Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8057730.1

Orthogroup ID

OG0000923

Physical Location & Seq

Genomic Coordinates Forward (+)

46 .. 501

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8057730.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgggacttgcttcaggattggcaagaggaggtgctccatcatcttggttagctatttacaaagtttgttgggctactggtggctgcagctcagcagacatacttgctgcatttgatgatgcaatttttgatggtgtggacgtgctttcggcatctctaggttctccgcctccacttgcttcttatgttgaggatgttgtgtccattggttcttttcatgctgtggccaaaggaatctcagttgtatgctctgctggaaactctggcccatactctcaaactatcataaattctgctccttggatattcactgttgcagcaagcactatcgacagggcttttcctactgcaatctccctgggaaacaatcaaactgtagtggtaattctacgcttatttcattcagccatggacaatttttggttggtattgacatcaaataaacatgaagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

151

Amino Acids

15.59

Weight (kDa)

5.0

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59810
fragaria_vesca	FvH4_3g00161 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42041 FvH4_3g42350
malus_domestica	MD03G1039300.v1.1 MD10G1341300.v1.1 MD11G1039600.v1.1 MD14G1139100.v1.1
prunus_persica	Prupe.4G001800_v2.0.a1 Prupe.6G031400_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1
pyrus_communis	pycom03g03030 pycom11g03350 pycom11g03360 pycom11g03370 pycom17g11100
rosa_chinensis	RchiOBHm_Chr5g0000221 RchiOBHm_Chr5g0075241 RchiOBHm_Chr5g0075251
rosa_laevigata	RLG00000030851 RLG00000036541 RLG00000036542
rosa_multiflora	Rmu_co8057730.1_g000001 Rmu_co8132088.1_g000001 Rmu_sc0000770.1_g000063 Rmu_sc0021936.1_g000001 Rmu_sc0031527.1_g000001 Rmu_ssc0000243.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006310 Rroxscaffold_1G00075880 Rroxscaffold_3G00267190
rosa_rugosa	Rorug04G0382600 Rorug05G0437400 Rorug05G0437500 Rorug05G0437600 Rorug05G0437700 Rorug05G0437800
rosa_samantha	Rh5AG001500 Rh5AG494500 Rh5AG494600 Rh5BG002900 Rh5BG516100 Rh5BG516200 Rh5CG001800 Rh5CG539900 Rh5CG540000 Rh5DG001700 Rh5DG528800 Rh5DG528900
rosa_wichuraiana	Rw5G000200 Rw5G045880 Rw5G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	289
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	53, 90
AluI	AGCT	2 cut(s)	53, 90
Alw21I	GWGCWC	1 cut(s)	37
AoxI	GGCC	2 cut(s)	225, 265
ApeKI	GCWGC	4 cut(s)	84, 87, 107, 317
ApoI	RAATTY	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	71, 94, 99, 329
BccI	CCATC	2 cut(s)	46, 125
BciT130I	CCWGG	1 cut(s)	359
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	2 cut(s)	85, 375
BisI	GCNGC	4 cut(s)	85, 88, 108, 318
BlpI	GCTNAGC	1 cut(s)	91
BlsI	GCNGC	4 cut(s)	86, 89, 109, 319
Bme1390I	CCNGG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	109, 161
Bpu1102I	GCTNAGC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	299, 357, 358, 408
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	4 cut(s)	299, 357, 358, 408
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	105, 252
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	4 cut(s)	71, 94, 99, 329
BshFI	GGCC	2 cut(s)	227, 267
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	227, 267
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1720I	GCTNAGC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	227, 267
BspCNI	CTCAG	2 cut(s)	104, 251
BspMAI	CTGCAG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	4 cut(s)	299, 357, 358, 408
BssT1I	CCWWGG	2 cut(s)	299, 408
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	313, 376
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	91, 238
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	2 cut(s)	85, 375
BstV1I	GCAGC	4 cut(s)	71, 94, 99, 329
BstXI	CCANNNNNNTGG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	227, 267
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	266
CviAII	CATG	4 cut(s)	218, 409, 446, 453
CviJI	RGCY	8 cut(s)	53, 74, 84, 90, 227, 267, 338, 407
CviKI_1	RGCY	8 cut(s)	53, 74, 84, 90, 227, 267, 338, 407
DdeI	CTNAG	2 cut(s)	91, 238
EaeI	YGGCCR	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	299, 408
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	2 cut(s)	299, 408
ErhI	CCWWGG	2 cut(s)	299, 408
FaeI	CATG	4 cut(s)	221, 412, 449, 456
FaiI	YATR	9 cut(s)	101, 186, 219, 247, 271, 287, 410, 447, 454
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	217, 408, 445, 452
Fnu4HI	GCNGC	4 cut(s)	85, 88, 108, 318
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	4 cut(s)	85, 88, 108, 318
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	4 cut(s)	85, 88, 108, 318
HaeIII	GGCC	2 cut(s)	227, 267
Hin1II	CATG	4 cut(s)	221, 412, 449, 456
HinfI	GANTC	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	313, 376
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	87, 110, 122, 317, 350
HpyF3I	CTNAG	2 cut(s)	91, 238
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	221, 412, 449, 456
LmnI	GCTCC	2 cut(s)	40, 301
LpnPI	CCDG	6 cut(s)	63, 240, 249, 319, 344, 371
Lsp1109I	GCAGC	4 cut(s)	71, 94, 99, 329
LweI	GCATC	2 cut(s)	109, 161
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	4 cut(s)	123, 289, 384, 415
MluNI	TGGCCA	1 cut(s)	227
MnlI	CCTC	4 cut(s)	20, 23, 180, 184
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	408
NlaIII	CATG	4 cut(s)	221, 412, 449, 456
PasI	CCCWGGG	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	86, 89, 109, 319
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	89
SatI	GCNGC	4 cut(s)	85, 88, 108, 318
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	5 cut(s)	34, 55, 92, 144, 163
SfaNI	GCATC	2 cut(s)	109, 161
SfcI	CTRYAG	2 cut(s)	85, 375
Sse9I	AATT	4 cut(s)	123, 289, 384, 415
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	2 cut(s)	299, 408
TaaI	ACNGT	2 cut(s)	313, 376
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	330
TasI	AATT	4 cut(s)	123, 289, 384, 415
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	4 cut(s)	84, 87, 107, 317
TspDTI	ATGAA	2 cut(s)	206, 389
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	289
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.