Rroxscaffold_3G00260100

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000900
Physical Location & Seq
Reverse (-)
54494036 .. 54500617
6582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260100.1

Sequence Viewer

Length: 828 bp
ATGCACATTCCTAGCGAAGCCGCAGAAGTAATAGAAGACAACCGACCTGCACAAAATTGGCCTATTGTTGGTAAAGTGGAAATACATGGCTTAGAGGTAAGATATAGGCCAAATTCTCCTTTGGTTCTTCGTGGGATAAATTGCATCATTGAAGGAGGCTACAAAATTGGAATTGTTGGCCGGACTGGAAGTGGAAAGACAACTCTTATCAGCGTTTTGTTTCGTGTGGTAGAGCCTACAGGAGGAAAGGTCATTGTAGATGGCTATGACATTTGCACAATTGGCCTTCATGATTTAAGATCACGTTTTGGGATTATCCCTCAAGATCCGACATTGTTTGGCGGGTCTGTGAGATTCAACCTGGATCCCTTAGCAGAGCATACTGATCATGAAATATGGGAGGTTCTTGAGAAATGTCAGCTACGAGAGGTCATTGGAGAGGAAGAAGGGGGCCTAGATTCTTTAGTTGTGCAAGATGGAACAAACTGGAGCATGGGACAGCGACAACTATTCTGCTTGGGGCGTGCTTTATTGAAGAAAAGCCGAATACTAGTGCTTGATGAAGCCACAGCATCAATGGACAATGCAACAGACTCTATTCTCCAGAAAACTATAAGAACAGAATTTGCAGACTGCACTGTTATAACGGTGGCTCATAGGATACCCACAGTGATGGACTGCACTAAGGTGCTCGCTCTAAGTGATGGTAAAGTAGTAGAGTATGATGAGCCAATGAAGCTGATGAACAATGAGGGATCACTATTCGGGCAGCTTGTCAAGGAATACTGGTCTCGTTCTGCCAATGCTAGCAAGCAGTCAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

275

Amino Acids

30.42

Weight (kDa)

5.18

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 43 - 191 1e-24 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 55
AciI CCGC 2 cut(s) 21, 342
AclWI GGATC 4 cut(s) 320, 359, 372, 763
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 2 cut(s) 112, 623
AfiI CCNNNNNNNGG 2 cut(s) 68, 242
AgsI TTSAA 3 cut(s) 152, 358, 535
AhlI ACTAGT 1 cut(s) 550
AjnI CCWGG 1 cut(s) 360
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 3 cut(s) 421, 739, 772
AluI AGCT 3 cut(s) 421, 739, 772
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 1 cut(s) 795
AlwI GGATC 4 cut(s) 320, 359, 372, 763
AoxI GGCC 5 cut(s) 59, 107, 178, 283, 451
ApeKI GCWGC 1 cut(s) 769
ApoI RAATTY 2 cut(s) 112, 623
AspS9I GGNCC 1 cut(s) 451
AsuNHI GCTAGC 1 cut(s) 806
BamHI GGATCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 1 cut(s) 781
BccI CCATC 4 cut(s) 254, 470, 667, 698
BciT130I CCWGG 1 cut(s) 362
BciVI GTATCC 1 cut(s) 654
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 795
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 4 cut(s) 12, 455, 551, 807
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 2 cut(s) 21, 770
BlsI GCNGC 2 cut(s) 22, 771
Bme1390I CCNGG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 366, 452
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 2 cut(s) 153, 581
BmtI GCTAGC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 2 cut(s) 508, 587
Bpu10I CCTNAGC 1 cut(s) 370
BpuEI CTTGAG 2 cut(s) 306, 428
BsaI GGTCTC 1 cut(s) 795
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 242
Bse1I ACTGG 3 cut(s) 190, 491, 791
BseBI CCWGG 1 cut(s) 362
BseLI CCNNNNNNNGG 2 cut(s) 68, 242
BseNI ACTGG 3 cut(s) 190, 491, 791
BseXI GCAGC 1 cut(s) 781
BsgI GTGCAG 3 cut(s) 33, 619, 664
BshFI GGCC 5 cut(s) 61, 109, 180, 285, 453
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 2 cut(s) 68, 242
BsmAI GTCTC 1 cut(s) 795
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 5 cut(s) 61, 109, 180, 285, 453
Bso31I GGTCTC 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 5 cut(s) 299, 325, 364, 385, 755
BspACI CCGC 2 cut(s) 21, 342
BspANI GGCC 5 cut(s) 61, 109, 180, 285, 453
BspHI TCATGA 2 cut(s) 289, 388
BspLI GGNNCC 2 cut(s) 366, 452
BspMI ACCTGC 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 810
BspPI GGATC 4 cut(s) 320, 359, 372, 763
BspTNI GGTCTC 1 cut(s) 795
BsrI ACTGG 3 cut(s) 190, 491, 791
BssMI GATC 5 cut(s) 299, 325, 364, 385, 755
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 640, 649, 670
BstC8I GCNNGC 4 cut(s) 525, 693, 808, 812
BstDEI CTNAG 4 cut(s) 91, 370, 684, 698
BstENI CCTNNNNNAGG 1 cut(s) 240
BstKTI GATC 5 cut(s) 302, 328, 367, 388, 758
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 5 cut(s) 299, 325, 364, 385, 755
BstMWI GCNNNNNNNGC 2 cut(s) 282, 736
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 781
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 325, 364
BstXI CCANNNNNNTGG 1 cut(s) 673
BstYI RGATCY 2 cut(s) 325, 364
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 5 cut(s) 61, 109, 180, 285, 453
BtsIMutI CAGTG 2 cut(s) 636, 675
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 4 cut(s) 525, 693, 808, 812
CciI TCATGA 2 cut(s) 289, 388
Cfr13I GGNCC 1 cut(s) 451
CviAII CATG 4 cut(s) 86, 290, 389, 493
DdeI CTNAG 4 cut(s) 91, 370, 684, 698
DpnI GATC 5 cut(s) 301, 327, 366, 387, 757
DpnII GATC 5 cut(s) 299, 325, 364, 385, 755
EaeI YGGCCR 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 795
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 360
FaeI CATG 4 cut(s) 89, 293, 392, 496
FaqI GGGAC 1 cut(s) 510
FatI CATG 4 cut(s) 85, 289, 388, 492
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 21, 770
Fsp4HI GCNGC 2 cut(s) 21, 770
FspBI CTAG 4 cut(s) 12, 455, 551, 807
GluI GCNGC 2 cut(s) 21, 770
GsuI CTGGAG 2 cut(s) 508, 587
HaeIII GGCC 5 cut(s) 61, 109, 180, 285, 453
HapII CCGG 1 cut(s) 181
Hin1II CATG 4 cut(s) 89, 293, 392, 496
HinfI GANTC 3 cut(s) 354, 458, 593
HpaII CCGG 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 330, 820
Hpy188III TCNNGA 5 cut(s) 290, 323, 389, 407, 604
HpyAV CCTTC 3 cut(s) 146, 296, 440
HpyCH4III ACNGT 3 cut(s) 640, 649, 670
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 9 cut(s) 4, 50, 144, 276, 472, 587, 629, 636, 681
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 736
HpyF3I CTNAG 4 cut(s) 91, 370, 684, 698
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 4 cut(s) 89, 293, 392, 496
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 299, 325, 364, 385, 755
LmnI GCTCC 1 cut(s) 489
LpnPI CCDG 9 cut(s) 60, 171, 194, 225, 347, 374, 472, 617, 772
Lsp1109I GCAGC 1 cut(s) 781
LweI GCATC 2 cut(s) 153, 581
MaeI CTAG 4 cut(s) 12, 455, 551, 807
MaeII ACGT 1 cut(s) 304
MalI GATC 5 cut(s) 301, 327, 366, 387, 757
MboI GATC 5 cut(s) 299, 325, 364, 385, 755
MboII GAAGA 4 cut(s) 47, 119, 455, 547
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 2 cut(s) 325, 364
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 7 cut(s) 55, 112, 139, 165, 171, 279, 623
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 8 cut(s) 88, 149, 236, 330, 394, 421, 433, 745
MseI TTAA 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 671, 686
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 282, 736
NdeII GATC 5 cut(s) 299, 325, 364, 385, 755
NheI GCTAGC 1 cut(s) 806
NlaIII CATG 4 cut(s) 89, 293, 392, 496
NlaIV GGNNCC 2 cut(s) 366, 452
OliI CACNNNNGTG 1 cut(s) 686
PagI TCATGA 2 cut(s) 289, 388
PfeI GAWTC 2 cut(s) 354, 458
PkrI GCNGC 2 cut(s) 22, 771
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
PsiI TTATAA 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 366, 452
PspPI GGNCC 1 cut(s) 451
PsuI RGATCY 2 cut(s) 325, 364
RseI CAYNNNNRTG 2 cut(s) 671, 686
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 21, 770
Sau3AI GATC 5 cut(s) 299, 325, 364, 385, 755
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 2 cut(s) 153, 581
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 671, 686
SmlI CTYRAG 2 cut(s) 321, 407
SmoI CTYRAG 2 cut(s) 321, 407
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 7 cut(s) 55, 112, 139, 165, 171, 279, 623
SsiI CCGC 2 cut(s) 21, 342
SspMI CTAG 4 cut(s) 12, 455, 551, 807
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 640, 649, 670
TaiI ACGT 1 cut(s) 307
TasI AATT 7 cut(s) 55, 112, 139, 165, 171, 279, 623
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 2 cut(s) 354, 458
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 2 cut(s) 643, 675
TseI GCWGC 1 cut(s) 769
TspDTI ATGAA 5 cut(s) 278, 405, 576, 749, 758
TspRI CASTG 2 cut(s) 643, 675
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 2 cut(s) 112, 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XspI CTAG 4 cut(s) 12, 455, 551, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.