pycom17g18290

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15686191 .. 15687209
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18290.2

Sequence Viewer

Length: 816 bp
ATGGAAAATAGGGAAGTTTACACAAAGAAAGGGAAACAACCTTCCTTGCACGGCAAGGAAGGGAAAGTTGCAAAGAACCTTTGTTTGTTCGTTCTTGATTTAGGAAAGGTCAACCAAAATAGGAAACTTTGGCTTAACTTTCCTACTTCAAGTAGGAATCCTTGTGTGATTAGGAATCCTCGTCCAACTAGGAATCCTCATGTGAGTGAGGAACCTCCTTCAATTTGGAAACCTTCTCATAATTGGAATCCTCGTCGTAGTAGGAATCCTTGCGACATCAACTCTTCAATTTCGTCCATTCCTTTTGCTCCAAGCATAAGCTATCCAATTTGTGCCCAAAAGTGCTCCAAAAGGCTCCAAAATGCATCCTTTTGCCAAATACGTCTTATGAACCTGAAAACACACAAAAGAAGCTCATATCAAGGGGTATTACCTAGCCACTGCAAGGGAACTAAAAAAGCTCCGGTTATGAACTATGCATCGGAGACATCACTTGGAGTGGTTACCATAAGAGCTTCTAAAATGGCTAACAGATTCTTCCATAACTACTTGAAACTAGTTGACACAGGTGCTCGACTGTTATTTCATTCTAATGCAACCATGGAGTGGTTAATTTTAAGGACAGAAGCACTTCAGAATTTGACCCTTTTCGTGGTTGCTTTCTTACTTATCTTACTCCCCAAGGGTTATGTTGCTCCAGGTGTTTATCTTGAACAAATTTTCTCAATATATGCAGGGCTGATAGGAGCATATTCATGCGACTTAAATGGCTTTCCTTTAAGCTATTTTCGTGTGTTTGTAGGTCCAAAGGGCTAA

Protein Analysis

272

Amino Acids

30.6

Weight (kDa)

10.03

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 606
AcsI RAATTY 2 cut(s) 637, 717
AcuI CTGAAG 1 cut(s) 617
AfiI CCNNNNNNNGG 3 cut(s) 445, 606, 652
AgsI TTSAA 5 cut(s) 150, 222, 288, 553, 713
AhlI ACTAGT 1 cut(s) 556
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 5 cut(s) 321, 414, 461, 515, 783
AluI AGCT 5 cut(s) 321, 414, 461, 515, 783
Alw21I GWGCWC 2 cut(s) 347, 574
Alw26I GTCTC 1 cut(s) 479
ApoI RAATTY 2 cut(s) 637, 717
Asp700I GAANNNNTTC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 803
AvaII GGWCC 1 cut(s) 803
BaeGI GKGCMC 1 cut(s) 337
Bbv12I GWGCWC 2 cut(s) 347, 574
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 479
BcuI ACTAGT 1 cut(s) 556
BfaI CTAG 3 cut(s) 189, 435, 557
Bme1390I CCNGG 1 cut(s) 699
Bme18I GGWCC 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 803
BmiI GGNNCC 2 cut(s) 213, 356
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 2 cut(s) 374, 488
BpmI CTGGAG 1 cut(s) 681
BsaJI CCNNGG 2 cut(s) 600, 681
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 606, 652
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 600, 681
BseGI GGATG 1 cut(s) 365
BseLI CCNNNNNNNGG 3 cut(s) 445, 606, 652
BseSI GKGCMC 1 cut(s) 337
BsiHKAI GWGCWC 2 cut(s) 347, 574
BsiSI CCGG 1 cut(s) 464
BslI CCNNNNNNNGG 3 cut(s) 445, 606, 652
BsmAI GTCTC 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 337, 347, 574
Bsp19I CCATGG 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 213, 356
BssECI CCNNGG 2 cut(s) 600, 681
BssT1I CCWWGG 2 cut(s) 600, 681
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 1 cut(s) 579
Bst6I CTCTTC 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 600
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 1 cut(s) 365
BstMAI GTCTC 1 cut(s) 479
BstNI CCWGG 1 cut(s) 699
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 697
BstSLI GKGCMC 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 1 cut(s) 365
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 803
CviAII CATG 3 cut(s) 200, 601, 756
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 600, 681
Eco47I GGWCC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 617
Eco91I GGTNACC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 697
EcoT14I CCWWGG 2 cut(s) 600, 681
EcoT22I ATGCAT 2 cut(s) 367, 481
ErhI CCWWGG 2 cut(s) 600, 681
FaeI CATG 3 cut(s) 203, 604, 759
FatI CATG 3 cut(s) 199, 600, 755
FokI GGATG 1 cut(s) 352
FspBI CTAG 3 cut(s) 189, 435, 557
GsuI CTGGAG 1 cut(s) 681
HapII CCGG 1 cut(s) 464
Hin1II CATG 3 cut(s) 203, 604, 759
HincII GTYRAC 2 cut(s) 112, 562
HindII GTYRAC 2 cut(s) 112, 562
HinfI GANTC 6 cut(s) 157, 175, 193, 247, 265, 534
HpaII CCGG 1 cut(s) 464
Hpy166II GTNNAC 3 cut(s) 19, 112, 562
Hpy188I TCNGA 2 cut(s) 484, 636
Hpy188III TCNNGA 2 cut(s) 95, 710
Hpy8I GTNNAC 3 cut(s) 19, 112, 562
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 4 cut(s) 51, 53, 228, 243
HpyCH4III ACNGT 1 cut(s) 579
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 7 cut(s) 49, 71, 365, 444, 479, 596, 734
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 3 cut(s) 203, 604, 759
LmnI GCTCC 6 cut(s) 313, 350, 360, 466, 700, 746
LpnPI CCDG 6 cut(s) 407, 477, 552, 684, 711, 720
LweI GCATC 2 cut(s) 374, 488
MaeI CTAG 3 cut(s) 189, 435, 557
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 502
MboII GAAGA 2 cut(s) 276, 529
MhlI GDGCHC 3 cut(s) 337, 347, 574
MluCI AATT 7 cut(s) 222, 241, 288, 327, 612, 637, 717
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 5 cut(s) 189, 202, 207, 225, 261
Mph1103I ATGCAT 2 cut(s) 367, 481
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 5 cut(s) 135, 611, 617, 764, 779
MslI CAYNNNNRTG 3 cut(s) 204, 591, 754
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 699
NcoI CCATGG 1 cut(s) 600
NlaIII CATG 3 cut(s) 203, 604, 759
NlaIV GGNNCC 2 cut(s) 213, 356
NsiI ATGCAT 2 cut(s) 367, 481
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 6 cut(s) 157, 175, 193, 247, 265, 534
PflMI CCANNNNNTGG 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 697
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 2 cut(s) 213, 356
PspPI GGNCC 1 cut(s) 803
RseI CAYNNNNRTG 3 cut(s) 204, 591, 754
SaqAI TTAA 5 cut(s) 135, 611, 617, 764, 779
Sau96I GGNCC 1 cut(s) 803
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 3 cut(s) 337, 347, 574
SfaNI GCATC 2 cut(s) 374, 488
SinI GGWCC 1 cut(s) 803
SmiMI CAYNNNNRTG 3 cut(s) 204, 591, 754
SpeI ACTAGT 1 cut(s) 556
Sse9I AATT 7 cut(s) 222, 241, 288, 327, 612, 637, 717
SspMI CTAG 3 cut(s) 189, 435, 557
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 2 cut(s) 600, 681
TaaI ACNGT 1 cut(s) 579
TaiI ACGT 1 cut(s) 385
TaqI TCGA 1 cut(s) 574
TasI AATT 7 cut(s) 222, 241, 288, 327, 612, 637, 717
TfiI GAWTC 6 cut(s) 157, 175, 193, 247, 265, 534
Tru1I TTAA 5 cut(s) 135, 611, 617, 764, 779
Tru9I TTAA 5 cut(s) 135, 611, 617, 764, 779
TscAI CASTG 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 404, 485, 575, 744
TspRI CASTG 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 803
XapI RAATTY 2 cut(s) 637, 717
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 3 cut(s) 189, 435, 557
Zsp2I ATGCAT 2 cut(s) 367, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.