pycom06g09440

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000900
Physical Location & Seq
Reverse (-)
14753999 .. 14755096
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09440.3

Sequence Viewer

Length: 804 bp
ATGAAACTTATGCAGGTAAGATATAGGCCAAGTGCTCCGCTAGTTCTTCATGGGATAAATTGCACAATTGAAGGAGGCGACAAAATTGGTATTGTTGGCCGGACTGGAAGTGGGAAGACTACTCTTATTAGCATTTTGTTTCGTCTGGTAGAGCCTACAGAAGGAAAGGTCATAGTGGATGACTATGACATTTGCACAATTGGACTTCATGATTTAAGATCATGTTTTGGGATCATACCACAAGATCTGACTCTGTTCAGTGGATCTGTGAGATTCAATTTAGACCCCTTATCAGAGTATACCGATCATCAAATATGGGAAGTTCTTGAGAAATGTCAGTTGCGAGAGGCCGTTCAAGAAAAGGAAGATGGCCTTGATTCTTCAGGTAATAAACTCAGTCTGTCTCAGAGGAGTGCTTTTTGGTCAGTTGTACAAGATGGAACAAACTGGAGCATGGGACAACGACAACTATTCTGTTTGGGACGTGCTTTGTTGAAGAGGAGCCGAATACTGGTGCTCGATGAAGCCACTGCATTAATGGACAATACAACAGACGCTATTCTGCAGAAAACTATTAGAACAGAATTTGCATACTGCACTGTAATAACCGTGGCTCATAGGATACCAACCGTGATGGACTGTACAAAAGTGCTTGCTATTAGTGATGGGAGAGTGGTGGAGTATGATGAGCCAAAGAAGCTGATGAGGAATGAGGGCTCACTATTTGGGCAGCTAGTCAAGGAATATTGGTCTCGTGCTGGTGCTGCTAATGCCGGCATCCACTCAGAAGATAGAATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

268

Amino Acids

29.83

Weight (kDa)

6.0

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 38
AclWI GGATC 2 cut(s) 239, 271
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 2 cut(s) 432, 643
AfiI CCNNNNNNNGG 2 cut(s) 161, 511
AgsI TTSAA 4 cut(s) 71, 277, 356, 496
AjiI CACGTC 1 cut(s) 485
AluBI AGCT 2 cut(s) 700, 733
AluI AGCT 2 cut(s) 700, 733
Alw21I GWGCWC 2 cut(s) 37, 519
Alw26I GTCTC 2 cut(s) 408, 756
AlwI GGATC 2 cut(s) 239, 271
AoxI GGCC 4 cut(s) 26, 97, 348, 370
ApeKI GCWGC 2 cut(s) 730, 764
ApoI RAATTY 1 cut(s) 584
AseI ATTAAT 1 cut(s) 536
BanII GRGCYC 1 cut(s) 719
BauI CACGAG 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 37, 519
BbvI GCAGC 2 cut(s) 742, 751
BccI CCATC 4 cut(s) 362, 431, 628, 659
BceAI ACGGC 1 cut(s) 335
BciVI GTATCC 1 cut(s) 615
BcoDI GTCTC 2 cut(s) 408, 756
BfaI CTAG 2 cut(s) 41, 734
BfmI CTRYAG 2 cut(s) 156, 563
BfuAI ACCTGC 1 cut(s) 4
BfuI GTATCC 1 cut(s) 615
BglII AGATCT 1 cut(s) 244
BisI GCNGC 2 cut(s) 731, 765
BlsI GCNGC 2 cut(s) 732, 766
BmgBI CACGTC 1 cut(s) 485
BmiI GGNNCC 1 cut(s) 503
BmsI GCATC 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 1 cut(s) 609
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 511
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 3 cut(s) 109, 452, 516
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 2 cut(s) 184, 777
BseLI CCNNNNNNNGG 2 cut(s) 161, 511
BseMII CTCAG 3 cut(s) 409, 419, 798
BseNI ACTGG 3 cut(s) 109, 452, 516
BseRI GAGGAG 2 cut(s) 424, 514
BseXI GCAGC 2 cut(s) 742, 751
BsgI GTGCAG 1 cut(s) 580
BshFI GGCC 4 cut(s) 28, 99, 350, 372
BsiHKAI GWGCWC 2 cut(s) 37, 519
BsiSI CCGG 2 cut(s) 100, 774
BslFI GGGAC 2 cut(s) 471, 495
BslI CCNNNNNNNGG 2 cut(s) 161, 511
BsmAI GTCTC 2 cut(s) 408, 756
BsmFI GGGAC 2 cut(s) 471, 495
BsnI GGCC 4 cut(s) 28, 99, 350, 372
Bso31I GGTCTC 1 cut(s) 756
Bsp1286I GDGCHC 3 cut(s) 37, 519, 719
Bsp1407I TGTACA 2 cut(s) 430, 641
Bsp143I GATC 5 cut(s) 218, 231, 244, 263, 304
BspACI CCGC 1 cut(s) 38
BspANI GGCC 4 cut(s) 28, 99, 350, 372
BspCNI CTCAG 3 cut(s) 408, 418, 797
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 503
BspMAI CTGCAG 1 cut(s) 567
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 2 cut(s) 239, 271
BspTNI GGTCTC 1 cut(s) 756
BsrFI RCCGGY 1 cut(s) 773
BsrGI TGTACA 2 cut(s) 430, 641
BsrI ACTGG 3 cut(s) 109, 452, 516
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 5 cut(s) 218, 231, 244, 263, 304
BssNAI GTATAC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 753
Bst1107I GTATAC 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 753
Bst4CI ACNGT 4 cut(s) 601, 610, 631, 641
Bst6I CTCTTC 1 cut(s) 491
BstAUI TGTACA 2 cut(s) 430, 641
BstC8I GCNNGC 2 cut(s) 654, 775
BstDEI CTNAG 3 cut(s) 395, 405, 784
BstDSI CCRYGG 1 cut(s) 609
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 184, 777
BstKTI GATC 5 cut(s) 221, 234, 247, 266, 307
BstMAI GTCTC 2 cut(s) 408, 756
BstMBI GATC 5 cut(s) 218, 231, 244, 263, 304
BstMWI GCNNNNNNNGC 3 cut(s) 697, 764, 770
BstSFI CTRYAG 2 cut(s) 156, 563
BstV1I GCAGC 2 cut(s) 742, 751
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 244, 263
BstYI RGATCY 2 cut(s) 244, 263
BstZ17I GTATAC 1 cut(s) 300
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 4 cut(s) 28, 99, 350, 372
BtgI CCRYGG 1 cut(s) 609
BtrI CACGTC 1 cut(s) 485
BtsCI GGATG 2 cut(s) 184, 777
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 3 cut(s) 265, 528, 597
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 654, 775
CciI TCATGA 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 773
CseI GACGC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 431, 642
CviAII CATG 4 cut(s) 50, 209, 222, 454
CviQI GTAC 2 cut(s) 431, 642
DdeI CTNAG 3 cut(s) 395, 405, 784
DpnI GATC 5 cut(s) 220, 233, 246, 265, 306
DpnII GATC 5 cut(s) 218, 231, 244, 263, 304
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 366
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 719
FaeI CATG 4 cut(s) 53, 212, 225, 457
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 2 cut(s) 471, 495
FatI CATG 4 cut(s) 49, 208, 221, 453
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 731, 765
FokI GGATG 2 cut(s) 191, 764
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 2 cut(s) 731, 765
FspBI CTAG 2 cut(s) 41, 734
GluI GCNGC 2 cut(s) 731, 765
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 4 cut(s) 28, 99, 350, 372
HapII CCGG 2 cut(s) 100, 774
HgaI GACGC 1 cut(s) 563
Hin1II CATG 4 cut(s) 53, 212, 225, 457
HinfI GANTC 4 cut(s) 250, 273, 377, 795
HpaII CCGG 2 cut(s) 100, 774
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 4 cut(s) 249, 295, 408, 787
Hpy188III TCNNGA 3 cut(s) 209, 326, 356
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 65, 155
HpyCH4III ACNGT 4 cut(s) 601, 610, 631, 641
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 7 cut(s) 13, 63, 195, 533, 565, 590, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 697, 764, 770
HpyF3I CTNAG 3 cut(s) 395, 405, 784
HpySE526I ACGT 1 cut(s) 484
Hsp92II CATG 4 cut(s) 53, 212, 225, 457
KroI GCCGGC 1 cut(s) 773
KroNI GCCGGC 1 cut(s) 775
Kzo9I GATC 5 cut(s) 218, 231, 244, 263, 304
LmnI GCTCC 3 cut(s) 40, 450, 501
LpnPI CCDG 8 cut(s) 90, 113, 131, 369, 433, 497, 744, 787
Lsp1109I GCAGC 2 cut(s) 742, 751
LweI GCATC 1 cut(s) 786
MaeI CTAG 2 cut(s) 41, 734
MaeII ACGT 1 cut(s) 484
MalI GATC 5 cut(s) 220, 233, 246, 265, 306
MboI GATC 5 cut(s) 218, 231, 244, 263, 304
MboII GAAGA 6 cut(s) 38, 127, 372, 377, 508, 800
MfeI CAATTG 2 cut(s) 66, 198
MflI RGATCY 2 cut(s) 244, 263
MhlI GDGCHC 3 cut(s) 37, 519, 719
MluCI AATT 7 cut(s) 58, 66, 84, 198, 277, 584, 799
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 6 cut(s) 68, 340, 402, 492, 699, 706
MroNI GCCGGC 1 cut(s) 773
MseI TTAA 3 cut(s) 215, 536, 802
MspI CCGG 2 cut(s) 100, 774
MunI CAATTG 2 cut(s) 66, 198
MwoI GCNNNNNNNGC 3 cut(s) 697, 764, 770
NaeI GCCGGC 1 cut(s) 775
NdeII GATC 5 cut(s) 218, 231, 244, 263, 304
NgoMIV GCCGGC 1 cut(s) 773
NlaIII CATG 4 cut(s) 53, 212, 225, 457
NlaIV GGNNCC 1 cut(s) 503
PagI TCATGA 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 775
PfeI GAWTC 3 cut(s) 273, 377, 795
PkrI GCNGC 2 cut(s) 732, 766
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 536
PspN4I GGNNCC 1 cut(s) 503
PstI CTGCAG 1 cut(s) 567
PsuI RGATCY 2 cut(s) 244, 263
RsaI GTAC 2 cut(s) 432, 643
RsaNI GTAC 2 cut(s) 431, 642
SaqAI TTAA 3 cut(s) 215, 536, 802
SatI GCNGC 2 cut(s) 731, 765
Sau3AI GATC 5 cut(s) 218, 231, 244, 263, 304
SchI GAGTC 1 cut(s) 244
SduI GDGCHC 3 cut(s) 37, 519, 719
SetI ASST 6 cut(s) 18, 171, 388, 487, 702, 735
SfaNI GCATC 1 cut(s) 786
SfcI CTRYAG 2 cut(s) 156, 563
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 7 cut(s) 58, 66, 84, 198, 277, 584, 799
SsiI CCGC 1 cut(s) 38
SspI AATATT 1 cut(s) 746
SspMI CTAG 2 cut(s) 41, 734
TaaI ACNGT 4 cut(s) 601, 610, 631, 641
TaiI ACGT 1 cut(s) 487
TaqI TCGA 1 cut(s) 519
TasI AATT 7 cut(s) 58, 66, 84, 198, 277, 584, 799
TatI WGTACW 2 cut(s) 430, 641
TfiI GAWTC 3 cut(s) 273, 377, 795
Tru1I TTAA 3 cut(s) 215, 536, 802
Tru9I TTAA 3 cut(s) 215, 536, 802
TscAI CASTG 3 cut(s) 265, 535, 604
TseI GCWGC 2 cut(s) 730, 764
TspDTI ATGAA 4 cut(s) 17, 38, 197, 537
TspRI CASTG 3 cut(s) 265, 535, 604
VspI ATTAAT 1 cut(s) 536
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 2 cut(s) 41, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.