Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

24986770 .. 24988218

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G236000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAATGGCTGTCCGTTCGGACCAATTTTCTGTTCAACCACGTTTACTTCATTGTTCTTATCATCTTGGTCGGCCTGCCTAGGTCTGCCATTGATCCTAGTTTGGCAGGTTTGGCTGCTACTTATGGTTTGAACCTAAATGTTCTGCAAGCTTGGGTGATATGGAATACATGCAATGTAGAAAACAAAATGATATCAATGGAGAGAATTCTTCAGTTCACAAAGATACCAATTGAAGCACCACTAGTGATTGAAGACAATAGACCAGTTCCTGAATGGCCCATGGCAGGAAAAATTGAAATCGAAAACCTTCATGTGCAATATAATCCAGCTCTCCCAACTGTTCTCAAAGGGATCACTTGCACCTTCCCTGGAGGGAAGAAAATAGGAGTCGTAGGCAGGACAGGGAGTGGAAAGTCCACTTTGATCCAAGCGCTCTTCAGGATAGTGGAACCCTCAGGAGGGCAGATTCTTATTGATGGTGTTGATATTTCTAAGATAGGTCTGCAGGACTTAAGGTCAAGGTTGTGCATTATTCCACAAGACCCAACTTTATTTCAAGGAACAATGAAGACCAATCTGGATCATTTGCAACAACATTCTGATCAAGCACTCGGGGAGGTTCTGAATCAATGTCGACTGGCGGAGATCGTTAAGCAGGACCAAAGGCTTCTTGATACACCTGTTGCTGAAGATGGAGAAAACTGGAGTGTTGGACAGAGGCAGCTTGTTTGCCTGGCCCGAGTGCTTTTAAAGAAAAGGAAAATTATCGTCATGGATGAGGCTACAGCTTCTGTTGATACAGCAACCGATATTCTAATTCAGCAGATAATAAGAAAAGAAACGAGTGGATGCATTGTGATCTCTCCGACAATGACCTGGGTTTTAGAGTATGATTCTCCAGCTCGGTTACTTGAGGATAGTTCTTCTGCATTCTCCAAATTGGTTACAGAATTTTTGAGGACATCTTCCATGAGCAAGGGCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

330

Amino Acids

36.52

Weight (kDa)

6.14

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	637
AciI	CCGC	1 cut(s)	644
AclWI	GGATC	4 cut(s)	89, 362, 421, 591
AcsI	RAATTY	2 cut(s)	207, 953
AcuI	CTGAAG	3 cut(s)	197, 424, 711
AfeI	AGCGCT	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	287, 461, 462
AflII	CTTAAG	1 cut(s)	514
AgsI	TTSAA	6 cut(s)	37, 133, 236, 254, 299, 560
AhdI	GACNNNNNGTC	1 cut(s)	517
AhlI	ACTAGT	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	370, 735, 878
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	5 cut(s)	152, 332, 727, 791, 905
AluI	AGCT	5 cut(s)	152, 332, 727, 791, 905
AlwI	GGATC	4 cut(s)	89, 362, 421, 591
AlwNI	CAGNNNCTG	2 cut(s)	272, 794
Ama87I	CYCGRG	2 cut(s)	614, 741
Aor51HI	AGCGCT	1 cut(s)	435
AoxI	GGCC	4 cut(s)	73, 278, 738, 982
ApeKI	GCWGC	2 cut(s)	116, 724
ApoI	RAATTY	2 cut(s)	207, 953
Asp700I	GAANNNNTTC	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	5 cut(s)	21, 279, 661, 739, 982
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	2 cut(s)	614, 741
AvaII	GGWCC	2 cut(s)	21, 661
AvrII	CCTAGG	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	457
BaeI	ACNNNNGTAYC	2 cut(s)	669, 702
BbsI	GAAGAC	2 cut(s)	261, 578
BbvI	GCAGC	2 cut(s)	103, 736
BccI	CCATC	2 cut(s)	473, 689
BciT130I	CCWGG	3 cut(s)	372, 737, 880
BclI	TGATCA	1 cut(s)	604
BcuI	ACTAGT	1 cut(s)	244
BfaI	CTAG	3 cut(s)	81, 99, 245
BfmI	CTRYAG	3 cut(s)	506, 786, 986
BfoI	RGCGCY	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	117, 725
BlnI	CCTAGG	1 cut(s)	80
BlsI	GCNGC	2 cut(s)	118, 726
Bme1390I	CCNGG	3 cut(s)	372, 737, 880
Bme18I	GGWCC	2 cut(s)	21, 661
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmeT110I	CYCGRG	2 cut(s)	614, 741
BmgT120I	GGNCC	5 cut(s)	21, 279, 661, 739, 982
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	3 cut(s)	372, 737, 880
BmsI	GCATC	1 cut(s)	842
BpiI	GAAGAC	2 cut(s)	261, 578
BpmI	CTGGAG	3 cut(s)	393, 727, 885
BpuEI	CTTGAG	1 cut(s)	935
BsaJI	CCNNGG	4 cut(s)	80, 282, 370, 879
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 461, 462
Bse1I	ACTGG	3 cut(s)	266, 645, 710
Bse21I	CCTNAGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	3 cut(s)	372, 737, 880
BseDI	CCNNGG	4 cut(s)	80, 282, 370, 879
BseGI	GGATG	2 cut(s)	784, 857
BseLI	CCNNNNNNNGG	3 cut(s)	287, 461, 462
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	3 cut(s)	266, 645, 710
BseXI	GCAGC	2 cut(s)	103, 736
BshFI	GGCC	4 cut(s)	75, 280, 740, 984
BsiHKCI	CYCGRG	2 cut(s)	614, 741
BslI	CCNNNNNNNGG	3 cut(s)	287, 461, 462
BsmI	GAATGC	1 cut(s)	932
BsnI	GGCC	4 cut(s)	75, 280, 740, 984
BsoBI	CYCGRG	2 cut(s)	614, 741
Bsp143I	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	4 cut(s)	75, 280, 740, 984
BspCNI	CTCAG	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	510
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	4 cut(s)	89, 362, 421, 591
BspQI	GCTCTTC	1 cut(s)	443
BspTI	CTTAAG	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	266, 645, 710
BssECI	CCNNGG	4 cut(s)	80, 282, 370, 879
BssMI	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
BssT1I	CCWWGG	2 cut(s)	80, 282
Bst2UI	CCWGG	3 cut(s)	372, 737, 880
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	443
BstAFI	CTTAAG	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	77, 150
BstDEI	CTNAG	2 cut(s)	457, 495
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	784, 857
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	7 cut(s)	97, 357, 429, 586, 607, 651, 864
BstMBI	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	3 cut(s)	372, 737, 880
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	3 cut(s)	370, 735, 878
BstSFI	CTRYAG	3 cut(s)	506, 786, 986
BstV1I	GCAGC	2 cut(s)	103, 736
BstV2I	GAAGAC	2 cut(s)	261, 578
Bsu36I	CCTNAGG	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	75, 280, 740, 984
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	784, 857
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	77, 150
CaiI	CAGNNNCTG	2 cut(s)	272, 794
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	5 cut(s)	21, 279, 661, 739, 982
CviAII	CATG	5 cut(s)	171, 283, 314, 775, 973
DdeI	CTNAG	2 cut(s)	457, 495
DpnI	GATC	7 cut(s)	96, 356, 428, 585, 606, 650, 863
DpnII	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
DraI	TTTAAA	1 cut(s)	753
DriI	GACNNNNNGTC	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	443
EciI	GGCGGA	1 cut(s)	659
Eco130I	CCWWGG	2 cut(s)	80, 282
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	21, 661
Eco47III	AGCGCT	1 cut(s)	435
Eco57I	CTGAAG	3 cut(s)	197, 424, 711
Eco81I	CCTNAGG	1 cut(s)	457
Eco88I	CYCGRG	2 cut(s)	614, 741
EcoO109I	RGGNCCY	1 cut(s)	982
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	370, 735, 878
EcoRV	GATATC	1 cut(s)	195
EcoT14I	CCWWGG	2 cut(s)	80, 282
EcoT22I	ATGCAT	1 cut(s)	857
ErhI	CCWWGG	2 cut(s)	80, 282
FaeI	CATG	5 cut(s)	174, 286, 317, 778, 976
FatI	CATG	5 cut(s)	170, 282, 313, 774, 972
FbaI	TGATCA	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	117, 725
FokI	GGATG	2 cut(s)	791, 864
Fsp4HI	GCNGC	2 cut(s)	117, 725
FspBI	CTAG	3 cut(s)	81, 99, 245
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	2 cut(s)	117, 725
GsuI	CTGGAG	3 cut(s)	393, 727, 885
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	4 cut(s)	75, 280, 740, 984
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	174, 286, 317, 778, 976
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	4 cut(s)	390, 469, 628, 896
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	4 cut(s)	46, 219, 420, 638
Hpy188I	TCNGA	4 cut(s)	21, 604, 627, 870
Hpy188III	TCNNGA	5 cut(s)	272, 442, 459, 581, 674
Hpy8I	GTNNAC	4 cut(s)	46, 219, 420, 638
HpyAV	CCTTC	2 cut(s)	320, 376
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	9 cut(s)	148, 174, 319, 363, 508, 531, 592, 855, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	457, 495
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	174, 286, 317, 778, 976
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
LguI	GCTCTTC	1 cut(s)	443
Lsp1109I	GCAGC	2 cut(s)	103, 736
LweI	GCATC	1 cut(s)	842
MaeI	CTAG	3 cut(s)	81, 99, 245
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	909, 946
MalI	GATC	7 cut(s)	96, 356, 428, 585, 606, 650, 863
MboI	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
MboII	GAAGA	8 cut(s)	203, 266, 391, 430, 583, 704, 918, 960
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	8 cut(s)	25, 207, 231, 294, 765, 819, 941, 953
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	2 cut(s)	694, 893
MnlI	CCTC	8 cut(s)	368, 455, 466, 613, 714, 775, 910, 954
Mph1103I	ATGCAT	1 cut(s)	857
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	3 cut(s)	515, 654, 752
MspCI	CTTAAG	1 cut(s)	514
MspR9I	CCNGG	3 cut(s)	372, 737, 880
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	932
MvaI	CCWGG	3 cut(s)	372, 737, 880
MwoI	GCNNNNNNNGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
NlaIII	CATG	5 cut(s)	174, 286, 317, 778, 976
NlaIV	GGNNCC	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	857
NspI	RCATGY	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	443
PctI	GAATGC	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	469, 628, 896
PkrI	GCNGC	2 cut(s)	118, 726
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	3 cut(s)	370, 735, 878
PspGI	CCWGG	3 cut(s)	370, 735, 878
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	5 cut(s)	21, 279, 661, 739, 982
PstI	CTGCAG	1 cut(s)	510
PstNI	CAGNNNCTG	2 cut(s)	272, 794
SalI	GTCGAC	1 cut(s)	636
SapI	GCTCTTC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	515, 654, 752
SatI	GCNGC	2 cut(s)	117, 725
Sau3AI	GATC	7 cut(s)	94, 354, 426, 583, 604, 648, 861
Sau96I	GGNCC	5 cut(s)	21, 279, 661, 739, 982
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	3 cut(s)	372, 737, 880
SfaNI	GCATC	1 cut(s)	842
SfcI	CTRYAG	3 cut(s)	506, 786, 986
SinI	GGWCC	2 cut(s)	21, 661
SmlI	CTYRAG	2 cut(s)	514, 914
SmoI	CTYRAG	2 cut(s)	514, 914
SpeI	ACTAGT	1 cut(s)	244
Sse9I	AATT	8 cut(s)	25, 207, 231, 294, 765, 819, 941, 953
SsiI	CCGC	1 cut(s)	644
SspMI	CTAG	3 cut(s)	81, 99, 245
StyD4I	CCNGG	3 cut(s)	370, 735, 878
StyI	CCWWGG	2 cut(s)	80, 282
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	303, 637
TasI	AATT	8 cut(s)	25, 207, 231, 294, 765, 819, 941, 953
TfiI	GAWTC	3 cut(s)	469, 628, 896
Tru1I	TTAA	3 cut(s)	515, 654, 752
Tru9I	TTAA	3 cut(s)	515, 654, 752
TseI	GCWGC	2 cut(s)	116, 724
TspDTI	ATGAA	3 cut(s)	40, 302, 584
TspGWI	ACGGA	1 cut(s)	4
Vha464I	CTTAAG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	21, 661
XapI	RAATTY	2 cut(s)	207, 953
XceI	RCATGY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XmaJI	CCTAGG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	3 cut(s)	81, 99, 245
Zsp2I	ATGCAT	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.