Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

3638584 .. 3641966

Gene Structure 3383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G051700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCAGATTTCACCAGAGCCTCCAGAAATTGTGGAGGACAAGAGGCCACCATCTTCATGGCCTAACAAGGGTAGGATAGAGCTGTATTCTCTGAGGATAAAATATCGTGCAAATGCTCCTCTAGTTCTGAAGGGAATCACATGCACATTCAAAGGAGGAACTAGAGTAGGAGTTGTGGGAAGAACAGGAAGTGGAAAAACTACACTCATAAGTGCTTTGTTTCGCTTAGTAGAGCCGGTGAGTGGTACAATTACTAAAGACGGCATTGACATCTGCTCTCTAGGTCTAAAAGATTTGAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACTCTTTTCAGGGGTAGCATCCGAACCAACTTGGATCCTCTAGGCCTTTACTCCGATGACGAAATATGGAGAGCTCTAGAGAAGTGTCAGCTCAAGGCAACAGTCAGTAGCCTACCTAATCTTCTAGACTCATCTGTAAGTGATGAAGGGGAAAATTGGAGCGCGGGACAACGCCAGCTCTTTTGCCTTGGCAGAGTCCTTCTCAAGAGGAACAGAATTCTAGTTCTAGACGAGGCTACGGCGTCCATTGATTCTTCGACAGATGCCGTTCTGCAGAGAATCATCAGGCAGGAATTTGCAGAATGCACAGTGATAACTGTAGCTCACAGAGTTCCAACCGTTATAGACAGTGACATGGTCATGGTCCTCTCCTATGGGAAGCTGGTGGAGTATGAAGAGCCTTCAAAGCTCTTGGATACCAACTCCTACTTCTCCAAGCTTGTAGCTGAATATTGGTCAAGTTGCAGGAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

269

Amino Acids

29.84

Weight (kDa)

8.48

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	2 cut(s)	359, 372
AcsI	RAATTY	2 cut(s)	546, 623
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	572
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	68, 242
AgsI	TTSAA	2 cut(s)	151, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	359, 372
AoxI	GGCC	3 cut(s)	44, 59, 373
ApoI	RAATTY	2 cut(s)	546, 623
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	2 cut(s)	3, 250
AvaII	GGWCC	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	406
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	3 cut(s)	277, 581, 585
BciVI	GTATCC	1 cut(s)	739
BfaI	CTAG	8 cut(s)	122, 162, 281, 371, 407, 455, 551, 557
BfmI	CTRYAG	2 cut(s)	602, 648
BfuI	GTATCC	1 cut(s)	739
BlpI	GCTNAGC	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	1 cut(s)	366
BmsI	GCATC	3 cut(s)	321, 357, 583
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
BpmI	CTGGAG	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	3 cut(s)	306, 407, 518
BsaHI	GRCGYC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 242
Bse118I	RCCGGY	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	2 cut(s)	315, 348
BseLI	CCNNNNNNNGG	2 cut(s)	68, 242
BseMII	CTCAG	2 cut(s)	83, 322
BseRI	GAGGAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	3 cut(s)	46, 61, 375
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	68, 242
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	46, 61, 375
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	3 cut(s)	46, 61, 375
BspCNI	CTCAG	2 cut(s)	84, 321
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	2 cut(s)	359, 372
BspQI	GCTCTTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	572
BssT1I	CCWWGG	1 cut(s)	517
Bst4CI	ACNGT	5 cut(s)	433, 640, 649, 670, 680
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	3 cut(s)	92, 226, 308
BstF5I	GGATG	2 cut(s)	315, 348
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	736
BstNSI	RCATGY	1 cut(s)	144
BstSFI	CTRYAG	2 cut(s)	602, 648
BstUI	CGCG	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	46, 61, 375
BtsCI	GGATG	2 cut(s)	315, 348
BtsIMutI	CAGTG	2 cut(s)	645, 685
Cac8I	GCNNGC	1 cut(s)	506
CfoI	GCGC	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	694
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	4 cut(s)	57, 141, 685, 691
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	3 cut(s)	92, 226, 308
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Ecl136II	GAGCTC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	517
Eco147I	AGGCCT	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	60, 144, 688, 694
FaiI	YATR	9 cut(s)	58, 142, 209, 397, 674, 686, 692, 705, 723
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	4 cut(s)	56, 140, 684, 690
FauI	CCCGC	1 cut(s)	487
FokI	GGATG	2 cut(s)	302, 335
FriOI	GRGCYC	1 cut(s)	406
FspBI	CTAG	8 cut(s)	122, 162, 281, 371, 407, 455, 551, 557
GlaI	GCGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	46, 61, 375
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	4 cut(s)	60, 144, 688, 694
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	5 cut(s)	135, 458, 525, 581, 609
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	3, 250
Hpy188I	TCNGA	4 cut(s)	93, 129, 353, 385
Hpy188III	TCNNGA	6 cut(s)	23, 323, 407, 455, 535, 557
HpyAV	CCTTC	4 cut(s)	124, 470, 539, 741
HpyCH4III	ACNGT	5 cut(s)	433, 640, 649, 670, 680
HpyCH4V	TGCA	7 cut(s)	4, 110, 144, 604, 629, 636, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	736
HpyF3I	CTNAG	3 cut(s)	92, 226, 308
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	4 cut(s)	60, 144, 688, 694
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	2 cut(s)	121, 489
LweI	GCATC	3 cut(s)	321, 357, 583
MaeI	CTAG	8 cut(s)	122, 162, 281, 371, 407, 455, 551, 557
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	5 cut(s)	45, 192, 443, 576, 737
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	5 cut(s)	27, 249, 484, 546, 623
MlyI	GAGTC	2 cut(s)	452, 534
MmeI	TCCRAC	1 cut(s)	689
MslI	CAYNNNNRTG	2 cut(s)	55, 689
MspI	CCGG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	638
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	736
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	60, 144, 688, 694
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	680
NspI	RCATGY	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	720
PctI	GAATGC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	135, 581, 609
PflFI	GACNNNGTC	1 cut(s)	686
PleI	GAGTC	2 cut(s)	452, 533
PpsI	GAGTC	2 cut(s)	452, 533
Psp124BI	GAGCTC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	694
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	686
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	2 cut(s)	55, 689
SacI	GAGCTC	1 cut(s)	406
SapI	GCTCTTC	1 cut(s)	720
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	2 cut(s)	452, 534
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	3 cut(s)	321, 357, 583
SfcI	CTRYAG	2 cut(s)	602, 648
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	2 cut(s)	55, 689
SmlI	CTYRAG	3 cut(s)	321, 422, 533
SmoI	CTYRAG	3 cut(s)	321, 422, 533
Sse9I	AATT	5 cut(s)	27, 249, 484, 546, 623
SseBI	AGGCCT	1 cut(s)	375
SsiI	CCGC	1 cut(s)	494
SspI	AATATT	1 cut(s)	782
SspMI	CTAG	8 cut(s)	122, 162, 281, 371, 407, 455, 551, 557
SstI	GAGCTC	1 cut(s)	406
StuI	AGGCCT	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	5 cut(s)	433, 640, 649, 670, 680
TaqI	TCGA	1 cut(s)	587
TasI	AATT	5 cut(s)	27, 249, 484, 546, 623
TfiI	GAWTC	3 cut(s)	135, 581, 609
TscAI	CASTG	2 cut(s)	645, 685
TseFI	GTSAC	1 cut(s)	680
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	4 cut(s)	45, 317, 489, 738
TspRI	CASTG	2 cut(s)	645, 685
Tth111I	GACNNNGTC	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	2 cut(s)	546, 623
XbaI	TCTAGA	3 cut(s)	406, 454, 556
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	8 cut(s)	122, 162, 281, 371, 407, 455, 551, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.