RCHIOBHM_CHR0C20G0500301

ABC transporter C family member

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1692 bp
ATGATTTTGGTTACTAGCTATTGGAAAGAAGCAGTCCTCAACTTGATTTTATCATGTGTGACAGATTTCCGGCTTGAATTTCAGACAGAATGGCTCCAGCAAAACTTTCCCTGCTTGTATGAGCACATCAGCATAGTTATGCAACTTAGTTTCCTTGGCATCTTAGTACTGCATTTTTTACAAAAAATCATGGGTCAAATATGCAAACAAAGAACTACGTTCACAGACCAAAGCACGGAGAACAATGGCACTGGCATTGGCACGCAATTCAGTACCCTTTACAAGACTACAATAGCTTGTTGCCTTTTACTGATGGGTACTCATTTCATAGTGGTGCTGTTGCTGGTAAATGGAAGTTTTACATACTGCAATCATAAAGTTCCCACATTTTCATCAGAGGGCATGCAAGTGGTATCATGGGCACTATCATCAGTTGCAGTATACCGGCTTGTGAATATCAAGTCTATCAAGTTCCCTTGGCTATTAAGAGCATGGTGGCTTTGCAGCTTTATCTTGTCCATCATCTCTGTGGCTGTTGATACATATTTCCAAATCACATACCATGGCCAGCTTCGATTACAAGATTATTCTGACTTCCTGAGTCTCCTTGCATCCACCTGCCTGTTTGGTATTTCAATACAAGGGAAGACAGGACTAACCTCTACCGTCCCAGATAGCATCACCGAACCACTTCTCAGTGGAAAAGGTGATAAACATACAGAAGGAAGACAACAATCTCCATATGGAAAAGCTACTCTTCTCCAACTCATCACATTCTCTTGGCTCAACCCCTTGTTTTCTCTTGGAATCAAGAAACCCCTAGACCAGGAAGAAGTCCCAGCTCTTGACATCAAAGACTCAGCTGAATATCTGTCTCACTCATATGATGAGAGACTAAAACATGTTAAGGAGAGAGATGGAACCACAAACCCAGAAATCTACAAGACAATTTATTTATTTATCAGGAAGAAAGCAGCAATTAATGCTATGTTTGCTGCATTATATGCTGTAGCATCATATGTTGGACCATATCTCATTAATGACTTCGTAAACTTTTTGACAGAGAAGAAAACTCGAAGCTCAGGGAGTGGCTACATTCTTGCAGTTGCCTTTCTAGGAGCCAAGATGGTTGAAACGATTGCACAGAGGCAATGGATATTTGGGGCAAGACAGCTAGGCCTTCGCCTTAGAGCTGCTCTGATATCTCAAATTTTCAAGAAAGGCTTACATCTATCAAGCCAATCCCACCAAAGCCACAACAGCGGAGAGGTCATCAACTATATGAGTGTAGATATCCAAAGAATCACAGACTTCATTTGGTACTTAAACATAATATGGATGATGCCTATTCAAATTTCCTTGGCAATCTATATCCTTCACACGAATCTAGGCATGGGTTCCTTCGGCGCATTAGTAGCAACTTTTGGAGTACTGCTTTGCAATATCCCAATGACTAATCTTCAGAAAAGATACCAGTCTAGGATCATGGAAGCCAAGGACAACAGGATGAAAGCCACTACAGAGATTCTTCGAAGCATGAAGACCATCAAACTTCAGGCATGGGACAGTCAATTCCTTCACAAGTTAGAAAGCTTGAGGAAAATAGAGTACGACTGGCTATGGAAGTCACTAAGACTGTTTGCAATTGGCTCTACTGTCTTTTGGGAGCACCCTCATTTATCTCAGTGGTGA

Protein Analysis

563

Amino Acids

64.31

Weight (kDa)

9.15

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 441
AciI CCGC 1 cut(s) 1263
AclWI GGATC 1 cut(s) 1490
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 3 cut(s) 77, 1209, 1353
AcuI CTGAAG 2 cut(s) 1445, 1538
AfaI GTAC 6 cut(s) 168, 274, 319, 1322, 1431, 1610
AfiI CCNNNNNNNGG 2 cut(s) 235, 826
AflIII ACRYGT 1 cut(s) 901
AgsI TTSAA 5 cut(s) 77, 636, 1133, 1216, 1352
AjnI CCWGG 1 cut(s) 825
Alw21I GWGCWC 2 cut(s) 126, 1671
Alw26I GTCTC 3 cut(s) 608, 879, 886
AlwI GGATC 1 cut(s) 1490
AoxI GGCC 2 cut(s) 565, 1177
ApeKI GCWGC 4 cut(s) 504, 974, 995, 1193
ApoI RAATTY 3 cut(s) 77, 1209, 1353
AseI ATTAAT 2 cut(s) 981, 1038
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 1 cut(s) 1409
AspS9I GGNCC 1 cut(s) 1025
AsuHPI GGTGA 2 cut(s) 673, 719
AsuII TTCGAA 1 cut(s) 1531
AvaII GGWCC 1 cut(s) 1025
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 567
BbsI GAAGAC 3 cut(s) 653, 733, 1547
Bbv12I GWGCWC 2 cut(s) 126, 1671
BbvI GCAGC 4 cut(s) 516, 982, 986, 1180
BccI CCATC 5 cut(s) 307, 527, 911, 1120, 1553
BciT130I CCWGG 1 cut(s) 827
BcoDI GTCTC 3 cut(s) 608, 879, 886
BfaI CTAG 6 cut(s) 15, 821, 1115, 1175, 1388, 1479
BfmI CTRYAG 2 cut(s) 1008, 1518
BfuAI ACCTGC 1 cut(s) 626
BisI GCNGC 4 cut(s) 505, 975, 996, 1194
BlsI GCNGC 4 cut(s) 506, 976, 997, 1195
BmcAI AGTACT 2 cut(s) 168, 1431
Bme1390I CCNGG 1 cut(s) 827
Bme18I GGWCC 1 cut(s) 1025
BmgT120I GGNCC 1 cut(s) 1025
BmiI GGNNCC 4 cut(s) 95, 922, 1120, 1399
BmrFI CCNGG 1 cut(s) 827
BmsI GCATC 5 cut(s) 168, 620, 687, 1022, 1332
BpiI GAAGAC 3 cut(s) 653, 733, 1547
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 1081
Bpu14I TTCGAA 1 cut(s) 1531
BpuEI CTTGAG 1 cut(s) 1615
BsaJI CCNNGG 5 cut(s) 154, 476, 562, 1359, 1494
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 826
Bse118I RCCGGY 1 cut(s) 444
Bse1I ACTGG 3 cut(s) 256, 1474, 1619
Bse3DI GCAATG 1 cut(s) 1157
BseBI CCWGG 1 cut(s) 827
BseDI CCNNGG 5 cut(s) 154, 476, 562, 1359, 1494
BseGI GGATG 3 cut(s) 611, 1344, 1512
BseLI CCNNNNNNNGG 2 cut(s) 235, 826
BseMI GCAATG 1 cut(s) 1157
BseMII CTCAG 4 cut(s) 590, 709, 873, 1095
BseNI ACTGG 3 cut(s) 256, 1474, 1619
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 4 cut(s) 516, 982, 986, 1180
BseYI CCCAGC 1 cut(s) 838
BshFI GGCC 2 cut(s) 567, 1179
BsiHKAI GWGCWC 2 cut(s) 126, 1671
BsiSI CCGG 2 cut(s) 70, 445
BslFI GGGAC 3 cut(s) 653, 821, 1577
BslI CCNNNNNNNGG 2 cut(s) 235, 826
BsmAI GTCTC 3 cut(s) 608, 879, 886
BsmFI GGGAC 3 cut(s) 653, 821, 1577
BsnI GGCC 2 cut(s) 567, 1179
Bsp119I TTCGAA 1 cut(s) 1531
Bsp1286I GDGCHC 3 cut(s) 126, 424, 1671
Bsp143I GATC 1 cut(s) 1482
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 1 cut(s) 1263
BspANI GGCC 2 cut(s) 567, 1179
BspCNI CTCAG 4 cut(s) 591, 708, 872, 1094
BspLI GGNNCC 4 cut(s) 95, 922, 1120, 1399
BspMI ACCTGC 1 cut(s) 626
BspPI GGATC 1 cut(s) 1490
BspT104I TTCGAA 1 cut(s) 1531
BsrDI GCAATG 1 cut(s) 1157
BsrFI RCCGGY 1 cut(s) 444
BsrI ACTGG 3 cut(s) 256, 1474, 1619
BssAI RCCGGY 1 cut(s) 444
BssECI CCNNGG 5 cut(s) 154, 476, 562, 1359, 1494
BssMI GATC 1 cut(s) 1482
BssNAI GTATAC 1 cut(s) 442
BssT1I CCWWGG 5 cut(s) 154, 476, 562, 1359, 1494
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 4 cut(s) 667, 1568, 1638, 1657
Bst6I CTCTTC 1 cut(s) 762
BstAPI GCANNNNNTGC 2 cut(s) 983, 1004
BstBI TTCGAA 1 cut(s) 1531
BstC8I GCNNGC 3 cut(s) 263, 404, 569
BstDEI CTNAG 9 cut(s) 146, 163, 599, 695, 859, 1081, 1187, 1631, 1683
BstDSI CCRYGG 1 cut(s) 562
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 3 cut(s) 611, 1344, 1512
BstHHI GCGC 1 cut(s) 1409
BstKTI GATC 1 cut(s) 1485
BstMAI GTCTC 3 cut(s) 608, 879, 886
BstMBI GATC 1 cut(s) 1482
BstMWI GCNNNNNNNGC 5 cut(s) 983, 992, 1004, 1260, 1415
BstNI CCWGG 1 cut(s) 827
BstNSI RCATGY 2 cut(s) 406, 905
BstSCI CCNGG 1 cut(s) 825
BstSFI CTRYAG 2 cut(s) 1008, 1518
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 4 cut(s) 516, 982, 986, 1180
BstV2I GAAGAC 3 cut(s) 653, 733, 1547
BstZ17I GTATAC 1 cut(s) 442
BsuRI GGCC 2 cut(s) 567, 1179
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 3 cut(s) 611, 1344, 1512
BtsIMutI CAGTG 3 cut(s) 249, 703, 1691
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 3 cut(s) 263, 404, 569
CfoI GCGC 1 cut(s) 1409
Cfr10I RCCGGY 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 1025
Csp6I GTAC 6 cut(s) 167, 273, 318, 1321, 1430, 1609
CviQI GTAC 6 cut(s) 167, 273, 318, 1321, 1430, 1609
DdeI CTNAG 9 cut(s) 146, 163, 599, 695, 859, 1081, 1187, 1631, 1683
DpnI GATC 1 cut(s) 1484
DpnII GATC 1 cut(s) 1482
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
Eco130I CCWWGG 5 cut(s) 154, 476, 562, 1359, 1494
Eco147I AGGCCT 1 cut(s) 1179
Eco32I GATATC 2 cut(s) 1203, 1294
Eco47I GGWCC 1 cut(s) 1025
Eco57I CTGAAG 2 cut(s) 1445, 1538
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 825
EcoRV GATATC 2 cut(s) 1203, 1294
EcoT14I CCWWGG 5 cut(s) 154, 476, 562, 1359, 1494
ErhI CCWWGG 5 cut(s) 154, 476, 562, 1359, 1494
FalI AAGNNNNNCTT 4 cut(s) 741, 773, 1208, 1240
FaqI GGGAC 3 cut(s) 653, 821, 1577
FauNDI CATATG 3 cut(s) 742, 883, 1018
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 505, 975, 996, 1194
FokI GGATG 3 cut(s) 598, 1351, 1519
Fsp4HI GCNGC 4 cut(s) 505, 975, 996, 1194
FspBI CTAG 6 cut(s) 15, 821, 1115, 1175, 1388, 1479
GlaI GCGC 1 cut(s) 1408
GluI GCNGC 4 cut(s) 505, 975, 996, 1194
GsaI CCCAGC 1 cut(s) 842
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 2 cut(s) 567, 1179
HapII CCGG 2 cut(s) 70, 445
HhaI GCGC 1 cut(s) 1409
Hin6I GCGC 1 cut(s) 1407
HinP1I GCGC 1 cut(s) 1407
HindIII AAGCTT 1 cut(s) 1591
HinfI GANTC 6 cut(s) 601, 807, 857, 1302, 1384, 1525
HpaII CCGG 2 cut(s) 70, 445
HphI GGTGA 2 cut(s) 673, 719
Hpy166II GTNNAC 3 cut(s) 222, 442, 1051
Hpy188I TCNGA 5 cut(s) 84, 397, 592, 1200, 1464
Hpy188III TCNNGA 5 cut(s) 598, 811, 845, 964, 1216
Hpy8I GTNNAC 3 cut(s) 222, 442, 1051
HpyAV CCTTC 5 cut(s) 716, 1190, 1385, 1411, 1586
HpyCH4III ACNGT 4 cut(s) 667, 1568, 1638, 1657
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 5 cut(s) 983, 992, 1004, 1260, 1415
HpyF3I CTNAG 9 cut(s) 146, 163, 599, 695, 859, 1081, 1187, 1631, 1683
HpySE526I ACGT 1 cut(s) 218
HspAI GCGC 1 cut(s) 1407
Kzo9I GATC 1 cut(s) 1482
LmnI GCTCC 3 cut(s) 99, 1118, 1666
Lsp1109I GCAGC 4 cut(s) 516, 982, 986, 1180
LweI GCATC 5 cut(s) 168, 620, 687, 1022, 1332
MaeI CTAG 6 cut(s) 15, 821, 1115, 1175, 1388, 1479
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 10, 58, 1626
MalI GATC 1 cut(s) 1484
MboI GATC 1 cut(s) 1482
MboII GAAGA 9 cut(s) 658, 738, 749, 842, 979, 1078, 1451, 1520, 1552
MfeI CAATTG 1 cut(s) 1644
MhlI GDGCHC 3 cut(s) 126, 424, 1671
MlsI TGGCCA 1 cut(s) 567
MluCI AATT 8 cut(s) 77, 266, 948, 978, 1209, 1353, 1571, 1644
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 2 cut(s) 610, 851
MmeI TCCRAC 2 cut(s) 787, 1003
MnlI CCTC 7 cut(s) 47, 391, 670, 1140, 1261, 1590, 1683
Mox20I TGGCCA 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 690
MscI TGGCCA 1 cut(s) 567
MseI TTAA 5 cut(s) 485, 906, 981, 1038, 1325
MslI CAYNNNNRTG 5 cut(s) 137, 332, 407, 527, 882
Msp20I TGGCCA 1 cut(s) 567
MspA1I CMGCKG 2 cut(s) 863, 1263
MspI CCGG 2 cut(s) 70, 445
MspR9I CCNGG 1 cut(s) 827
MunI CAATTG 1 cut(s) 1644
MvaI CCWGG 1 cut(s) 827
MwoI GCNNNNNNNGC 5 cut(s) 983, 992, 1004, 1260, 1415
NcoI CCATGG 1 cut(s) 562
NdeI CATATG 3 cut(s) 742, 883, 1018
NdeII GATC 1 cut(s) 1482
NlaIV GGNNCC 4 cut(s) 95, 922, 1120, 1399
NmuCI GTSAC 2 cut(s) 58, 1626
NspI RCATGY 2 cut(s) 406, 905
NspV TTCGAA 1 cut(s) 1531
PaeI GCATGC 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 626
PceI AGGCCT 1 cut(s) 1179
PciI ACATGT 1 cut(s) 901
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 4 cut(s) 807, 1302, 1384, 1525
PkrI GCNGC 4 cut(s) 506, 976, 997, 1195
PleI GAGTC 2 cut(s) 609, 851
PpsI GAGTC 2 cut(s) 609, 851
PscI ACATGT 1 cut(s) 901
PshBI ATTAAT 2 cut(s) 981, 1038
Psp6I CCWGG 1 cut(s) 825
PspFI CCCAGC 1 cut(s) 838
PspGI CCWGG 1 cut(s) 825
PspN4I GGNNCC 4 cut(s) 95, 922, 1120, 1399
PspPI GGNCC 1 cut(s) 1025
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 6 cut(s) 168, 274, 319, 1322, 1431, 1610
RsaNI GTAC 6 cut(s) 167, 273, 318, 1321, 1430, 1609
RseI CAYNNNNRTG 5 cut(s) 137, 332, 407, 527, 882
SaqAI TTAA 5 cut(s) 485, 906, 981, 1038, 1325
SatI GCNGC 4 cut(s) 505, 975, 996, 1194
Sau3AI GATC 1 cut(s) 1482
Sau96I GGNCC 1 cut(s) 1025
ScaI AGTACT 2 cut(s) 168, 1431
SchI GAGTC 2 cut(s) 610, 851
ScrFI CCNGG 1 cut(s) 827
SduI GDGCHC 3 cut(s) 126, 424, 1671
SfaNI GCATC 5 cut(s) 168, 620, 687, 1022, 1332
SfcI CTRYAG 2 cut(s) 1008, 1518
SfuI TTCGAA 1 cut(s) 1531
SinI GGWCC 1 cut(s) 1025
SmiMI CAYNNNNRTG 5 cut(s) 137, 332, 407, 527, 882
SmlI CTYRAG 1 cut(s) 1594
SmoI CTYRAG 1 cut(s) 1594
SphI GCATGC 1 cut(s) 406
Sse9I AATT 8 cut(s) 77, 266, 948, 978, 1209, 1353, 1571, 1644
SseBI AGGCCT 1 cut(s) 1179
SsiI CCGC 1 cut(s) 1263
SspMI CTAG 6 cut(s) 15, 821, 1115, 1175, 1388, 1479
StuI AGGCCT 1 cut(s) 1179
StyD4I CCNGG 1 cut(s) 825
StyI CCWWGG 5 cut(s) 154, 476, 562, 1359, 1494
TaaI ACNGT 4 cut(s) 667, 1568, 1638, 1657
TaiI ACGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 574, 1075, 1531
TasI AATT 8 cut(s) 77, 266, 948, 978, 1209, 1353, 1571, 1644
TatI WGTACW 2 cut(s) 166, 1429
TfiI GAWTC 4 cut(s) 807, 1302, 1384, 1525
Tru1I TTAA 5 cut(s) 485, 906, 981, 1038, 1325
Tru9I TTAA 5 cut(s) 485, 906, 981, 1038, 1325
TscAI CASTG 3 cut(s) 256, 703, 1691
TseFI GTSAC 2 cut(s) 58, 1626
TseI GCWGC 4 cut(s) 504, 974, 995, 1193
Tsp45I GTSAC 2 cut(s) 58, 1626
TspDTI ATGAA 5 cut(s) 316, 381, 1303, 1523, 1553
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 3 cut(s) 256, 703, 1691
VpaK11BI GGWCC 1 cut(s) 1025
VspI ATTAAT 2 cut(s) 981, 1038
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 3 cut(s) 77, 1209, 1353
XceI RCATGY 2 cut(s) 406, 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 6 cut(s) 15, 821, 1115, 1175, 1388, 1479
ZrmI AGTACT 2 cut(s) 168, 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.