Rroxscaffold_4G00310980

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
33152982 .. 33161227
8246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310980.1

Sequence Viewer

Length: 3951 bp
ATGCTAGTGGTATCATGGGCACTATCAACAGTTGCAGTTTACCGGCTTGTGAATATCAAATCCATCAAGTTCCCTTGGCTATTAAGAGCATGGTGGCTTTGCAGCTTTATCTTGTCCATCATCTCTGTGGCTGTTGATACATATTTCCAAATCACATACCATGGCCAGCTTCGATTACAAGATTATTCTGACTTCCTGAGTCTCCTTGCATCCACCTGCCTGTTTGGTATTTCAATACAAGGGAAGACAGGACTAACCTTCACCGTCCCAGATAGCATCACCGAACCACTTCTCAGTGGAAAAGGTGATAAACATACAGAAGGAAGACAACAATCTCCATATGGAAAAGCTACTCTTCTCCAACTCATCACATTCTCTTGGCTCAACCCCTTGTTTTCTCTTGGAATCAAGAAACCCCTAGACCAGGAAGAAGTCCCAGCTCTTGACATCAAAGACTCAGCTGAATATCTGTCTCACTCATATGATGAGAGACTAAAACATGTTAAGGAGAGAGATGGAACCACAAACCCAGAAATCTACAAGACAATTTATTTATTTATCAGGAAGAAAGCAGCAATTAATGCTATGTTTGCTGTAATATATGCTGTAGCATCATATGTTGGACCATATCTCATTAATGACTTCGTAAACTTTTTGACAGAGAAGAAAACTCGAAGCTCAGGGAGTGGCTACATTCTTGCAGTTGCCTTTCTAGGAGCCAAGATGGTTGAAACGATTGCACAGAGGCAATGGATATTTGGGGCAAGACAGCTAGGCCTTCGCCTTAGAGCTGCTCTAATATCTCAAATTTTCAAGAAAGGCTTACATCTATCAAGCCAATCCCACCACAGCCACAACAGTGGAGAGGTCATCAACTATATGAGTGTAGATATCCAAAGAATCACAGACTTCATTTGGTACTTAAACATAATATGGATGATGCCTATTCAAATTTCCTTGGCAATCTATATCCTTCATACGAATCTAGGCATGGGTTCCTTCGGCGCATTAGTAGCAACTTTTGGAGTACTGCTTTGCAATATCCCAATGACTAATCTTCAGAAAAGATACCAGTCTAGGATCATGGAAGCCAAGGACAACAGGATGAAAGCCACTACAGAGATTCTTCGAAGCATGAAGACCATCAAACTTCAGGCATGGGACAGTCAGTTCCTTCACAAGTTAGAAAGCTTGAGGAAAATAGAGTACGACTGGCTATGGAAGTCACTAAGACTGTTTGCAATTGGCTCTACTGTCTTTTGGGGAGCACCCTCATTTATCTCAGTGGTGACTTTCTGGGCTTGTATGGTGATGGGTATAGACCTCACAGCAGGGAGAGTTTTATCAGCATTAGCCACCTTCAGAATGTTACAAGATCCTATATTTAATCTACCTGATGTCCTCAACGTGATTGCACAGGGAAAAGTTTCCGCAGATAGAGTAGCTTCATATCTCATGGAAGAAGAAATTCAGCAGGATGCCATTGAGCATATTCCAAAAGATCAGATGGAAAACTCCATTGAGATAGAAAATGGAAAATTTGGCTGGAATATTGAGTCAAGCAGCACAACTCTTGATGGAATCCACTTAAAAGTGAAGAGGGGTATGAAAGTGGCAATTTGTGGGACTGTAGGATCAGGGAAGTCTAGCCTTCTGTCATGCATTCTTGGAGAAATTCAAAAGTTGTCAGGGACAGTGAAAATCAGCGGTACAAAGGCTTATGTTCCTCAATCTCCATGGATTTTGACAGGAAATATCAGGGAGAATATCCTGTTCGGAAATGCATTCGACAAGGTCAAGTATGACAAAACCGTTAAAGCATGTGCATTGGAAAAGGATCTTGAGCTGTTCTCCTCTGGAGATCTAACAGAAATAGGAGAAAGAGGAATTAATATGAGCGGAGGACAGAAACAAAGGATACAAATTGCTCGTGCAGTTTACCAGGATGCTGATATATATCTACTAGATGACCCTTTCAGTGCTGTTGATGCTCACACAGGCACTCAACTCTTTGAGGACTGCATGATGGGAATTCTCAAAGAGAAGACTACACTTTATGTCACCCACCAAGTTGAGTTTCTCCCAGCAGCCGACTTAATTCTGGTGATGCAAGATGGAAAAATTGCACAAGCTGGAAGCTTTGAAGAGCTTCTAAAACAAAATATAGGCTTTGAAGTTTTGGTTGGTGCTCATAGCCGAGCTCTAGAGTCAATCCTAACAGTAGCTAGTAACTATTGGATGGCATGGGCTTCACCTCCTACAATTGAGACGGAGCCAAAATTTGGGATTAAGTTCATATTACTTACTTATATACTACTCGCTATTGGAAGTTCACTTTGTGTGCTATTGCGAGCATCACTAATAGCAGTAGCAGGACTTGCAACAGCACAAAAGTTCTTCACAGATATGCTACATAGCATACTCCGAGCACCAATGGCATTTTTCGATTCAACCCCAACTGGAAGAATCTTAAACCGAGCATCAACTGATCAAAGTGTGTTAGATTTGGAAATGGCAATCAAATTAGTCTGCATATGGTATCAGCAATATTACATACCAACAGCAAGAGAACTGGCGCGGCTATCAGGCATACAAAGGGCTCCGATCCTCCATCACTTTGCAGAATCTCTGGCAGGAGCAGCAACAATCCGTGCTTTTGATCAACAGGACCGCTTTAGTAATGCAAACCTCAGTCTTATTGACAACCACTCAAGGCCATGGTTTCATAGTGTGTCAGCAATGGAATGGCTTTCTTTCAGACTAAATCTACTCTCAAACTTTGTGTTTGGCTTCTCATTAGTTCTATTGGTGACTCTACCTGAAGGAGTTATTAATCCAAGCATTGCAGGGTTGGCGGTAACATATGGAATAAATCTGAATGTTTTGCAAGCTTCAATTATATGGAACATATGCAATGCAGAAAATAAGATGATCTCAGTTGAAAGAATTCTGCAGTACTCAAATCTAACAAGTGAAGCACCTCTTGTAATTGAAGAATACAAGCCACCAATCAACTGGCCACAAGTTGGGACAATTTGTTTCAAAAATCTGCAGATTCGTTATGCTGAACATCTCCCATCTGTTCTGAAAAACATTAACTGTACATTTCCGGGAAAAAACAAAGTTGGTGTTGTAGGAAGGACAGGAAGTGGGAAATCAACCCTCATACAGGCTCTTTTCAGGATAGTTGAACCTAGAGAAGGAAGCATTTTAATTGATGATCTAGACATTTGCAAAATTGGCCTTCATGACTTAAGATCAAGACTCAGCATCATTCCACAAGAACCAACAATGTTTGAAGGAACAGTTAGAGGAAACCTCGACCCACTAGAGCAATACTCTGACAGTGATGTTTGGGAGGCTTTAGATAAATGTCAGCTAGGTGATCTAGTGCGTGCAAAGAAAGAGAAGTTGGAAGCCTCAGTGACGGAAAATGGAGAAAACTGGAGTGCGGGTCAAAGACAGTTACTTTGCCTTGGAAGAGCATTGCTTAAGAAAAGCAGAATTCTGGTATTGGATGAAGCAACAGCATCAGTTGATTCTGCAACTGATGGGGTGATACAGAAGATCATCCGCCAAGAATTCAAGGACCGAACAGTTGTCACAGTAGCTCATAGAATCCACACAGTTATAGACAGTGATCTCGTTTTGGTCCTCAGTGACGGACTAGTGGCGGTGTGGCTATGGCGATTTTGGGCGGATCGTTGTGGCGACGTGGCTTTGGTGGTCTGGGCAAATCGTTATGGCGGAGTGGCTATGGAGGTTATGGGCGGATTGTTTCGGCGGCGTGGCTTGGTGGTTCGGGGAGTTCATTATGGTGGTTGCGACGGCTTAGATCGGGACGGCGTGGTCGACGGCGCCGCATGCACCGAAACTATGCATGCGGCTATTGGTGTTTGGGCTTGGGTCAACCCTAACCTACTGGGCCTTGAGTTGGGCCCCTTCTCTTGA

Protein Analysis

1316

Amino Acids

146.74

Weight (kDa)

7.54

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 194 - 460 2.8e-30 ABC transporter transmembrane region
ABC_tran PF00005 525 - 659 1.1e-20 ABC transporter
ABC_membrane PF00664 745 - 834 3.9e-13 ABC transporter transmembrane region
ABC_membrane PF00664 840 - 939 3.6e-08 ABC transporter transmembrane region
ABC_tran PF00005 1029 - 1177 5.6e-26 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
AasI GACNNNNNNGTC 1 cut(s) 3848
Acc36I ACCTGC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 3857
AccB7I CCANNNNNTGG 2 cut(s) 2282, 3026
AccBSI CCGCTC 1 cut(s) 1899
AccI GTMKAC 1 cut(s) 3852
AccII CGCG 1 cut(s) 2578
AclWI GGATC 6 cut(s) 1088, 1370, 1642, 1845, 2599, 3708
AcoI YGGCCR 2 cut(s) 163, 3017
AcuI CTGAAG 4 cut(s) 1043, 1136, 1345, 2841
AcyI GRCGYC 1 cut(s) 3858
AdeI CACNNNGTG 1 cut(s) 2339
AfaI GTAC 6 cut(s) 920, 1029, 1208, 1711, 2957, 3103
AfiI CCNNNNNNNGG 6 cut(s) 424, 2282, 3026, 3169, 3200, 3934
AflII CTTAAG 2 cut(s) 3253, 3491
AflIII ACRYGT 1 cut(s) 499
AhlI ACTAGT 1 cut(s) 3667
AjiI CACGTC 1 cut(s) 3715
AjnI CCWGG 2 cut(s) 423, 1941
AjuI GAANNNNNNNTTGG 6 cut(s) 2061, 2093, 2166, 2198, 3395, 3427
AleI CACNNNNGTG 1 cut(s) 858
AloI GAACNNNNNNTCC 2 cut(s) 1154, 1186
Alw21I GWGCWC 4 cut(s) 1270, 2191, 2203, 2431
Alw26I GTCTC 4 cut(s) 206, 477, 484, 2261
AlwI GGATC 6 cut(s) 1088, 1370, 1642, 1845, 2599, 3708
AoxI GGCC 7 cut(s) 163, 775, 2714, 3017, 3241, 3925, 3937
ApaI GGGCCC 1 cut(s) 3941
ApeKI GCWGC 6 cut(s) 102, 572, 791, 1563, 2087, 2639
ArsI GACNNNNNNTTYG 2 cut(s) 3453, 3485
AseI ATTAAT 4 cut(s) 579, 636, 1890, 2832
Asp700I GAANNNNTTC 5 cut(s) 288, 1426, 1467, 2148, 2946
AspLEI GCGC 3 cut(s) 1007, 2578, 3860
AspS9I GGNCC 7 cut(s) 623, 2668, 3589, 3652, 3925, 3937, 3938
AsuC2I CCSGG 1 cut(s) 3111
AsuII TTCGAA 1 cut(s) 1129
AvaII GGWCC 4 cut(s) 623, 2668, 3589, 3652
BaeGI GKGCMC 2 cut(s) 22, 3941
BalI TGGCCA 2 cut(s) 165, 3019
BanI GGYRCC 1 cut(s) 3857
BanII GRGCYC 3 cut(s) 2203, 2602, 3941
BauI CACGAG 1 cut(s) 1929
BbsI GAAGAC 4 cut(s) 251, 331, 1145, 2051
Bbv12I GWGCWC 4 cut(s) 1270, 2191, 2203, 2431
BbvI GCAGC 6 cut(s) 114, 584, 778, 1575, 2099, 2651
BceAI ACGGC 3 cut(s) 3844, 3859, 3871
BciT130I CCWGG 2 cut(s) 425, 1943
BciVI GTATCC 1 cut(s) 1911
BclI TGATCA 2 cut(s) 2488, 2659
BcnI CCSGG 1 cut(s) 3111
BcoDI GTCTC 4 cut(s) 206, 477, 484, 2261
BcuI ACTAGT 1 cut(s) 3667
BfmI CTRYAG 5 cut(s) 606, 1116, 1629, 2951, 3050
BfoI RGCGCY 1 cut(s) 3861
BfrI CTTAAG 2 cut(s) 3253, 3491
BfuAI ACCTGC 1 cut(s) 224
BfuI GTATCC 1 cut(s) 1911
BglII AGATCT 1 cut(s) 1861
BmcAI AGTACT 2 cut(s) 1029, 2957
Bme1390I CCNGG 3 cut(s) 425, 1943, 3111
Bme18I GGWCC 4 cut(s) 623, 2668, 3589, 3652
BmgBI CACGTC 1 cut(s) 3715
BmgT120I GGNCC 7 cut(s) 623, 2668, 3589, 3652, 3925, 3937, 3938
BmiI GGNNCC 8 cut(s) 520, 718, 997, 2274, 2601, 3859, 3939, 3940
BmrFI CCNGG 3 cut(s) 425, 1943, 3111
BmrI ACTGGG 1 cut(s) 3932
BmuI ACTGGG 1 cut(s) 3932
BpiI GAAGAC 4 cut(s) 251, 331, 1145, 2051
BplI GAGNNNNNCTC 6 cut(s) 1835, 1867, 3303, 3335, 3323, 3355
BpmI CTGGAG 2 cut(s) 1878, 3466
Bpu10I CCTNAGC 1 cut(s) 679
Bpu14I TTCGAA 1 cut(s) 1129
BpuEI CTTGAG 4 cut(s) 1213, 1862, 2695, 3950
BpuMI CCSGG 1 cut(s) 3111
BsaBI GATNNNNATC 1 cut(s) 1956
BsaHI GRCGYC 1 cut(s) 3858
BsaJI CCNNGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
BsaXI ACNNNNNCTCC 2 cut(s) 3439, 3469
Bsc4I CCNNNNNNNGG 6 cut(s) 424, 2282, 3026, 3169, 3200, 3934
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 7 cut(s) 1072, 1217, 2464, 2577, 3020, 3449, 3927
Bse3DI GCAATG 5 cut(s) 755, 2745, 2841, 2920, 3485
Bse8I GATNNNNATC 1 cut(s) 1956
BseBI CCWGG 2 cut(s) 425, 1943
BseDI CCNNGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
BseGI GGATG 8 cut(s) 209, 942, 1110, 1483, 1951, 2244, 3523, 3570
BseJI GATNNNNATC 1 cut(s) 1956
BseLI CCNNNNNNNGG 6 cut(s) 424, 2282, 3026, 3169, 3200, 3934
BseMI GCAATG 5 cut(s) 755, 2745, 2841, 2920, 3485
BseNI ACTGG 7 cut(s) 1072, 1217, 2464, 2577, 3020, 3449, 3927
BseRI GAGGAG 1 cut(s) 1843
BseSI GKGCMC 2 cut(s) 22, 3941
BseXI GCAGC 6 cut(s) 114, 584, 778, 1575, 2099, 2651
BseYI CCCAGC 2 cut(s) 436, 2083
BsgI GTGCAG 1 cut(s) 1953
Bsh1236I CGCG 1 cut(s) 2578
BshFI GGCC 7 cut(s) 165, 777, 2716, 3019, 3243, 3927, 3939
BshNI GGYRCC 1 cut(s) 3857
BsiHKAI GWGCWC 4 cut(s) 1270, 2191, 2203, 2431
BsiSI CCGG 2 cut(s) 43, 3110
BslFI GGGAC 7 cut(s) 251, 419, 1175, 1639, 1705, 3043, 3854
BslI CCNNNNNNNGG 6 cut(s) 424, 2282, 3026, 3169, 3200, 3934
BsmAI GTCTC 4 cut(s) 206, 477, 484, 2261
BsmBI CGTCTC 1 cut(s) 2261
BsmFI GGGAC 7 cut(s) 251, 419, 1175, 1639, 1705, 3043, 3854
BsmI GAATGC 2 cut(s) 1662, 1784
BsnI GGCC 7 cut(s) 165, 777, 2716, 3019, 3243, 3927, 3939
Bsp119I TTCGAA 1 cut(s) 1129
Bsp120I GGGCCC 1 cut(s) 3937
Bsp1286I GDGCHC 7 cut(s) 22, 1270, 2191, 2203, 2431, 2602, 3941
Bsp1407I TGTACA 1 cut(s) 3101
Bsp19I CCATGG 3 cut(s) 160, 1736, 2717
BspANI GGCC 7 cut(s) 165, 777, 2716, 3019, 3243, 3927, 3939
BspFNI CGCG 1 cut(s) 2578
BspHI TCATGA 1 cut(s) 3247
BspLI GGNNCC 8 cut(s) 520, 718, 997, 2274, 2601, 3859, 3939, 3940
BspMAI CTGCAG 2 cut(s) 2955, 3054
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 6 cut(s) 1088, 1370, 1642, 1845, 2599, 3708
BspQI GCTCTTC 2 cut(s) 2139, 3475
BspT104I TTCGAA 1 cut(s) 1129
BspT107I GGYRCC 1 cut(s) 3857
BspTI CTTAAG 2 cut(s) 3253, 3491
BsrBI CCGCTC 1 cut(s) 1899
BsrDI GCAATG 5 cut(s) 755, 2745, 2841, 2920, 3485
BsrFI RCCGGY 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 3101
BsrI ACTGG 7 cut(s) 1072, 1217, 2464, 2577, 3020, 3449, 3927
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
BssNI GRCGYC 1 cut(s) 3858
BssSI CACGAG 1 cut(s) 1929
BssT1I CCWWGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
Bst2BI CACGAG 1 cut(s) 1929
Bst2UI CCWGG 2 cut(s) 425, 1943
Bst6I CTCTTC 4 cut(s) 360, 1592, 2139, 3475
BstACI GRCGYC 1 cut(s) 3858
BstAFI CTTAAG 2 cut(s) 3253, 3491
BstAPI GCANNNNNTGC 2 cut(s) 581, 2378
BstAUI TGTACA 1 cut(s) 3101
BstBI TTCGAA 1 cut(s) 1129
BstC8I GCNNGC 6 cut(s) 167, 2352, 2889, 3396, 3865, 3882
BstDSI CCRYGG 3 cut(s) 160, 1736, 2717
BstENI CCTNNNNNAGG 3 cut(s) 422, 3167, 3198
BstF5I GGATG 8 cut(s) 209, 942, 1110, 1483, 1951, 2244, 3523, 3570
BstFNI CGCG 1 cut(s) 2578
BstH2I RGCGCY 1 cut(s) 3861
BstHHI GCGC 3 cut(s) 1007, 2578, 3860
BstMAI GTCTC 4 cut(s) 206, 477, 484, 2261
BstNI CCWGG 2 cut(s) 425, 1943
BstNSI RCATGY 4 cut(s) 503, 1824, 3867, 3884
BstSCI CCNGG 3 cut(s) 423, 1941, 3109
BstSFI CTRYAG 5 cut(s) 606, 1116, 1629, 2951, 3050
BstSLI GKGCMC 2 cut(s) 22, 3941
BstUI CGCG 1 cut(s) 2578
BstV1I GCAGC 6 cut(s) 114, 584, 778, 1575, 2099, 2651
BstV2I GAAGAC 4 cut(s) 251, 331, 1145, 2051
BstX2I RGATCY 3 cut(s) 1375, 1837, 1861
BstXI CCANNNNNNTGG 2 cut(s) 860, 3015
BstYI RGATCY 3 cut(s) 1375, 1837, 1861
BsuI GTATCC 1 cut(s) 1911
BsuRI GGCC 7 cut(s) 165, 777, 2716, 3019, 3243, 3927, 3939
BtgI CCRYGG 3 cut(s) 160, 1736, 2717
BtrI CACGTC 1 cut(s) 3715
BtsCI GGATG 8 cut(s) 209, 942, 1110, 1483, 1951, 2244, 3523, 3570
BtsIMutI CAGTG 9 cut(s) 301, 865, 1290, 1701, 1984, 3352, 3429, 3643, 3664
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 6 cut(s) 167, 2352, 2889, 3396, 3865, 3882
CciI TCATGA 1 cut(s) 3247
CfoI GCGC 3 cut(s) 1007, 2578, 3860
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 7 cut(s) 623, 2668, 3589, 3652, 3925, 3937, 3938
Csp6I GTAC 6 cut(s) 919, 1028, 1207, 1710, 2956, 3102
CviQI GTAC 6 cut(s) 919, 1028, 1207, 1710, 2956, 3102
DinI GGCGCC 1 cut(s) 3859
DraIII CACNNNGTG 1 cut(s) 2339
DrdI GACNNNNNNGTC 1 cut(s) 3848
DseDI GACNNNNNNGTC 1 cut(s) 3848
EaeI YGGCCR 2 cut(s) 163, 3017
Eam1104I CTCTTC 4 cut(s) 360, 1592, 2139, 3475
EarI CTCTTC 4 cut(s) 360, 1592, 2139, 3475
EciI GGCGGA 4 cut(s) 3563, 3713, 3762, 3786
Ecl136II GAGCTC 1 cut(s) 2201
Eco130I CCWWGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
Eco147I AGGCCT 1 cut(s) 777
Eco24I GRGCYC 3 cut(s) 2203, 2602, 3941
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 4 cut(s) 623, 2668, 3589, 3652
Eco53kI GAGCTC 1 cut(s) 2201
Eco57I CTGAAG 4 cut(s) 1043, 1136, 1345, 2841
EcoICRI GAGCTC 1 cut(s) 2201
EcoNI CCTNNNNNAGG 3 cut(s) 422, 3167, 3198
EcoO109I RGGNCCY 1 cut(s) 3938
EcoRI GAATTC 4 cut(s) 2031, 2946, 3504, 3581
EcoRII CCWGG 2 cut(s) 423, 1941
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
EcoT22I ATGCAT 3 cut(s) 1664, 1786, 3882
EcoT38I GRGCYC 3 cut(s) 2203, 2602, 3941
EgeI GGCGCC 1 cut(s) 3859
EheI GGCGCC 1 cut(s) 3859
ErhI CCWWGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
Esp3I CGTCTC 1 cut(s) 2261
FalI AAGNNNNNCTT 6 cut(s) 339, 371, 806, 838, 2967, 2999
FaqI GGGAC 7 cut(s) 251, 419, 1175, 1639, 1705, 3043, 3854
FauI CCCGC 1 cut(s) 3445
FauNDI CATATG 6 cut(s) 340, 481, 616, 2534, 2863, 2909
FbaI TGATCA 2 cut(s) 2488, 2659
FblI GTMKAC 1 cut(s) 3852
FokI GGATG 8 cut(s) 196, 949, 1117, 1490, 1958, 2251, 3530, 3557
FriOI GRGCYC 3 cut(s) 2203, 2602, 3941
GlaI GCGC 3 cut(s) 1006, 2577, 3859
GsaI CCCAGC 2 cut(s) 440, 2087
GsuI CTGGAG 2 cut(s) 1878, 3466
HaeII RGCGCY 1 cut(s) 3861
HaeIII GGCC 7 cut(s) 165, 777, 2716, 3019, 3243, 3927, 3939
HapII CCGG 2 cut(s) 43, 3110
HhaI GCGC 3 cut(s) 1007, 2578, 3860
Hin1I GRCGYC 1 cut(s) 3858
Hin6I GCGC 3 cut(s) 1005, 2576, 3858
HinP1I GCGC 3 cut(s) 1005, 2576, 3858
HincII GTYRAC 2 cut(s) 3853, 3910
HindII GTYRAC 2 cut(s) 3853, 3910
HindIII AAGCTT 3 cut(s) 1189, 2137, 2889
HpaII CCGG 2 cut(s) 43, 3110
Hpy166II GTNNAC 6 cut(s) 40, 649, 1939, 2333, 3853, 3910
Hpy8I GTNNAC 6 cut(s) 40, 649, 1939, 2333, 3853, 3910
Hpy99I CGWCG 3 cut(s) 3716, 3830, 3857
HpyCH4IV ACGT 2 cut(s) 1407, 3714
HpySE526I ACGT 2 cut(s) 1407, 3714
Hsp92I GRCGYC 1 cut(s) 3858
HspAI GCGC 3 cut(s) 1005, 2576, 3858
KasI GGCGCC 1 cut(s) 3857
Ksp22I TGATCA 2 cut(s) 2488, 2659
LguI GCTCTTC 2 cut(s) 2139, 3475
LmnI GCTCC 5 cut(s) 716, 1265, 2272, 2605, 2636
Lsp1109I GCAGC 6 cut(s) 114, 584, 778, 1575, 2099, 2651
MaeII ACGT 2 cut(s) 1407, 3714
MbiI CCGCTC 1 cut(s) 1899
MfeI CAATTG 2 cut(s) 1242, 2262
MflI RGATCY 3 cut(s) 1375, 1837, 1861
MhlI GDGCHC 7 cut(s) 22, 1270, 2191, 2203, 2431, 2602, 3941
MlsI TGGCCA 2 cut(s) 165, 3019
MluNI TGGCCA 2 cut(s) 165, 3019
Mly113I GGCGCC 1 cut(s) 3858
MlyI GAGTC 6 cut(s) 208, 449, 1565, 2216, 2806, 3258
MmeI TCCRAC 3 cut(s) 385, 601, 3393
Mox20I TGGCCA 2 cut(s) 165, 3019
Mph1103I ATGCAT 3 cut(s) 1664, 1786, 3882
MroXI GAANNNNTTC 5 cut(s) 288, 1426, 1467, 2148, 2946
MscI TGGCCA 2 cut(s) 165, 3019
MslI CAYNNNNRTG 5 cut(s) 125, 480, 858, 2405, 3816
Msp20I TGGCCA 2 cut(s) 165, 3019
MspA1I CMGCKG 2 cut(s) 461, 1707
MspCI CTTAAG 2 cut(s) 3253, 3491
MspI CCGG 2 cut(s) 43, 3110
MspR9I CCNGG 3 cut(s) 425, 1943, 3111
MunI CAATTG 2 cut(s) 1242, 2262
Mva1269I GAATGC 2 cut(s) 1662, 1784
MvaI CCWGG 2 cut(s) 425, 1943
MvnI CGCG 1 cut(s) 2578
NarI GGCGCC 1 cut(s) 3858
NciI CCSGG 1 cut(s) 3111
NcoI CCATGG 3 cut(s) 160, 1736, 2717
NdeI CATATG 6 cut(s) 340, 481, 616, 2534, 2863, 2909
NlaIV GGNNCC 8 cut(s) 520, 718, 997, 2274, 2601, 3859, 3939, 3940
NmeAIII GCCGAG 1 cut(s) 2222
NmuCI GTSAC 7 cut(s) 1224, 1288, 2059, 2809, 3424, 3601, 3659
NsiI ATGCAT 3 cut(s) 1664, 1786, 3882
NspI RCATGY 4 cut(s) 503, 1824, 3867, 3884
NspV TTCGAA 1 cut(s) 1129
OliI CACNNNNGTG 1 cut(s) 858
PaeI GCATGC 2 cut(s) 3867, 3884
PagI TCATGA 1 cut(s) 3247
PaqCI CACCTGC 1 cut(s) 224
PceI AGGCCT 1 cut(s) 777
PciI ACATGT 1 cut(s) 499
PciSI GCTCTTC 2 cut(s) 2139, 3475
PcsI WCGNNNNNNNCGW 1 cut(s) 3849
PctI GAATGC 2 cut(s) 1662, 1784
PdmI GAANNNNTTC 5 cut(s) 288, 1426, 1467, 2148, 2946
PflFI GACNNNGTC 1 cut(s) 1793
PflMI CCANNNNNTGG 2 cut(s) 2282, 3026
PfoI TCCNGGA 1 cut(s) 3109
PleI GAGTC 6 cut(s) 207, 449, 1564, 2215, 2806, 3258
PluTI GGCGCC 1 cut(s) 3861
PpsI GAGTC 6 cut(s) 207, 449, 1564, 2215, 2806, 3258
PscI ACATGT 1 cut(s) 499
PshBI ATTAAT 4 cut(s) 579, 636, 1890, 2832
Psp124BI GAGCTC 1 cut(s) 2203
Psp6I CCWGG 2 cut(s) 423, 1941
PspFI CCCAGC 2 cut(s) 436, 2083
PspGI CCWGG 2 cut(s) 423, 1941
PspN4I GGNNCC 8 cut(s) 520, 718, 997, 2274, 2601, 3859, 3939, 3940
PspOMI GGGCCC 1 cut(s) 3937
PspPI GGNCC 7 cut(s) 623, 2668, 3589, 3652, 3925, 3937, 3938
PstI CTGCAG 2 cut(s) 2955, 3054
PsuI RGATCY 3 cut(s) 1375, 1837, 1861
PsyI GACNNNGTC 1 cut(s) 1793
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 6 cut(s) 920, 1029, 1208, 1711, 2957, 3103
RsaNI GTAC 6 cut(s) 919, 1028, 1207, 1710, 2956, 3102
RseI CAYNNNNRTG 5 cut(s) 125, 480, 858, 2405, 3816
SacI GAGCTC 1 cut(s) 2203
SalI GTCGAC 1 cut(s) 3851
SapI GCTCTTC 2 cut(s) 2139, 3475
Sau96I GGNCC 7 cut(s) 623, 2668, 3589, 3652, 3925, 3937, 3938
ScaI AGTACT 2 cut(s) 1029, 2957
SchI GAGTC 6 cut(s) 208, 449, 1565, 2216, 2806, 3258
ScrFI CCNGG 3 cut(s) 425, 1943, 3111
SduI GDGCHC 7 cut(s) 22, 1270, 2191, 2203, 2431, 2602, 3941
SfcI CTRYAG 5 cut(s) 606, 1116, 1629, 2951, 3050
SfoI GGCGCC 1 cut(s) 3859
SfuI TTCGAA 1 cut(s) 1129
SinI GGWCC 4 cut(s) 623, 2668, 3589, 3652
SmiMI CAYNNNNRTG 5 cut(s) 125, 480, 858, 2405, 3816
SmlI CTYRAG 6 cut(s) 1192, 1841, 2710, 3253, 3491, 3929
SmoI CTYRAG 6 cut(s) 1192, 1841, 2710, 3253, 3491, 3929
SpeI ACTAGT 1 cut(s) 3667
SphI GCATGC 2 cut(s) 3867, 3884
SseBI AGGCCT 1 cut(s) 777
SspDI GGCGCC 1 cut(s) 3857
SspI AATATT 2 cut(s) 1552, 2549
SstI GAGCTC 1 cut(s) 2203
StuI AGGCCT 1 cut(s) 777
StyD4I CCNGG 3 cut(s) 423, 1941, 3109
StyI CCWWGG 7 cut(s) 74, 160, 957, 1092, 1736, 2717, 3475
TaiI ACGT 2 cut(s) 1410, 3717
TaqI TCGA 7 cut(s) 172, 673, 1129, 1788, 2445, 3321, 3852
TaqII GACCGA 1 cut(s) 3606
TatI WGTACW 3 cut(s) 1027, 2955, 3101
TauI GCSGC 4 cut(s) 2581, 3787, 3863, 3887
TscAI CASTG 9 cut(s) 301, 865, 1290, 1701, 1984, 3352, 3429, 3643, 3664
TseFI GTSAC 7 cut(s) 1224, 1288, 2059, 2809, 3424, 3601, 3659
TseI GCWGC 6 cut(s) 102, 572, 791, 1563, 2087, 2639
Tsp45I GTSAC 7 cut(s) 1224, 1288, 2059, 2809, 3424, 3601, 3659
TspGWI ACGGA 4 cut(s) 2285, 2639, 3443, 3678
TspRI CASTG 9 cut(s) 301, 865, 1290, 1701, 1984, 3352, 3429, 3643, 3664
Tth111I GACNNNGTC 1 cut(s) 1793
Van91I CCANNNNNTGG 2 cut(s) 2282, 3026
Vha464I CTTAAG 2 cut(s) 3253, 3491
VpaK11BI GGWCC 4 cut(s) 623, 2668, 3589, 3652
VspI ATTAAT 4 cut(s) 579, 636, 1890, 2832
XagI CCTNNNNNAGG 3 cut(s) 422, 3167, 3198
XbaI TCTAGA 2 cut(s) 2203, 3223
XceI RCATGY 4 cut(s) 503, 1824, 3867, 3884
XcmI CCANNNNNNNNNTGG 2 cut(s) 124, 3012
XmiI GTMKAC 1 cut(s) 3852
XmnI GAANNNNTTC 5 cut(s) 288, 1426, 1467, 2148, 2946
ZrmI AGTACT 2 cut(s) 1029, 2957
Zsp2I ATGCAT 3 cut(s) 1664, 1786, 3882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.