Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

63499952 .. 63503973

Gene Structure 4022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG427400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTTCTATCACATGGCAAGTTCTCATTGTAGCCATTCCTGCCATGGCTGCTGTTAAATATGTTCAGAATTATTATCTAGCCTCTGCAAGGGAACTAATAATAAGGATAAATGGAACAACCAAAGCTCATGTCATCAACTATGCAGCTGAGACATCACTTGGAGTCGTGACTATAAGAGCTTTTAACATGGTTGACAGGACAAAAGCACTTCAGAACTTGACAATTTTCACTGCTGCTTTTCTCCTTATTTTACTTCCCAAGGGTTATGTTGCTCCAGGGCTTGTGGGGCTTTCTCTTTCTTATGCTTTAACACTAACAGCATCACAAGTTTTTATGACTCGATGGTATTGTAACTTGTCAAACTACGTCATCTCAGTCGAAAGGATAAAACAATTCATGCAGATTTCACCAGAACCTCCAGCAATTGTAGAGGACAAAAGGCCACCATCTTCATGGCCTCAAAAGGGTAGGATAAAGGTGTTTTCTCTGAAGGCTCTAGAGAAGTGTCAGCTCAAGCCAACAGTTATCAGCCTACCTAATCAACTAGATTCGTCCGTAAGTGATGAAGGAGAAAATTGGAGCGCCGGACAGCGCCAGCTGTTTTGCCTTGGAAGGGTGATACTCAAGAGGAACAGAATTCTAGTTCTAGATGAGGCAACTGCTTCCATTGATTCTGCAACAGATGCCATTGTACAAAGAATTGTAAGGCAAAAATTTTCAGAATGCACAGTTGTAACTGTAGCTAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

251

Amino Acids

27.8

Weight (kDa)

9.58

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	639, 716
AcuI	CTGAAG	2 cut(s)	197, 512
AfaI	GTAC	1 cut(s)	696
AfiI	CCNNNNNNNGG	3 cut(s)	90, 467, 616
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	7 cut(s)	128, 149, 182, 514, 601, 746, 750
AluI	AGCT	7 cut(s)	128, 149, 182, 514, 601, 746, 750
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	443, 458
ApeKI	GCWGC	3 cut(s)	50, 146, 236
ApoI	RAATTY	2 cut(s)	639, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspLEI	GCGC	2 cut(s)	587, 597
AsuHPI	GGTGA	2 cut(s)	402, 631
AsuNHI	GCTAGC	1 cut(s)	746
BbvI	GCAGC	3 cut(s)	37, 158, 223
BccI	CCATC	2 cut(s)	339, 457
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	6 cut(s)	80, 500, 548, 644, 650, 747
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	2 cut(s)	588, 598
BisI	GCNGC	3 cut(s)	51, 147, 237
BlsI	GCNGC	3 cut(s)	52, 148, 238
Bme1390I	CCNGG	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	332, 676
BmtI	GCTAGC	1 cut(s)	750
BpmI	CTGGAG	2 cut(s)	261, 405
BpuEI	CTTGAG	2 cut(s)	500, 611
BsaJI	CCNNGG	4 cut(s)	45, 261, 278, 610
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 467, 616
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	45, 261, 278, 610
BseLI	CCNNNNNNNGG	3 cut(s)	90, 467, 616
BseMII	CTCAG	2 cut(s)	141, 390
BseXI	GCAGC	3 cut(s)	37, 158, 223
BshFI	GGCC	2 cut(s)	445, 460
BsiSI	CCGG	1 cut(s)	588
BslI	CCNNNNNNNGG	3 cut(s)	90, 467, 616
BsmAI	GTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	2 cut(s)	445, 460
Bsp1407I	TGTACA	1 cut(s)	694
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	445, 460
BspCNI	CTCAG	2 cut(s)	142, 389
BspOI	GCTAGC	1 cut(s)	750
BsrGI	TGTACA	1 cut(s)	694
BssECI	CCNNGG	4 cut(s)	45, 261, 278, 610
BssT1I	CCWWGG	3 cut(s)	45, 261, 610
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	526, 733, 742
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	694
BstC8I	GCNNGC	2 cut(s)	599, 748
BstDEI	CTNAG	2 cut(s)	150, 376
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstH2I	RGCGCY	2 cut(s)	588, 598
BstHHI	GCGC	2 cut(s)	587, 597
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 50, 289, 686
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	741
BstV1I	GCAGC	3 cut(s)	37, 158, 223
BstXI	CCANNNNNNTGG	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	445, 460
BtgI	CCRYGG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	599, 748
CfoI	GCGC	2 cut(s)	587, 597
Csp6I	GTAC	1 cut(s)	695
CviAII	CATG	6 cut(s)	15, 46, 131, 190, 400, 456
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	2 cut(s)	150, 376
Eco130I	CCWWGG	3 cut(s)	45, 261, 610
Eco57I	CTGAAG	2 cut(s)	197, 512
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	3 cut(s)	45, 261, 610
ErhI	CCWWGG	3 cut(s)	45, 261, 610
FaeI	CATG	6 cut(s)	18, 49, 134, 193, 403, 459
FatI	CATG	6 cut(s)	14, 45, 130, 189, 399, 455
Fnu4HI	GCNGC	3 cut(s)	51, 147, 237
Fsp4HI	GCNGC	3 cut(s)	51, 147, 237
FspBI	CTAG	6 cut(s)	80, 500, 548, 644, 650, 747
GlaI	GCGC	2 cut(s)	586, 596
GluI	GCNGC	3 cut(s)	51, 147, 237
GsuI	CTGGAG	2 cut(s)	261, 405
HaeII	RGCGCY	2 cut(s)	588, 598
HaeIII	GGCC	2 cut(s)	445, 460
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	2 cut(s)	587, 597
Hin1II	CATG	6 cut(s)	18, 49, 134, 193, 403, 459
Hin6I	GCGC	2 cut(s)	585, 595
HinP1I	GCGC	2 cut(s)	585, 595
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	165, 340, 551, 674
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	2 cut(s)	402, 631
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	4 cut(s)	69, 216, 492, 724
Hpy188III	TCNNGA	4 cut(s)	169, 500, 628, 650
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	487, 563, 609
HpyCH4III	ACNGT	3 cut(s)	526, 733, 742
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	89, 146, 403, 680, 729
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 50, 289, 686
HpyF3I	CTNAG	2 cut(s)	150, 376
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	6 cut(s)	18, 49, 134, 193, 403, 459
HspAI	GCGC	2 cut(s)	585, 595
LmnI	GCTCC	2 cut(s)	280, 582
LpnPI	CCDG	8 cut(s)	54, 184, 264, 291, 426, 435, 601, 611
Lsp1109I	GCAGC	3 cut(s)	37, 158, 223
LweI	GCATC	2 cut(s)	332, 676
MaeI	CTAG	6 cut(s)	80, 500, 548, 644, 650, 747
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	169, 353, 736
MboII	GAAGA	1 cut(s)	444
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	8 cut(s)	70, 225, 395, 426, 577, 639, 702, 716
MlyI	GAGTC	2 cut(s)	174, 334
MnlI	CCTC	6 cut(s)	94, 427, 429, 471, 624, 649
MseI	TTAA	3 cut(s)	57, 186, 311
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	2 cut(s)	149, 601
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	41, 50, 289, 686
NcoI	CCATGG	1 cut(s)	45
NheI	GCTAGC	1 cut(s)	746
NlaIII	CATG	6 cut(s)	18, 49, 134, 193, 403, 459
NmuCI	GTSAC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	551, 674
PkrI	GCNGC	3 cut(s)	52, 148, 238
PleI	GAGTC	2 cut(s)	173, 334
PpsI	GAGTC	2 cut(s)	173, 334
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PvuII	CAGCTG	2 cut(s)	149, 601
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
RseI	CAYNNNNRTG	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	57, 186, 311
SatI	GCNGC	3 cut(s)	51, 147, 237
SchI	GAGTC	2 cut(s)	174, 334
ScrFI	CCNGG	1 cut(s)	279
SfaNI	GCATC	2 cut(s)	332, 676
SfcI	CTRYAG	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	2 cut(s)	515, 626
SmoI	CTYRAG	2 cut(s)	515, 626
Sse9I	AATT	8 cut(s)	70, 225, 395, 426, 577, 639, 702, 716
SspMI	CTAG	6 cut(s)	80, 500, 548, 644, 650, 747
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	3 cut(s)	45, 261, 610
TaaI	ACNGT	3 cut(s)	526, 733, 742
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	343, 381
TasI	AATT	8 cut(s)	70, 225, 395, 426, 577, 639, 702, 716
TatI	WGTACW	1 cut(s)	694
TfiI	GAWTC	2 cut(s)	551, 674
Tru1I	TTAA	3 cut(s)	57, 186, 311
Tru9I	TTAA	3 cut(s)	57, 186, 311
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	50, 146, 236
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	388, 444, 582
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	88
XapI	RAATTY	2 cut(s)	639, 716
XbaI	TCTAGA	2 cut(s)	499, 649
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 453
XspI	CTAG	6 cut(s)	80, 500, 548, 644, 650, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.