 376
HpyF3I CTNAG 3 cut(s) 150, 218, 463
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 6 cut(s) 18, 134, 193, 271, 490, 546
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 6 cut(s) 54, 184, 225, 378, 513, 522
Lsp1109I GCAGC 4 cut(s) 37, 158, 275, 310
LweI GCATC 2 cut(s) 226, 419
MaeI CTAG 2 cut(s) 80, 224
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 169, 440
MboII GAAGA 2 cut(s) 196, 531
MfeI CAATTG 2 cut(s) 513, 643
MluCI AATT 7 cut(s) 70, 211, 279, 312, 482, 513, 643
MlyI GAGTC 2 cut(s) 174, 421
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 5 cut(s) 94, 514, 516, 558, 559
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 7 cut(s) 57, 186, 278, 398, 596, 620, 626
MslI CAYNNNNRTG 2 cut(s) 258, 541
MspA1I CMGCKG 1 cut(s) 149
MunI CAATTG 2 cut(s) 513, 643
MwoI GCNNNNNNNGC 3 cut(s) 41, 50, 376
NcoI CCATGG 1 cut(s) 267
NlaIII CATG 6 cut(s) 18, 134, 193, 271, 490, 546
NmuCI GTSAC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 273
PkrI GCNGC 4 cut(s) 52, 148, 265, 325
PleI GAGTC 2 cut(s) 173, 421
PpsI GAGTC 2 cut(s) 173, 421
PsiI TTATAA 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 258, 541
SaqAI TTAA 7 cut(s) 57, 186, 278, 398, 596, 620, 626
SatI GCNGC 4 cut(s) 51, 147, 264, 324
SchI GAGTC 2 cut(s) 174, 421
SfaNI GCATC 2 cut(s) 226, 419
SmiMI CAYNNNNRTG 2 cut(s) 258, 541
Sse9I AATT 7 cut(s) 70, 211, 279, 312, 482, 513, 643
SspMI CTAG 2 cut(s) 80, 224
StyI CCWWGG 2 cut(s) 267, 348
TaiI ACGT 1 cut(s) 459
TaqI TCGA 2 cut(s) 430, 468
TasI AATT 7 cut(s) 70, 211, 279, 312, 482, 513, 643
Tru1I TTAA 7 cut(s) 57, 186, 278, 398, 596, 620, 626
Tru9I TTAA 7 cut(s) 57, 186, 278, 398, 596, 620, 626
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 4 cut(s) 50, 146, 263, 323
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 3 cut(s) 242, 475, 531
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 2 cut(s) 43, 540
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 80, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.