RCHIOBHM_CHR0C20G0500281

ABC transporter C family member

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1467 bp
ATGCTACATAGCATACTCCGAGCACCAATGGCATTTTTCGATTCAACCCCAACTGGAAGAATCTTAAACCGAGCATCTACTGATCAAAGTGTGTTAGATTTGGAAATGGCAATCAAATTAGGTTGGTGCGCTCTCTCTATAATACAGATTTTAGGGACCATTGCAGTGATGTCACAAGTAGCATGGGAAGTATTCATCGTATTCATTCCGGTAACTGCAGTCTGCATATGGTATCAGCAATATTACATACCAACAGCAAGAGAACTGGCGCGGCTATCAGGCATACAAAGGGCTCCGATCCTCCATCACTTTGCAGAATCTCTGGCAGGAGCGGCAACAATCCGTGCTTTTGATCAACAGGAACGCTTTAGTAATGCAAACCTCAGTCTTATTGACAACCACTCAAGGCCATGGTTTCATAATGTGTCAGCAATGGAATGGCTTTCTTTCAGACTAAATCTACTCTCAAACTTTGTGTTTGGCTTCTCATTAGTTCTATTGGTGACTCTACCTGAAGGAGTTATTAATCCAAGCATTGCAGGGTTGGCGGTAACATATGGAATAAATCTGAATGTTTTGCAAGCTTCAATTATATGGAACATATGCAATGCAGAAAATAAGATGATCTCAGTTGAAAGAATTCTGCAGTACTCAAATCTAACAAGTGAAGCACCTCTTGTAATTGAAGAATACAAGCCACCAATCAACTGGCCACAAGTTGGAACAATTTGTTTCAAAAATCTGCAGATTCGTTATGCTGAACATCTCCCATCTGTTCTGAAAAACATTAACTGTACATTTCCGGGAAAAAACAAAGTTGGTGTTGTAGGAAGAACAGGAAGTGGGAAATCAACCCTCATACAGGCTCTTTTCAGGATAGTTGAACCTAGAGAAGGAAGCATTTTAATTGATGATCTAGACATTTGCAAAATTGGCCTTCATGACTTAAGATCAAGACTCAGCATCATTCCACAAGAACCAACAATGTTTGAAGGAACAGTTAGAGGAAACCTCGACCCACTAGAGCAATACTCTGACAGTGATGTTTGGGAGGCTTTAGATAAATGTCAGCTAGGTGATCTAGTGCGTGCAAAGGAAGAGAAATTGGAAGCCTCAGTGACGGAAAATGGAGAAAACTGGAGTGCGGGTCAAAGACAGTTACTTTGCCTTGGAAGAGCATTGCTTAAGAAAAGCAGAATTCTGGTATTGGATGAAGCAACAGCATCAATTGATTCTGCAACTGATGGGGTGATACAGAAGATCATCAGCCAAGAATTCAAAGACCGAACAGTTGTCACAGTAGCTCATAGAATCCACACAGTTATAGACAGTGATCTCGTTTTGGTGCTCAGTGACGGAAGGATTGCAGAATACGACACACCAGCAAAGCTACTAGAGAGAGAAGATTCTTTATTTTCTAAACTCATAAAGGAGTACTCAATGAGATCCCAGAGCTTCAACAGGTGA

Protein Analysis

488

Amino Acids

54.63

Weight (kDa)

5.92

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 719
AccBSI CCGCTC 1 cut(s) 332
AccII CGCG 1 cut(s) 271
AciI CCGC 4 cut(s) 271, 332, 548, 1145
AclWI GGATC 2 cut(s) 292, 1440
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 3 cut(s) 639, 1197, 1274
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 3 cut(s) 650, 796, 1436
AfiI CCNNNNNNNGG 3 cut(s) 719, 862, 893
AflII CTTAAG 2 cut(s) 946, 1184
AgsI TTSAA 9 cut(s) 45, 588, 635, 686, 736, 884, 992, 1279, 1459
AluBI AGCT 5 cut(s) 584, 1072, 1304, 1390, 1455
AluI AGCT 5 cut(s) 584, 1072, 1304, 1390, 1455
Alw21I GWGCWC 2 cut(s) 25, 1350
AlwI GGATC 2 cut(s) 292, 1440
AoxI GGCC 3 cut(s) 407, 710, 934
ApoI RAATTY 3 cut(s) 639, 1197, 1274
ArsI GACNNNNNNTTYG 2 cut(s) 1146, 1178
AseI ATTAAT 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 639
AspLEI GCGC 2 cut(s) 131, 271
AspS9I GGNCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 3 cut(s) 514, 1088, 1261
AvaII GGWCC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 712
BanII GRGCYC 1 cut(s) 295
Bbv12I GWGCWC 2 cut(s) 25, 1350
BccI CCATC 3 cut(s) 312, 778, 1238
BclI TGATCA 2 cut(s) 82, 352
BcnI CCSGG 1 cut(s) 804
BfaI CTAG 6 cut(s) 888, 917, 1022, 1073, 1082, 1394
BfmI CTRYAG 3 cut(s) 216, 644, 743
BfrI CTTAAG 2 cut(s) 946, 1184
BisI GCNGC 2 cut(s) 272, 333
BlsI GCNGC 2 cut(s) 273, 334
BmcAI AGTACT 2 cut(s) 650, 1436
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 157, 294
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 3 cut(s) 83, 972, 1232
BplI GAGNNNNNCTC 4 cut(s) 996, 1028, 1016, 1048
BpmI CTGGAG 1 cut(s) 1159
BpuEI CTTGAG 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 804
BsaJI CCNNGG 2 cut(s) 410, 1168
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bsc4I CCNNNNNNNGG 3 cut(s) 719, 862, 893
Bse1I ACTGG 4 cut(s) 58, 270, 713, 1142
Bse3DI GCAATG 5 cut(s) 159, 438, 534, 613, 1178
BseDI CCNNGG 2 cut(s) 410, 1168
BseGI GGATG 1 cut(s) 1216
BseLI CCNNNNNNNGG 3 cut(s) 719, 862, 893
BseMI GCAATG 5 cut(s) 159, 438, 534, 613, 1178
BseMII CTCAG 5 cut(s) 397, 642, 973, 1128, 1363
BseNI ACTGG 4 cut(s) 58, 270, 713, 1142
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 409, 712, 936
BsiHKAI GWGCWC 2 cut(s) 25, 1350
BsiSI CCGG 2 cut(s) 209, 803
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 3 cut(s) 719, 862, 893
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 3 cut(s) 409, 712, 936
Bsp1286I GDGCHC 3 cut(s) 25, 295, 1350
Bsp1407I TGTACA 1 cut(s) 794
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 4 cut(s) 271, 332, 548, 1145
BspANI GGCC 3 cut(s) 409, 712, 936
BspCNI CTCAG 5 cut(s) 396, 641, 972, 1127, 1362
BspFNI CGCG 1 cut(s) 271
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 2 cut(s) 157, 294
BspMAI CTGCAG 3 cut(s) 220, 648, 747
BspPI GGATC 2 cut(s) 292, 1440
BspQI GCTCTTC 1 cut(s) 1168
BspTI CTTAAG 2 cut(s) 946, 1184
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 5 cut(s) 159, 438, 534, 613, 1178
BsrGI TGTACA 1 cut(s) 794
BsrI ACTGG 4 cut(s) 58, 270, 713, 1142
BssECI CCNNGG 2 cut(s) 410, 1168
BssT1I CCWWGG 2 cut(s) 410, 1168
Bst4CI ACNGT 8 cut(s) 794, 1000, 1040, 1158, 1291, 1300, 1321, 1331
Bst6I CTCTTC 2 cut(s) 1092, 1168
BstAFI CTTAAG 2 cut(s) 946, 1184
BstAUI TGTACA 1 cut(s) 794
BstC8I GCNNGC 2 cut(s) 582, 1089
BstDEI CTNAG 5 cut(s) 383, 628, 959, 1114, 1349
BstDSI CCRYGG 1 cut(s) 410
BstENI CCTNNNNNAGG 2 cut(s) 860, 891
BstF5I GGATG 1 cut(s) 1216
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 2 cut(s) 131, 271
BstMWI GCNNNNNNNGC 4 cut(s) 29, 332, 545, 933
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 3 cut(s) 216, 644, 743
BstUI CGCG 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 1445
BstXI CCANNNNNNTGG 1 cut(s) 708
BstYI RGATCY 1 cut(s) 1445
BsuRI GGCC 3 cut(s) 409, 712, 936
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 1 cut(s) 1216
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 5 cut(s) 171, 1045, 1122, 1336, 1357
Cac8I GCNNGC 2 cut(s) 582, 1089
CciI TCATGA 1 cut(s) 940
CfoI GCGC 2 cut(s) 131, 271
Cfr13I GGNCC 1 cut(s) 156
Csp6I GTAC 3 cut(s) 649, 795, 1435
CviAII CATG 3 cut(s) 183, 411, 941
CviQI GTAC 3 cut(s) 649, 795, 1435
DdeI CTNAG 5 cut(s) 383, 628, 959, 1114, 1349
EaeI YGGCCR 1 cut(s) 710
Eam1104I CTCTTC 2 cut(s) 1092, 1168
EarI CTCTTC 2 cut(s) 1092, 1168
Eco130I CCWWGG 2 cut(s) 410, 1168
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 534
EcoNI CCTNNNNNAGG 2 cut(s) 860, 891
EcoRI GAATTC 3 cut(s) 639, 1197, 1274
EcoT14I CCWWGG 2 cut(s) 410, 1168
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 2 cut(s) 410, 1168
FaeI CATG 3 cut(s) 186, 414, 944
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 1 cut(s) 169
FatI CATG 3 cut(s) 182, 410, 940
FauI CCCGC 1 cut(s) 1138
FauNDI CATATG 3 cut(s) 227, 556, 602
FbaI TGATCA 2 cut(s) 82, 352
Fnu4HI GCNGC 2 cut(s) 272, 333
FokI GGATG 1 cut(s) 1223
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 272, 333
FspBI CTAG 6 cut(s) 888, 917, 1022, 1073, 1082, 1394
GlaI GCGC 2 cut(s) 130, 270
GluI GCNGC 2 cut(s) 272, 333
GsuI CTGGAG 1 cut(s) 1159
HaeIII GGCC 3 cut(s) 409, 712, 936
HapII CCGG 2 cut(s) 209, 803
HhaI GCGC 2 cut(s) 131, 271
Hin1II CATG 3 cut(s) 186, 414, 944
Hin6I GCGC 2 cut(s) 129, 269
HinP1I GCGC 2 cut(s) 129, 269
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 9 cut(s) 41, 60, 317, 505, 748, 957, 1232, 1311, 1406
HpaII CCGG 2 cut(s) 209, 803
HphI GGTGA 3 cut(s) 514, 1088, 1261
Hpy188I TCNGA 6 cut(s) 20, 297, 452, 570, 780, 1036
Hpy188III TCNNGA 4 cut(s) 874, 917, 941, 954
HpyAV CCTTC 5 cut(s) 509, 887, 947, 986, 1353
HpyCH4III ACNGT 8 cut(s) 794, 1000, 1040, 1158, 1291, 1300, 1321, 1331
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 332, 545, 933
HpyF3I CTNAG 5 cut(s) 383, 628, 959, 1114, 1349
Hsp92II CATG 3 cut(s) 186, 414, 944
HspAI GCGC 2 cut(s) 129, 269
Ksp22I TGATCA 2 cut(s) 82, 352
LguI GCTCTTC 1 cut(s) 1168
LmnI GCTCC 2 cut(s) 298, 329
LweI GCATC 3 cut(s) 83, 972, 1232
MaeI CTAG 6 cut(s) 888, 917, 1022, 1073, 1082, 1394
MaeIII GTNAC 8 cut(s) 171, 211, 502, 550, 1117, 1158, 1294, 1352
MbiI CCGCTC 1 cut(s) 332
MboII GAAGA 7 cut(s) 69, 698, 843, 1109, 1185, 1270, 1415
MfeI CAATTG 1 cut(s) 1227
MflI RGATCY 1 cut(s) 1445
MhlI GDGCHC 3 cut(s) 25, 295, 1350
MlsI TGGCCA 1 cut(s) 712
MluNI TGGCCA 1 cut(s) 712
MlyI GAGTC 2 cut(s) 499, 951
MmeI TCCRAC 1 cut(s) 700
MnlI CCTC 8 cut(s) 311, 392, 684, 866, 998, 1022, 1045, 1123
Mox20I TGGCCA 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 639
MscI TGGCCA 1 cut(s) 712
MseI TTAA 6 cut(s) 65, 525, 789, 905, 947, 1185
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 712
MspCI CTTAAG 2 cut(s) 946, 1184
MspI CCGG 2 cut(s) 209, 803
MspR9I CCNGG 1 cut(s) 804
MunI CAATTG 1 cut(s) 1227
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 4 cut(s) 29, 332, 545, 933
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 1 cut(s) 410
NdeI CATATG 3 cut(s) 227, 556, 602
NlaIII CATG 3 cut(s) 186, 414, 944
NlaIV GGNNCC 2 cut(s) 157, 294
NmuCI GTSAC 5 cut(s) 171, 502, 1117, 1294, 1352
PagI TCATGA 1 cut(s) 940
PciSI GCTCTTC 1 cut(s) 1168
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 7 cut(s) 41, 60, 317, 748, 1232, 1311, 1406
PflMI CCANNNNNTGG 1 cut(s) 719
PfoI TCCNGGA 1 cut(s) 802
PkrI GCNGC 2 cut(s) 273, 334
PleI GAGTC 2 cut(s) 499, 951
PpsI GAGTC 2 cut(s) 499, 951
PshBI ATTAAT 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 157, 294
PspPI GGNCC 1 cut(s) 156
PstI CTGCAG 3 cut(s) 220, 648, 747
PsuI RGATCY 1 cut(s) 1445
RsaI GTAC 3 cut(s) 650, 796, 1436
RsaNI GTAC 3 cut(s) 649, 795, 1435
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 1168
SaqAI TTAA 6 cut(s) 65, 525, 789, 905, 947, 1185
SatI GCNGC 2 cut(s) 272, 333
Sau96I GGNCC 1 cut(s) 156
ScaI AGTACT 2 cut(s) 650, 1436
SchI GAGTC 2 cut(s) 499, 951
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 3 cut(s) 25, 295, 1350
SfaNI GCATC 3 cut(s) 83, 972, 1232
SfcI CTRYAG 3 cut(s) 216, 644, 743
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 3 cut(s) 403, 946, 1184
SmoI CTYRAG 3 cut(s) 403, 946, 1184
SsiI CCGC 4 cut(s) 271, 332, 548, 1145
SspI AATATT 1 cut(s) 242
SspMI CTAG 6 cut(s) 888, 917, 1022, 1073, 1082, 1394
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 2 cut(s) 410, 1168
TaaI ACNGT 8 cut(s) 794, 1000, 1040, 1158, 1291, 1300, 1321, 1331
TaqI TCGA 2 cut(s) 39, 1014
TaqII GACCGA 1 cut(s) 1299
TatI WGTACW 3 cut(s) 648, 794, 1434
TauI GCSGC 2 cut(s) 274, 335
TfiI GAWTC 7 cut(s) 41, 60, 317, 748, 1232, 1311, 1406
Tru1I TTAA 6 cut(s) 65, 525, 789, 905, 947, 1185
Tru9I TTAA 6 cut(s) 65, 525, 789, 905, 947, 1185
TscAI CASTG 5 cut(s) 171, 1045, 1122, 1336, 1357
TseFI GTSAC 5 cut(s) 171, 502, 1117, 1294, 1352
Tsp45I GTSAC 5 cut(s) 171, 502, 1117, 1294, 1352
TspDTI ATGAA 5 cut(s) 184, 193, 407, 929, 1227
TspGWI ACGGA 3 cut(s) 332, 1136, 1371
TspRI CASTG 5 cut(s) 171, 1045, 1122, 1336, 1357
Van91I CCANNNNNTGG 1 cut(s) 719
Vha464I CTTAAG 2 cut(s) 946, 1184
VpaK11BI GGWCC 1 cut(s) 156
VspI ATTAAT 1 cut(s) 525
XagI CCTNNNNNAGG 2 cut(s) 860, 891
XapI RAATTY 3 cut(s) 639, 1197, 1274
XbaI TCTAGA 1 cut(s) 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 6 cut(s) 888, 917, 1022, 1073, 1082, 1394
ZrmI AGTACT 2 cut(s) 650, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.