Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

16930138 .. 16934333

Gene Structure 4196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G111400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCTGCAATGGAATGGCTTTCCTTCAGACTAAATCTACTCTCCAACTTTGTTTTCGCCTTCTCTTTGGTTTTGCTGGTGACCCTGCCCGAAGGAGTTATCAATCCAAGCATTGCAGGGTTGGCGGTAACATATGGAATAAATTTGAATGTTTTGCAAGCTTCTGTTATATGGAACATATGCAACGCAGAAAATAAGATGATCTCAGTTGAAAGAATTCTACAGTATTCAAACCTAACAAGTGAAGCACCTCTGTTAATTGAAGAGTCCAGGCCACCAATCAATTGGCCAGAAGTTGGAACAATTTGTTTCAAAAATCTGCAGATTCGTTATGCTGAACATCTTCCATCCGTGCTGAAAAACATTAGCTGCACATTCCCAGGACAGAAAAAAGTTGGTGTTGTAGGAAGGACAGGAAGTGGGAAATCAACCCTCATACAGGCCATTTTCAGGGTAGTTGAGCCTAGAGAAGGAAGCATTATAATTGATGATGTGGACATTTCCAAGATTGGCCTTCATGACTTAAGATCAAGGCTTAGCATCATTCCACAGGACCCAACAATGTTTGAAGGAACAGTTAGAGGAAACCTTGACCCGCTAGAGCAATATTCCGATAGTGATGTTTGGGAGGCTCTAAATAAATGTCAGCTAGGTGATCTGGTGCGTGCAAAGGAACAGAAGTTGGATGCCTCAGTGGTCGAAAATGGAGAAAATTGGAGTGTGGGCCAAAGACAGTTAGTTTGTCTTGGAAGAGCCTTGCTAAAGAAAAGCAAAATTCTGGTGTTGGATGAAGCAACAGCATCAGTTGATTCTGCAACTGATGGAGTGATACAGAAGGTCATCAGTCGAGAATTCAAAGATCGAACGGTTGTTACAATAGCTCACAGAATCCACACAGTAATTGACAGTGATCTCGTTTTGGTGCTCAGTGATGGACGGGTTGCTGAATACGACACGCCAGCCAAGCTACTAGAGAGAGAAGAGTCATTATTTTCTAAACTCATAAAGGAGTACTCGATGAGATCCCAAAGCTTCAACAACTTAGCAAATCTACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

354

Amino Acids

39.25

Weight (kDa)

5.58

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	2 cut(s)	125, 596
AclWI	GGATC	1 cut(s)	1017
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	4 cut(s)	142, 216, 774, 851
AcuI	CTGAAG	1 cut(s)	10
AfaI	GTAC	1 cut(s)	1013
AfiI	CCNNNNNNNGG	4 cut(s)	296, 439, 450, 470
AflII	CTTAAG	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	148, 212, 231, 263, 313, 569, 856, 1036
AjnI	CCWGG	2 cut(s)	269, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	6 cut(s)	161, 369, 649, 881, 967, 1032
AluI	AGCT	6 cut(s)	161, 369, 649, 881, 967, 1032
Alw21I	GWGCWC	1 cut(s)	927
AlwI	GGATC	1 cut(s)	1017
AoxI	GGCC	5 cut(s)	272, 287, 441, 511, 724
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	4 cut(s)	142, 216, 774, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
Asp700I	GAANNNNTTC	2 cut(s)	216, 342
AspS9I	GGNCC	2 cut(s)	553, 724
AsuHPI	GGTGA	2 cut(s)	91, 665
AvaII	GGWCC	1 cut(s)	553
BalI	TGGCCA	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	3 cut(s)	355, 815, 926
BciT130I	CCWGG	2 cut(s)	271, 381
BfaI	CTAG	4 cut(s)	465, 599, 650, 971
BfmI	CTRYAG	2 cut(s)	221, 320
BfrI	CTTAAG	1 cut(s)	523
BisI	GCNGC	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	371
BmcAI	AGTACT	1 cut(s)	1013
Bme1390I	CCNGG	2 cut(s)	271, 381
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	553, 724
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	2 cut(s)	271, 381
BmsI	GCATC	3 cut(s)	549, 676, 809
Bpu1102I	GCTNAGC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 439, 450, 470
Bse3DI	GCAATG	2 cut(s)	15, 111
BseBI	CCWGG	2 cut(s)	271, 381
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	3 cut(s)	347, 691, 793
BseLI	CCNNNNNNNGG	4 cut(s)	296, 439, 450, 470
BseMI	GCAATG	2 cut(s)	15, 111
BseMII	CTCAG	3 cut(s)	219, 705, 940
BseXI	GCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	355
BshFI	GGCC	5 cut(s)	274, 289, 443, 513, 726
BsiHKAI	GWGCWC	1 cut(s)	927
BslI	CCNNNNNNNGG	4 cut(s)	296, 439, 450, 470
BsnI	GGCC	5 cut(s)	274, 289, 443, 513, 726
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp143I	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	2 cut(s)	125, 596
BspANI	GGCC	5 cut(s)	274, 289, 443, 513, 726
BspCNI	CTCAG	3 cut(s)	218, 704, 939
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	1 cut(s)	1017
BspQI	GCTCTTC	1 cut(s)	745
BspTI	CTTAAG	1 cut(s)	523
BsrDI	GCAATG	2 cut(s)	15, 111
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
Bst2UI	CCWGG	2 cut(s)	271, 381
Bst4CI	ACNGT	6 cut(s)	225, 577, 735, 868, 898, 908
Bst6I	CTCTTC	3 cut(s)	258, 745, 975
BstAFI	CTTAAG	1 cut(s)	523
BstC8I	GCNNGC	3 cut(s)	159, 666, 960
BstDEI	CTNAG	5 cut(s)	205, 536, 691, 926, 1042
BstEII	GGTNACC	1 cut(s)	79
BstENI	CCTNNNNNAGG	2 cut(s)	437, 468
BstF5I	GGATG	3 cut(s)	347, 691, 793
BstKTI	GATC	6 cut(s)	204, 530, 658, 862, 913, 1025
BstMBI	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 964
BstNI	CCWGG	2 cut(s)	271, 381
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	269, 379
BstSFI	CTRYAG	2 cut(s)	221, 320
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	1022
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	1022
BsuRI	GGCC	5 cut(s)	274, 289, 443, 513, 726
BtsCI	GGATG	3 cut(s)	347, 691, 793
BtsIMutI	CAGTG	3 cut(s)	699, 913, 934
Cac8I	GCNNGC	3 cut(s)	159, 666, 960
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	553, 724
Csp6I	GTAC	1 cut(s)	1012
CviAII	CATG	1 cut(s)	518
CviQI	GTAC	1 cut(s)	1012
DdeI	CTNAG	5 cut(s)	205, 536, 691, 926, 1042
DpnI	GATC	6 cut(s)	203, 529, 657, 861, 912, 1024
DpnII	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	3 cut(s)	258, 745, 975
EarI	CTCTTC	3 cut(s)	258, 745, 975
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	10
Eco91I	GGTNACC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	2 cut(s)	437, 468
EcoO109I	RGGNCCY	1 cut(s)	553
EcoO65I	GGTNACC	1 cut(s)	79
EcoRI	GAATTC	2 cut(s)	216, 851
EcoRII	CCWGG	2 cut(s)	269, 379
FaeI	CATG	1 cut(s)	521
FatI	CATG	1 cut(s)	517
FauI	CCCGC	1 cut(s)	603
FauNDI	CATATG	2 cut(s)	133, 179
Fnu4HI	GCNGC	1 cut(s)	370
FokI	GGATG	3 cut(s)	334, 698, 800
Fsp4HI	GCNGC	1 cut(s)	370
FspBI	CTAG	4 cut(s)	465, 599, 650, 971
GluI	GCNGC	1 cut(s)	370
HaeIII	GGCC	5 cut(s)	274, 289, 443, 513, 726
Hin1II	CATG	1 cut(s)	521
HindIII	AAGCTT	2 cut(s)	159, 1030
HinfI	GANTC	5 cut(s)	266, 325, 809, 888, 983
HphI	GGTGA	2 cut(s)	91, 665
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	2 cut(s)	29, 613
Hpy188III	TCNNGA	2 cut(s)	518, 848
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	8 cut(s)	34, 70, 86, 402, 464, 524, 563, 829
HpyCH4III	ACNGT	6 cut(s)	225, 577, 735, 868, 898, 908
HpyCH4V	TGCA	8 cut(s)	8, 116, 157, 183, 322, 372, 668, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 964
HpyF3I	CTNAG	5 cut(s)	205, 536, 691, 926, 1042
Hsp92II	CATG	1 cut(s)	521
Kzo9I	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
LguI	GCTCTTC	1 cut(s)	745
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	3 cut(s)	549, 676, 809
MaeI	CTAG	4 cut(s)	465, 599, 650, 971
MaeIII	GTNAC	3 cut(s)	79, 127, 871
MalI	GATC	6 cut(s)	203, 529, 657, 861, 912, 1024
MboI	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
MboII	GAAGA	4 cut(s)	275, 335, 762, 992
MfeI	CAATTG	1 cut(s)	283
MflI	RGATCY	1 cut(s)	1022
MhlI	GDGCHC	1 cut(s)	927
MlsI	TGGCCA	1 cut(s)	289
MluNI	TGGCCA	1 cut(s)	289
MlyI	GAGTC	2 cut(s)	275, 992
MmeI	TCCRAC	4 cut(s)	69, 277, 663, 765
MnlI	CCTC	5 cut(s)	261, 443, 575, 622, 700
Mox20I	TGGCCA	1 cut(s)	289
MroXI	GAANNNNTTC	2 cut(s)	216, 342
MscI	TGGCCA	1 cut(s)	289
MseI	TTAA	3 cut(s)	257, 524, 1060
Msp20I	TGGCCA	1 cut(s)	289
MspCI	CTTAAG	1 cut(s)	523
MspR9I	CCNGG	2 cut(s)	271, 381
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	2 cut(s)	271, 381
MwoI	GCNNNNNNNGC	2 cut(s)	122, 964
NdeI	CATATG	2 cut(s)	133, 179
NdeII	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	745
PdmI	GAANNNNTTC	2 cut(s)	216, 342
PfeI	GAWTC	3 cut(s)	325, 809, 888
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	371
PleI	GAGTC	2 cut(s)	274, 991
PpsI	GAGTC	2 cut(s)	274, 991
PpuMI	RGGWCCY	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	482
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	269, 379
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	269, 379
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	553, 724
PspPPI	RGGWCCY	1 cut(s)	553
PsrI	GAACNNNNNNTAC	2 cut(s)	856, 888
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	1022
RsaI	GTAC	1 cut(s)	1013
RsaNI	GTAC	1 cut(s)	1012
SapI	GCTCTTC	1 cut(s)	745
SaqAI	TTAA	3 cut(s)	257, 524, 1060
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	6 cut(s)	201, 527, 655, 859, 910, 1022
Sau96I	GGNCC	2 cut(s)	553, 724
ScaI	AGTACT	1 cut(s)	1013
SchI	GAGTC	2 cut(s)	275, 992
ScrFI	CCNGG	2 cut(s)	271, 381
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	3 cut(s)	549, 676, 809
SfcI	CTRYAG	2 cut(s)	221, 320
SinI	GGWCC	1 cut(s)	553
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
SsiI	CCGC	2 cut(s)	125, 596
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	4 cut(s)	465, 599, 650, 971
StyD4I	CCNGG	2 cut(s)	269, 379
TaaI	ACNGT	6 cut(s)	225, 577, 735, 868, 898, 908
TaqI	TCGA	4 cut(s)	699, 847, 862, 1016
TatI	WGTACW	1 cut(s)	1011
TfiI	GAWTC	3 cut(s)	325, 809, 888
Tru1I	TTAA	3 cut(s)	257, 524, 1060
Tru9I	TTAA	3 cut(s)	257, 524, 1060
TscAI	CASTG	3 cut(s)	699, 913, 934
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	506, 804
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	3 cut(s)	699, 913, 934
Van91I	CCANNNNNTGG	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	553
XagI	CCTNNNNNAGG	2 cut(s)	437, 468
XapI	RAATTY	4 cut(s)	142, 216, 774, 851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XmnI	GAANNNNTTC	2 cut(s)	216, 342
XspI	CTAG	4 cut(s)	465, 599, 650, 971
ZrmI	AGTACT	1 cut(s)	1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.