Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

50387112 .. 50388378

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGAACAAGATAATATCAGTGGAGAGAATACTACAATATACTACTAGTATACCAAGTGAGCCTCCTCTGGTAATTGAATCTAGTAGACCAGATCATTCCTGGCCATCACGAGGAAAAGTTGATATGCATGATATTCAGGTGCGGTATGCTCCACACTTGCCACTTGTGTTACGGGGTCTCACATGTACCATTCCTGGAGGAATGAAAACTGGGATTGTGGGGAGAACTGGCAGTGGAAAGTCAACTCTTATACAAACTCTTTTCCGAATCGTTGATCCTGATGCTGGCCGGATTTTGATAGATGGCATCGATATCTCTTCTATTGGATTGCATGATCTGCGGTCTAATCTAAGCATTATCCCTCAGGACCCAACCATGTTTGAGGGAACTGTAAGAAGCAATCTGGACCCTCTTGAAGAGTACAAAGATGAACAAATTTGGGAGGCCTTGGATAAGTGCCAACTTGCAGATGAAGTTAGGAAGAAAGAAGGGAAGCTGGATGCTGCAGTTAGTGAAAATGGAGAGAACTGGAGTATGGGTCAGAGGCAGCTCGTTTGCCTGGGCCGTGTGCTCCTCAAGAAAAGTAAGGTCCTGGTGCTTGATGAAGCTACTGCATCTGTTGATACTGCTACAGATAATCTGATTCAGCAGACCCTTCGGCATCACTTCTCAGACTGTACCGTCATTACTATTGCGCACAGAATATCTTCTGTTCTTGACAGTGACATGGTTCTTCTTCTAAGTAATGGGCTTCTTGAGGAATGTGATTCTCCTGCAAGATTGCTAGAAAACAAGTTATCAGCTTTTGCCCAACTTGTAGCGGAGTACACAATGAGATCGAATTCCACTCTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

286

Amino Acids

31.68

Weight (kDa)

5.31

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	58 - 206	1.1e-29	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
Acc16I	TGCGCA	1 cut(s)	699
AccI	GTMKAC	2 cut(s)	52, 88
AciI	CCGC	3 cut(s)	145, 343, 824
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	2 cut(s)	104, 289
AcsI	RAATTY	2 cut(s)	438, 844
AcuI	CTGAAG	1 cut(s)	839
AfaI	GTAC	4 cut(s)	190, 425, 682, 830
AfiI	CCNNNNNNNGG	2 cut(s)	113, 287
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	80, 419
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	4 cut(s)	101, 196, 561, 594
AluBI	AGCT	4 cut(s)	499, 553, 611, 806
AluI	AGCT	4 cut(s)	499, 553, 611, 806
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	4 cut(s)	104, 289, 447, 565
ApeKI	GCWGC	2 cut(s)	506, 550
ApoI	RAATTY	2 cut(s)	438, 844
Asp700I	GAANNNNTTC	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	4 cut(s)	370, 409, 565, 592
AvaII	GGWCC	3 cut(s)	370, 409, 592
AxyI	CCTNAGG	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	106
BauI	CACGAG	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	493, 562
BccI	CCATC	2 cut(s)	115, 299
BceAI	ACGGC	1 cut(s)	552
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	4 cut(s)	103, 198, 563, 596
BcoDI	GTCTC	1 cut(s)	185
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	3 cut(s)	48, 84, 788
BfmI	CTRYAG	2 cut(s)	507, 633
BisI	GCNGC	2 cut(s)	507, 551
BlsI	GCNGC	2 cut(s)	508, 552
Bme1390I	CCNGG	4 cut(s)	103, 198, 563, 596
Bme18I	GGWCC	3 cut(s)	370, 409, 592
BmgT120I	GGNCC	4 cut(s)	370, 409, 565, 592
BmiI	GGNNCC	2 cut(s)	372, 411
BmrFI	CCNGG	4 cut(s)	103, 198, 563, 596
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	5 cut(s)	274, 318, 493, 626, 673
BmuI	ACTGGG	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	219, 553
BpuEI	CTTGAG	2 cut(s)	563, 779
Bsa29I	ATCGAT	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	450, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 287
Bse1I	ACTGG	3 cut(s)	217, 235, 536
Bse21I	CCTNAGG	1 cut(s)	366
BseBI	CCWGG	4 cut(s)	103, 198, 563, 596
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	450, 562
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	113, 287
BseMII	CTCAG	2 cut(s)	380, 687
BseNI	ACTGG	3 cut(s)	217, 235, 536
BseRI	GAGGAG	2 cut(s)	57, 566
BseXI	GCAGC	2 cut(s)	493, 562
BshFI	GGCC	4 cut(s)	106, 291, 449, 567
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	113, 287
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	106, 291, 449, 567
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	94, 277, 337, 839
BspACI	CCGC	3 cut(s)	145, 343, 824
BspANI	GGCC	4 cut(s)	106, 291, 449, 567
BspCNI	CTCAG	2 cut(s)	379, 686
BspDI	ATCGAT	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	372, 411
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	217, 235, 536
BssECI	CCNNGG	2 cut(s)	450, 562
BssMI	GATC	4 cut(s)	94, 277, 337, 839
BssNAI	GTATAC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	4 cut(s)	103, 198, 563, 596
Bst4CI	ACNGT	4 cut(s)	394, 680, 685, 725
Bst6I	CTCTTC	3 cut(s)	325, 414, 858
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	353, 366, 673, 743
BstF5I	GGATG	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	4 cut(s)	97, 280, 340, 842
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	94, 277, 337, 839
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	4 cut(s)	103, 198, 563, 596
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	4 cut(s)	101, 196, 561, 594
BstSFI	CTRYAG	2 cut(s)	507, 633
BstV1I	GCAGC	2 cut(s)	493, 562
BstZ17I	GTATAC	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	4 cut(s)	106, 291, 449, 567
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	3 cut(s)	27, 241, 730
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	700
Cfr13I	GGNCC	4 cut(s)	370, 409, 565, 592
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	4 cut(s)	189, 424, 681, 829
CviAII	CATG	5 cut(s)	131, 186, 335, 379, 730
CviQI	GTAC	4 cut(s)	189, 424, 681, 829
DdeI	CTNAG	4 cut(s)	353, 366, 673, 743
DpnI	GATC	4 cut(s)	96, 279, 339, 841
DpnII	GATC	4 cut(s)	94, 277, 337, 839
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
EaeI	YGGCCR	2 cut(s)	104, 289
Eam1104I	CTCTTC	3 cut(s)	325, 414, 858
EarI	CTCTTC	3 cut(s)	325, 414, 858
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	3 cut(s)	370, 409, 592
Eco57I	CTGAAG	1 cut(s)	839
Eco81I	CCTNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	370, 592
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	4 cut(s)	101, 196, 561, 594
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	5 cut(s)	134, 189, 338, 382, 733
FatI	CATG	5 cut(s)	130, 185, 334, 378, 729
FblI	GTMKAC	2 cut(s)	52, 88
Fnu4HI	GCNGC	2 cut(s)	507, 551
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	2 cut(s)	507, 551
FspBI	CTAG	3 cut(s)	48, 84, 788
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	2 cut(s)	507, 551
GsuI	CTGGAG	2 cut(s)	219, 553
HaeIII	GGCC	4 cut(s)	106, 291, 449, 567
HapII	CCGG	1 cut(s)	292
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	5 cut(s)	134, 189, 338, 382, 733
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	4 cut(s)	80, 270, 646, 770
HpaII	CCGG	1 cut(s)	292
Hpy166II	GTNNAC	4 cut(s)	53, 89, 246, 831
Hpy188I	TCNGA	4 cut(s)	269, 546, 645, 676
Hpy188III	TCNNGA	8 cut(s)	111, 281, 368, 407, 416, 580, 719, 758
Hpy8I	GTNNAC	4 cut(s)	53, 89, 246, 831
HpyAV	CCTTC	2 cut(s)	485, 668
HpyCH4III	ACNGT	4 cut(s)	394, 680, 685, 725
HpyCH4V	TGCA	6 cut(s)	130, 334, 470, 509, 617, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	4 cut(s)	353, 366, 673, 743
Hsp92II	CATG	5 cut(s)	134, 189, 338, 382, 733
HspAI	GCGC	1 cut(s)	698
Kzo9I	GATC	4 cut(s)	94, 277, 337, 839
LmnI	GCTCC	2 cut(s)	157, 579
Lsp1109I	GCAGC	2 cut(s)	493, 562
LweI	GCATC	5 cut(s)	274, 318, 493, 626, 673
MaeI	CTAG	3 cut(s)	48, 84, 788
MaeIII	GTNAC	2 cut(s)	171, 725
MalI	GATC	4 cut(s)	96, 279, 339, 841
MboI	GATC	4 cut(s)	94, 277, 337, 839
MboII	GAAGA	7 cut(s)	312, 431, 496, 702, 728, 731, 845
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	3 cut(s)	75, 438, 844
MluNI	TGGCCA	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	106
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	4 cut(s)	103, 198, 563, 596
MvaI	CCWGG	4 cut(s)	103, 198, 563, 596
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	4 cut(s)	94, 277, 337, 839
NlaIII	CATG	5 cut(s)	134, 189, 338, 382, 733
NlaIV	GGNNCC	2 cut(s)	372, 411
NmuCI	GTSAC	1 cut(s)	725
NsbI	TGCGCA	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	449
PciI	ACATGT	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	4 cut(s)	80, 270, 646, 770
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	508, 552
PpuMI	RGGWCCY	2 cut(s)	370, 592
PscI	ACATGT	1 cut(s)	185
Psp5II	RGGWCCY	2 cut(s)	370, 592
Psp6I	CCWGG	4 cut(s)	101, 196, 561, 594
PspGI	CCWGG	4 cut(s)	101, 196, 561, 594
PspN4I	GGNNCC	2 cut(s)	372, 411
PspPI	GGNCC	4 cut(s)	370, 409, 565, 592
PspPPI	RGGWCCY	2 cut(s)	370, 592
PstI	CTGCAG	1 cut(s)	511
RsaI	GTAC	4 cut(s)	190, 425, 682, 830
RsaNI	GTAC	4 cut(s)	189, 424, 681, 829
SatI	GCNGC	2 cut(s)	507, 551
Sau3AI	GATC	4 cut(s)	94, 277, 337, 839
Sau96I	GGNCC	4 cut(s)	370, 409, 565, 592
ScrFI	CCNGG	4 cut(s)	103, 198, 563, 596
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	6 cut(s)	144, 501, 555, 594, 613, 808
SfaNI	GCATC	5 cut(s)	274, 318, 493, 626, 673
SfcI	CTRYAG	2 cut(s)	507, 633
SinI	GGWCC	3 cut(s)	370, 409, 592
SmlI	CTYRAG	2 cut(s)	578, 758
SmoI	CTYRAG	2 cut(s)	578, 758
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	3 cut(s)	75, 438, 844
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	145, 343, 824
SspMI	CTAG	3 cut(s)	48, 84, 788
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	4 cut(s)	101, 196, 561, 594
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	394, 680, 685, 725
TaqI	TCGA	2 cut(s)	312, 842
TasI	AATT	3 cut(s)	75, 438, 844
TatI	WGTACW	2 cut(s)	423, 828
TfiI	GAWTC	4 cut(s)	80, 270, 646, 770
TscAI	CASTG	3 cut(s)	27, 241, 730
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	2 cut(s)	506, 550
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	4 cut(s)	221, 447, 489, 621
TspRI	CASTG	3 cut(s)	27, 241, 730
VpaK11BI	GGWCC	3 cut(s)	370, 409, 592
XapI	RAATTY	2 cut(s)	438, 844
XceI	RCATGY	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmiI	GTMKAC	2 cut(s)	52, 88
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	3 cut(s)	48, 84, 788
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.