Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000900

Physical Location & Seq

Genomic Coordinates Forward (+)

24483622 .. 24484655

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGCTCAGTATCATCCCTCAAGAACCAACTCTTTTTAGGGGTAGCATCCGAACCAACTTGGATCCTTTAGGCCTTTACTCCGACAATGAAATATGGAGGGCTCTAGAGAAGTGCCAACTACAGGCAACAGTCAATAGCCTACCCAATTTACTAGATTCATCTGGTAAGTTAATATTGTTTGCTGTATGCAAAAGAGAAAAGGGAAAATTGAGCGCCGGGCAGCGCCAGTTGTTTTGCCTTGGAAGAGTGCTTCTCAAGAGGAACAGAATTCTAGTTCTGGATGAGGCTACTGCTTCCATCGACTCTGGAACAGATGCCACTCTACAAAGAATCATCAGGCAGGAATTTGCAGAATGCACTGTGATAACTGTAGCTCATAGAGTTCCAACAGTCATAGACAGTGACAAAGTCATGGTCCTCTCTGATGGAAAGCTGGTGGAGTATGAAGAACCTTCAAAGCTCTTGGATACCAACTCCTGCTTCTCCAAACTTGTAGCTGAATATTGGTCAAGCTGCAATACAAAGTTACAGACTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

181

Amino Acids

20.2

Weight (kDa)

7.55

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	2 - 99	2.6e-08	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60160 AT3G60160 AT3G60160 AT3G60970
fragaria_vesca	FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440 FvH4_7g08440
malus_domestica	MD07G1084200.v1.1 MD10G1255100.v1.1
prunus_persica	Prupe.1G236000_v2.0.a1 Prupe.2G111400_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.2G111500_v2.0.a1 Prupe.3G051700_v2.0.a1
pyrus_communis	pycom06g09440 pycom07g06810 pycom11g17670 pycom17g18290
rosa_chinensis	RchiOBHm_Chr0c20g0500261 RchiOBHm_Chr0c20g0500281 RchiOBHm_Chr0c20g0500291 RchiOBHm_Chr0c20g0500301 RchiOBHm_Chr1g0340111 RchiOBHm_Chr1g0340151 RchiOBHm_Chr1g0379771 RchiOBHm_Chr1g0379811 RchiOBHm_Chr2g0142731
rosa_laevigata	RLG00000019981 RLG00000028992 RLG00000028994
rosa_multiflora	Rmu_co8369783.1_g000001 Rmu_sc0001169.1_g000006 Rmu_sc0002271.1_g000020 Rmu_sc0002445.1_g000001 Rmu_sc0003314.1_g000032 Rmu_sc0007885.1_g000002 Rmu_sc0009445.1_g000014 Rmu_sc0010800.1_g000006 Rmu_sc0014259.1_g000009 Rmu_sc0017947.1_g000001 Rmu_sc0037710.1_g000001 Rmu_sc0037845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034690 Rroxscaffold_2G00102360 Rroxscaffold_2G00103400 Rroxscaffold_3G00260100 Rroxscaffold_4G00310980 Rroxscaffold_4G00311010 Rroxscaffold_5G00372900
rosa_rugosa	Rorug01G0165500 Rorug01G0165600
rosa_samantha	Rh1BG149000 Rh1BG149500 Rh1CG167500 Rh1CG167800 Rh1DG181300 Rh2AG427400 Rh2AG427500 Rh2BG437200 Rh2DG446900 Rh4BG313900
rosa_wichuraiana	Rw1G015010 Rw1G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	59, 72
AcsI	RAATTY	2 cut(s)	270, 347
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	6 cut(s)	7, 377, 436, 463, 500, 516
AluI	AGCT	6 cut(s)	7, 377, 436, 463, 500, 516
AlwI	GGATC	2 cut(s)	59, 72
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	223, 516
ApoI	RAATTY	2 cut(s)	270, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	402, 434
AspLEI	GCGC	2 cut(s)	218, 228
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	418
BamHI	GGATCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	235, 503
BccI	CCATC	2 cut(s)	308, 422
BciVI	GTATCC	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	3 cut(s)	107, 155, 275
BfmI	CTRYAG	2 cut(s)	122, 372
BfoI	RGCGCY	2 cut(s)	219, 229
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	224, 517
BlsI	GCNGC	2 cut(s)	225, 518
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	57, 307, 529
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpuEI	CTTGAG	2 cut(s)	6, 242
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	3 cut(s)	15, 48, 289
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	235, 503
BshFI	GGCC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	59, 72
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	5 cut(s)	133, 364, 373, 394, 404
Bst6I	CTCTTC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	15, 48, 289
BstH2I	RGCGCY	2 cut(s)	219, 229
BstHHI	GCGC	2 cut(s)	218, 228
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	122, 372
BstV1I	GCAGC	2 cut(s)	235, 503
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	15, 48, 289
BtsIMutI	CAGTG	2 cut(s)	360, 409
CfoI	GCGC	2 cut(s)	218, 228
Cfr13I	GGNCC	1 cut(s)	418
CviAII	CATG	1 cut(s)	415
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	418
FaiI	YATR	7 cut(s)	97, 190, 381, 398, 416, 447, 544
FatI	CATG	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	224, 517
FokI	GGATG	3 cut(s)	2, 35, 296
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	224, 517
FspBI	CTAG	3 cut(s)	107, 155, 275
GlaI	GCGC	2 cut(s)	217, 227
GluI	GCNGC	2 cut(s)	224, 517
HaeII	RGCGCY	2 cut(s)	219, 229
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	2 cut(s)	218, 228
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	2 cut(s)	216, 226
HinP1I	GCGC	2 cut(s)	216, 226
HinfI	GANTC	3 cut(s)	158, 305, 333
HpaII	CCGG	1 cut(s)	219
Hpy188I	TCNGA	3 cut(s)	53, 85, 427
Hpy188III	TCNNGA	5 cut(s)	23, 107, 259, 281, 309
HpyAV	CCTTC	1 cut(s)	465
HpyCH4III	ACNGT	5 cut(s)	133, 364, 373, 394, 404
HpyCH4V	TGCA	5 cut(s)	192, 353, 360, 519, 542
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	2 cut(s)	216, 226
Kzo9I	GATC	1 cut(s)	64
Lsp1109I	GCAGC	2 cut(s)	235, 503
LweI	GCATC	3 cut(s)	57, 307, 529
MaeI	CTAG	3 cut(s)	107, 155, 275
MaeIII	GTNAC	2 cut(s)	404, 528
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	258, 461
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	4 cut(s)	148, 209, 270, 347
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	108, 413
MnlI	CCTC	5 cut(s)	30, 93, 255, 280, 431
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	158, 333
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	225, 518
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	224, 517
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	7 cut(s)	9, 379, 438, 457, 465, 502, 518
SfaNI	GCATC	3 cut(s)	57, 307, 529
SfcI	CTRYAG	2 cut(s)	122, 372
SinI	GGWCC	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	21, 257
SmoI	CTYRAG	2 cut(s)	21, 257
Sse9I	AATT	4 cut(s)	148, 209, 270, 347
SseBI	AGGCCT	1 cut(s)	75
SspI	AATATT	2 cut(s)	177, 506
SspMI	CTAG	3 cut(s)	107, 155, 275
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	5 cut(s)	133, 364, 373, 394, 404
TaqI	TCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	148, 209, 270, 347
TfiI	GAWTC	2 cut(s)	158, 333
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	367, 409
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	223, 516
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	17, 105, 150, 462
TspRI	CASTG	2 cut(s)	367, 409
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	2 cut(s)	270, 347
XbaI	TCTAGA	1 cut(s)	106
XspI	CTAG	3 cut(s)	107, 155, 275
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.