Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Reverse (-)

65724597 .. 65725970

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGATGGCGGCCGATTCAAATTCCGGCGACCCAATCTCCGACTACGGCCGAACCCAGCGGATCGTGCTTCTAATCGACCTAAACCTACTTCTCCATCTCCAAGACCCAACCCCATTTCTCACCTCTCTCCTCCGTCAAAACCCTAACCTCCTTCCCTCCTCTCTCTGCGATGATGATGATCTGCGATCCGGCGACCGGTATGAATTGGAGTGTGGTGAGAAAGAGGCTAGATTGAAATGTGGTTTTTTCGAAAGGGGGATTAGCTCCTCTGATTCGATTGTGCTTGGTTCGGCTCTTCTGTTTATTTTGGATGAAGGATTTCACCCTCACAAAAAAGGGAATGGCATTGGTGCAGGGAATGTGGGTCAATCTCGTCCAAAGATGAACAATGAGTTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCTATTCAGCCTTGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATTGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACTAAGTCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

207

Amino Acids

22.66

Weight (kDa)

5.0

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 61
AclWI	GGATC	3 cut(s)	71, 183, 605
AcoI	YGGCCR	2 cut(s)	12, 49
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgeI	ACCGGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	21, 238
AluBI	AGCT	4 cut(s)	267, 461, 497, 556
AluI	AGCT	4 cut(s)	267, 461, 497, 556
AlwI	GGATC	3 cut(s)	71, 183, 605
AoxI	GGCC	2 cut(s)	12, 49
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	1 cut(s)	22
AsiGI	ACCGGT	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	321
AsuHPI	GGTGA	3 cut(s)	115, 230, 317
AsuII	TTCGAA	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	231, 494
BfmI	CTRYAG	1 cut(s)	557
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	2 cut(s)	12, 498
BlsI	GCNGC	2 cut(s)	13, 499
BmcAI	AGTACT	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	252
BsaBI	GATNNNNATC	2 cut(s)	180, 596
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	198
Bse8I	GATNNNNATC	2 cut(s)	180, 596
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	2 cut(s)	180, 596
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseRI	GAGGAG	3 cut(s)	122, 151, 259
BseX3I	CGGCCG	2 cut(s)	12, 49
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	375
Bsh1285I	CGRYCG	3 cut(s)	15, 52, 199
BshFI	GGCC	2 cut(s)	14, 51
BshTI	ACCGGT	1 cut(s)	198
BsiEI	CGRYCG	3 cut(s)	15, 52, 199
BsiSI	CCGG	3 cut(s)	27, 192, 199
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	2 cut(s)	14, 51
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
BspACI	CCGC	2 cut(s)	11, 61
BspANI	GGCC	2 cut(s)	14, 51
BspPI	GGATC	3 cut(s)	71, 183, 605
BspQI	GCTCTTC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	198
BssMI	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
Bst6I	CTCTTC	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	410, 612
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	6 cut(s)	66, 184, 191, 409, 424, 600
BstMBI	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
BstMCI	CGRYCG	3 cut(s)	15, 52, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 67, 458
BstSFI	CTRYAG	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BstZI	CGGCCG	2 cut(s)	12, 49
BsuRI	GGCC	2 cut(s)	14, 51
BtgZI	GCGATG	2 cut(s)	20, 186
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	491
CspAI	ACCGGT	1 cut(s)	198
CviAII	CATG	1 cut(s)	507
CviJI	RGCY	9 cut(s)	14, 51, 230, 267, 296, 441, 461, 497, 556
CviKI_1	RGCY	9 cut(s)	14, 51, 230, 267, 296, 441, 461, 497, 556
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	410, 612
DpnI	GATC	6 cut(s)	65, 183, 190, 408, 423, 599
DpnII	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
EaeI	YGGCCR	2 cut(s)	12, 49
EagI	CGGCCG	2 cut(s)	12, 49
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EclXI	CGGCCG	2 cut(s)	12, 49
Eco52I	CGGCCG	2 cut(s)	12, 49
FaeI	CATG	1 cut(s)	510
FaiI	YATR	4 cut(s)	204, 467, 508, 530
FatI	CATG	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	12, 498
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	12, 498
FspBI	CTAG	2 cut(s)	231, 494
GluI	GCNGC	2 cut(s)	12, 498
GsaI	CCCAGC	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	14, 51
HapII	CCGG	3 cut(s)	27, 192, 199
Hin1II	CATG	1 cut(s)	510
HinfI	GANTC	2 cut(s)	17, 275
HpaII	CCGG	3 cut(s)	27, 192, 199
HphI	GGTGA	3 cut(s)	115, 230, 317
Hpy188I	TCNGA	3 cut(s)	43, 274, 406
Hpy188III	TCNNGA	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	164, 311
HpyCH4V	TGCA	2 cut(s)	356, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 67, 458
HpyF3I	CTNAG	2 cut(s)	410, 612
Hsp92II	CATG	1 cut(s)	510
Kzo9I	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	2 cut(s)	272, 458
LpnPI	CCDG	7 cut(s)	40, 71, 205, 212, 342, 530, 530
Lsp1109I	GCAGC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	231, 494
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	6 cut(s)	65, 183, 190, 408, 423, 599
MboI	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
MboII	GAAGA	1 cut(s)	290
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	4 cut(s)	22, 206, 534, 549
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	136, 143, 161, 169, 172, 220, 280, 339, 588
MroXI	GAANNNNTTC	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	3 cut(s)	27, 192, 199
MunI	CAATTG	1 cut(s)	534
MwoI	GCNNNNNNNGC	3 cut(s)	11, 67, 458
NdeII	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
NlaIII	CATG	1 cut(s)	510
NspV	TTCGAA	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	17, 275
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	13, 499
PspFI	CCCAGC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	303
SatI	GCNGC	2 cut(s)	12, 498
Sau3AI	GATC	6 cut(s)	63, 181, 188, 406, 421, 597
ScaI	AGTACT	1 cut(s)	492
SetI	ASST	8 cut(s)	84, 90, 128, 153, 269, 463, 499, 558
SfcI	CTRYAG	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	252
Sse9I	AATT	4 cut(s)	22, 206, 534, 549
SsiI	CCGC	2 cut(s)	11, 61
SspI	AATATT	1 cut(s)	566
SspMI	CTAG	2 cut(s)	231, 494
TaqI	TCGA	3 cut(s)	78, 252, 278
TasI	AATT	4 cut(s)	22, 206, 534, 549
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	17, 275
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	219, 330, 390, 401
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	583
XapI	RAATTY	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	231, 494
ZrmI	AGTACT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.