Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000923

Physical Location & Seq

Genomic Coordinates Forward (+)

22955180 .. 22955789

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1139100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTTAGAGCTATTGATGAAGTAATAAATGATGGTGTAGATGTATTGTCGCTCTCTATTAGCCCAAGCGATCCTAATCCTATGTTTGCAGAGGTTGATAAGCACGACGTAAAAGCCATTGGCTCATTCCATGCCGTGGCCAAAGGTATTATTGTTGTTTTTGCCGCAGGCAATGTTGGACCTGATCCTCAGACAGTGGCGAATGTAGCACCCTGGATCATAAGTGCTGCAGCTACCACCATCGACAGATCCTTCCCCATGCCCGTCACACTCGGAAATAACAACACTCTACCGGCAACTCATACAAAATATGGGCAAGCCATGTTTGTAGGAAAAGAGGTTGGTTTTACTGGTTTGGTGTATCCAGAAGGTCAAGAACTCTTCCTTACAGCGTACGGAAAAACCTACCTGAAACAACTATGGCAGATCTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.59

Weight (kDa)

5.16

Isoelectric Point (pI)

20.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	3 - 108	5.1e-09	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59810
fragaria_vesca	FvH4_3g00161 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42041 FvH4_3g42350
malus_domestica	MD03G1039300.v1.1 MD10G1341300.v1.1 MD11G1039600.v1.1 MD14G1139100.v1.1
prunus_persica	Prupe.4G001800_v2.0.a1 Prupe.6G031400_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1
pyrus_communis	pycom03g03030 pycom11g03350 pycom11g03360 pycom11g03370 pycom17g11100
rosa_chinensis	RchiOBHm_Chr5g0000221 RchiOBHm_Chr5g0075241 RchiOBHm_Chr5g0075251
rosa_laevigata	RLG00000030851 RLG00000036541 RLG00000036542
rosa_multiflora	Rmu_co8057730.1_g000001 Rmu_co8132088.1_g000001 Rmu_sc0000770.1_g000063 Rmu_sc0021936.1_g000001 Rmu_sc0031527.1_g000001 Rmu_ssc0000243.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006310 Rroxscaffold_1G00075880 Rroxscaffold_3G00267190
rosa_rugosa	Rorug04G0382600 Rorug05G0437400 Rorug05G0437500 Rorug05G0437600 Rorug05G0437700 Rorug05G0437800
rosa_samantha	Rh5AG001500 Rh5AG494500 Rh5AG494600 Rh5BG002900 Rh5BG516100 Rh5BG516200 Rh5CG001800 Rh5CG539900 Rh5CG540000 Rh5DG001700 Rh5DG528800 Rh5DG528900
rosa_wichuraiana	Rw5G000200 Rw5G045880 Rw5G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	4 cut(s)	65, 179, 224, 243
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	11, 233
AluI	AGCT	2 cut(s)	11, 233
AlwI	GGATC	4 cut(s)	65, 179, 224, 243
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	227, 230
AspS9I	GGNCC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	214, 242
BccI	CCATC	2 cut(s)	26, 248
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	3 cut(s)	165, 228, 231
BlsI	GCNGC	3 cut(s)	166, 229, 232
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	135, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	135, 212
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	214, 242
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	293
BsiWI	CGTACG	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	70, 184, 216, 248, 426
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	4 cut(s)	65, 179, 224, 243
BsrDI	GCAATG	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	135, 212
BssMI	GATC	5 cut(s)	70, 184, 216, 248, 426
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	169, 318
BstDEI	CTNAG	2 cut(s)	5, 189
BstDSI	CCRYGG	1 cut(s)	135
BstKTI	GATC	5 cut(s)	73, 187, 219, 251, 429
BstMBI	GATC	5 cut(s)	70, 184, 216, 248, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	214, 242
BstX2I	RGATCY	2 cut(s)	248, 426
BstYI	RGATCY	2 cut(s)	248, 426
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	169, 318
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	4 cut(s)	131, 259, 322, 432
CviJI	RGCY	7 cut(s)	11, 63, 116, 123, 140, 233, 320
CviKI_1	RGCY	7 cut(s)	11, 63, 116, 123, 140, 233, 320
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	5, 189
DpnI	GATC	5 cut(s)	72, 186, 218, 250, 428
DpnII	GATC	5 cut(s)	70, 184, 216, 248, 426
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	4 cut(s)	134, 262, 325, 435
FaiI	YATR	9 cut(s)	83, 132, 221, 260, 303, 312, 323, 421, 433
FatI	CATG	4 cut(s)	130, 258, 321, 431
Fnu4HI	GCNGC	3 cut(s)	165, 228, 231
Fsp4HI	GCNGC	3 cut(s)	165, 228, 231
GluI	GCNGC	3 cut(s)	165, 228, 231
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	4 cut(s)	134, 262, 325, 435
HpaII	CCGG	1 cut(s)	293
Hpy188I	TCNGA	2 cut(s)	192, 275
Hpy188III	TCNNGA	2 cut(s)	365, 374
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	262, 362
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	89, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	5, 189
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	134, 262, 325, 435
Kzo9I	GATC	5 cut(s)	70, 184, 216, 248, 426
LpnPI	CCDG	8 cut(s)	153, 195, 199, 226, 306, 336, 378, 422
Lsp1109I	GCAGC	2 cut(s)	214, 242
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	5 cut(s)	72, 186, 218, 250, 428
MboI	GATC	5 cut(s)	70, 184, 216, 248, 426
MboII	GAAGA	1 cut(s)	373
MflI	RGATCY	2 cut(s)	248, 426
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	85, 198, 331
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	5 cut(s)	70, 184, 216, 248, 426
NlaIII	CATG	4 cut(s)	134, 262, 325, 435
NmuCI	GTSAC	1 cut(s)	265
Pfl23II	CGTACG	1 cut(s)	393
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	166, 229, 232
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspLI	CGTACG	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	248, 426
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SatI	GCNGC	3 cut(s)	165, 228, 231
Sau3AI	GATC	5 cut(s)	70, 184, 216, 248, 426
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	179
SsiI	CCGC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	243
TauI	GCSGC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	227, 230
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.