Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001169.1

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

41675 .. 42642

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001169.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgcagatttcacctgagcctccggaaattgtggaggacaataggccaccttcttcatggcctatgaagggtaggatagagctgtattctctgaataactctccactcgttctcaagggaatcacatgcacattcaaagaagggactagagtaggagttgtgggaaggacaggaagtggcaaaactacagtactcataagtgctttgtttcgtttagtagagccaagcagtggtaaaattattatagatggacttgacatcttctctattggtctaaaagatttgagaatgaagctcagcatcatccctcaagaaccaacacttttcaggggtagcattcgaaccaacttggatcctctaggcctatactctgacgatgaaatatggagggctctagagaagtgtcagctcaaggcaacagtcagtagcctacctaattttctggactcgtctgtgagtgatgaagggggaaattggagtgccgggcagcgccagctattttgccttggaagagtgcttctcaagaggaacaggattctagttctagatgaggctactgcttccattgattctgcaacagatgccattctacaaaaagaatcatcaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

203

Amino Acids

22.2

Weight (kDa)

6.37

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	22
AclWI	GGATC	2 cut(s)	347, 360
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	68, 230
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	4 cut(s)	82, 295, 409, 496
AluI	AGCT	4 cut(s)	82, 295, 409, 496
AlwI	GGATC	2 cut(s)	347, 360
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	3 cut(s)	44, 59, 361
ApeKI	GCWGC	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	492
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	3
AsuII	TTCGAA	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	484
BfaI	CTAG	6 cut(s)	147, 359, 395, 539, 545, 610
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	493
BisI	GCNGC	1 cut(s)	488
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	489
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	2 cut(s)	309, 571
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	296
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	4 cut(s)	98, 294, 395, 506
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	505
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 230
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	68, 230
BseMII	CTCAG	2 cut(s)	6, 310
BseXI	GCAGC	1 cut(s)	499
BshFI	GGCC	3 cut(s)	46, 61, 363
BsiSI	CCGG	2 cut(s)	23, 483
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	68, 230
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	3 cut(s)	46, 61, 363
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	352
Bsp1720I	GCTNAGC	1 cut(s)	296
BspANI	GGCC	3 cut(s)	46, 61, 363
BspCNI	CTCAG	2 cut(s)	7, 309
BspEI	TCCGGA	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	347, 360
BspT104I	TTCGAA	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	190, 421
Bst6I	CTCTTC	1 cut(s)	505
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	15, 296
BstF5I	GGATG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	493, 581
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	46, 61, 363
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	494
CfoI	GCGC	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	57, 126
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	15, 296
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco130I	CCWWGG	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	2 cut(s)	60, 129
FaiI	YATR	7 cut(s)	58, 65, 127, 197, 245, 367, 385
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	56, 125
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	488
FspBI	CTAG	6 cut(s)	147, 359, 395, 539, 545, 610
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	3 cut(s)	46, 61, 363
HapII	CCGG	2 cut(s)	23, 483
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	60, 129
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	5 cut(s)	120, 446, 535, 569, 599
HpaII	CCGG	2 cut(s)	23, 483
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	2 cut(s)	93, 373
Hpy188III	TCNNGA	6 cut(s)	23, 311, 395, 443, 523, 545
HpyAV	CCTTC	5 cut(s)	60, 61, 134, 159, 458
HpyCH4III	ACNGT	2 cut(s)	190, 421
HpyCH4V	TGCA	3 cut(s)	4, 129, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	493, 581
HpyF3I	CTNAG	2 cut(s)	15, 296
Hsp92II	CATG	2 cut(s)	60, 129
HspAI	GCGC	1 cut(s)	490
Kpn2I	TCCGGA	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	352
LpnPI	CCDG	9 cut(s)	27, 36, 156, 313, 428, 496, 506, 517, 591
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	309, 571
MaeI	CTAG	6 cut(s)	147, 359, 395, 539, 545, 610
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	45, 253, 522
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	27, 237, 436, 472
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	7 cut(s)	28, 30, 318, 366, 381, 519, 544
MroI	TCCGGA	1 cut(s)	22
MspI	CCGG	2 cut(s)	23, 483
MspR9I	CCNGG	1 cut(s)	484
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	493, 581
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	60, 129
NlaIV	GGNNCC	1 cut(s)	354
NspI	RCATGY	1 cut(s)	129
NspV	TTCGAA	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	363
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	120, 535, 569, 599
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	7 cut(s)	16, 52, 84, 297, 411, 436, 498
SfaNI	GCATC	2 cut(s)	309, 571
SfcI	CTRYAG	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	340
SmlI	CTYRAG	4 cut(s)	113, 309, 410, 521
SmoI	CTYRAG	4 cut(s)	113, 309, 410, 521
Sse9I	AATT	4 cut(s)	27, 237, 436, 472
SseBI	AGGCCT	1 cut(s)	363
SspMI	CTAG	6 cut(s)	147, 359, 395, 539, 545, 610
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	190, 421
TaqI	TCGA	1 cut(s)	340
TasI	AATT	4 cut(s)	27, 237, 436, 472
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	120, 535, 569, 599
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	5 cut(s)	45, 80, 305, 393, 477
TspRI	CASTG	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	230
XbaI	TCTAGA	2 cut(s)	394, 544
XceI	RCATGY	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	6 cut(s)	147, 359, 395, 539, 545, 610
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.